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Search results for: CONFORMATIONAL SEARCH
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KEYSTONE WG2: Activities and Results Overview on Keyword Search
PublicationIn this chapter we summarize activities and results achieved by the Keyword Search Working Group (WG2) of the KEYSTONE Cost Action IC1302. We present the goals of the WG2, its main activities in course of the action and provide a summary of the selected publications related to the WG2 goals and co-authored by WG2 members. We concludewith a summary of open research directions in the area of keyword search for structured data.
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Spectral Clustering Wikipedia Keyword-Based search Results
PublicationThe paper summarizes our research in the area of unsupervised categorization of Wikipedia articles. As a practical result of our research, we present an application of spectral clustering algorithm used for grouping Wikipedia search results. The main contribution of the paper is a representation method for Wikipedia articles that has been based on combination of words and links and used for categoriation of search results in this...
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Search for identity of Pomeranian house by means of educational activities
PublicationArchitecture is a universal phenomenon and is a culture-creating field closely related to other fields of art. Hence, experiencing and feeling identity are also conditioned by the proper formation of architectural objects, which are carriers specific values which co-decide about the possibility of this experience occurring in connection with a specific place and the fulfilment of a specific need in it. In the era of ubiquitous...
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In Search of Naval Beauty. Historical Study of Ship Architecture
PublicationDesigning ships is no mean achievement. In the old days, constructors focused on making their ships visually appealing, while paying scant regard to the living conditions of the crew. Such an approach reflected the state of the art in ship building at the time as well as the social order prevalent in those days. A breakthrough came no earlier than at the turn of the 19th / 20th centuries. The industrial revolution brought along...
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Improvement of the Treatment of Loop Structures in the UNRES Force Field by Inclusion of Coupling between Backbone- and Side-Chain-Local Conformational States
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Structural elucidation of transmembrane transporter protein bilitranslocase: Conformational analysis of the second transmembrane region TM2 by molecular dynamics and NMR spectroscopy
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Conformation Properties, Chiroptical Spectra, and Molecular Self-Assembly of 2,3-Piperazinodiones and Their Dithiono Analogues
PublicationRodzina chiralnych cyklicznych oksamidów została otrzymana przez kondensację optycznie czynnych 1,2-diamin ze szczawianem dietylu. Tionowanie produktów odczynnikiem Lawessona doprowadziło do chiralnych 2,3-dipiperazynodionów. Geometrie cząsteczkowe badano z użyciem obliczeń kwantowo-mechanicznych DFT i porównano z wynikami analizy krystalograficznej. Sześcioczłonowy pierścień heterocykliczny przyjmuje konformację półkrzesłową,...
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Synthesis and characterisation of starch cuprate
PublicationThe cupration of granular potato starch with ammonium tetrachlorocuprate(II) was performed by a 20 min lasting microwave-assisted process and by 40 min convectional heating. In both cases the degree of esterification (DE) did not exceed 0.0064. A higher dose of cuprate had a positive effect on DE, regardless of whether the microwave irradiation or the convectional heating was applied, and on the thermal stability of the starch...
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Starch-clay nanocomposite films
PublicationStarch is a natural polymer which, due to its renewability, biodegrability, availability and a relatively low cost, has a high potential for applications in biodegradable materials. However, because of its hydrophilic nature, the number of commercially available starch-based products is still limited. Recently, starch-based nanocomposites with the addition of clay minerals as nanofillers have given rise to large-scale improvements...
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Ensemble fits of restrained peptides’ conformational equilibria to NMR data. Dependence on force fields: AMBER/8 ff03 versus ECEPP/3
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<title>"Pi of the sky": robotic search for cosmic flashes</title>
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<title>Apparatus to search for optical flashes of astronomical origin</title>
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The influence of color grouping on users’ visual search behavior and preferences
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Self–Organizing Map representation for clustering Wikipedia search results
PublicationThe article presents an approach to automated organization of textual data. The experiments have been performed on selected sub-set of Wikipedia. The Vector Space Model representation based on terms has been used to build groups of similar articles extracted from Kohonen Self-Organizing Maps with DBSCAN clustering. To warrant efficiency of the data processing, we performed linear dimensionality reduction of raw data using Principal...
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Search for optimum geometry of selected steel sandwich panel joints
PublicationZastosowanie stalowych paneli typu sandwich w konstrukcjach okrętowych wymaga rozwiązania wielu problemów. Jednymi z trudniejszych zagadnień związanych z tymi nowymi strukturami są połączenia pomiędzy panelami oraz między panelami i konstrukcją innego typu. Artykuł przedstawia poszukiwanie optymalnej geometrii połączenia typu panel-panel w układzie wzdłużnym, przy użyciu parametrycznego modelu w programie ANSYS. Poszukiwano konfiguracji...
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A Tabu Search Algorithm for Optimization of Survivable Overlay Computing Systems
PublicationParadygmat obliczeń rozproszonych ostatnio zyskuje coraz większą uwagę, ponieważ zarówno instytucje przemysłowe, jak i uczelnie wymagają coraz większej mocy obliczeniowej do przetwarzania i analizy danych. Z uwagi na dużą podatność systemów obliczeń na awarie różnych typów (podobnie do systemów sieciowych), gwarancje przeżywalności niniejszych systemów są nieodzowne w celu zapewnienia nieprzerwanego działania usług. Z tego powodu,...
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Self-Organizing Map representation for clustering Wikipedia search results
PublicationThe article presents an approach to automated organization of textual data. The experiments have been performed on selected sub-set of Wikipedia. The Vector Space Model representation based on terms has been used to build groups of similar articles extracted from Kohonen Self-Organizing Maps with DBSCAN clustering. To warrant efficiency of the data processing, we performed linear dimensionality reduction of raw data using Principal...
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0-step K-means for clustering Wikipedia search results
PublicationThis article describes an improvement for K-means algorithm and its application in the form of a system that clusters search results retrieved from Wikipedia. The proposed algorithm eliminates K-means isadvantages and allows one to create a cluster hierarchy. The main contributions of this paper include the ollowing: (1) The concept of an improved K-means algorithm and its application for hierarchical clustering....
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Search engine marketing jako istotne narzędzie komunikacji marketingowej
PublicationKomunikacja marketingowa firmy w Internecie musi uwzględniać tzw. marketing w wyszukiwarkach internetowych (SEM). O efektywnej obecności przedsiębiorstwa w Sieci można mówić, gdy łatwo znaleźć serwis internetowy uwzględniając organiczne wyniki wyszukiwania wyszukiwarek, reklamy typu pay-per-click, optymalizację kluczowych fraz, istotność linków przychodzących (zewnętrznych) oraz wartość zamieszczonych treści. Każdy element projektu...
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Relation-based Wikipedia Search System for Factoid Questions Answering
PublicationIn this paper we propose an alternative keyword search mechanism for Wikipedia, designed as a prototype solution towards factoid questions answering. The method considers relations between articles for finding the best matching article. Unlike the standard Wikipedia search engine and also Google engine, which search the articles content independently, requiring the entire query to be satisfied by a single article, the proposed...
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Playback Attack Detection: The Search for the Ultimate Set of Antispoof Features
PublicationAutomatic speaker verification systems are vulnerable to several kinds of spoofing attacks. Some of them can be quite simple – for example, the playback of an eavesdropped recording does not require any specialized equipment nor knowledge, but still may pose a serious threat for a biometric identification module built into an e-banking application. In this paper we follow the recent approach and convert recordings to images, assuming...
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Harmony Search for Self-configuration of Fault–Tolerant and Intelligent Grids
PublicationIn this paper, harmony search algorithms have been proposed to self-configuration of fault-tolerant grids for big data processing. Self-configuration of computer grids lies in the fact that new computer nodes are automatically configured by software agents and then integrated into the grid. A base node works due to several configuration parameters that define some aspects of data communications and energy power consumption. We...
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Deep neural network architecture search using network morphism
PublicationThe paper presents the results of the research on neural architecture search (NAS) algorithm. We utilized the hill climbing algorithm to search for well-performing structures of deep convolutional neural network. Moreover, we used the function preserving transformations which enabled the effective operation of the algorithm in a short period of time. The network obtained with the advantage of NAS was validated on skin lesion classification...
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An Efficient Noisy Binary Search in Graphs via Median Approximation
PublicationConsider a generalization of the classical binary search problem in linearly sorted data to the graph-theoretic setting. The goal is to design an adaptive query algorithm, called a strategy, that identifies an initially unknown target vertex in a graph by asking queries. Each query is conducted as follows: the strategy selects a vertex q and receives a reply v: if q is the target, then =, and if q is not the target, then v is a...
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Molecular dynamics study on the influence of C-terminal sugar substitution on dynamics and conformation of vancomycin derivatives
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Potato Starch Extrusion and Roasting with Apple Distillery Wastewater as a New Method for Resistant Starch Production
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Structural and dynamic properties of water within the solvation layer around various conformations of the glycine-based polypeptide
PublicationSeveral conformations of the solvated glycine-based polypeptides were investigated using molecular dynamics simulations. Some properties of water in the neighbouring space around these molecules were investigated. It was found, that water forms a well-defined layer - the first solvation shell - around the peptide molecule, and thickness of this layer is independent of the peptide structure, and it equals to approximately 0.28 nm....
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Structural and Dynamic Properties of Water within the Solvation Layer around Various Conformations of the Glycine-based Polypeptide
PublicationSeveral conformations of the solvated glycine-based polypeptides were investigated using molecular dynamics simulations. Some properties of water in the neighboring space around these molecules were investigated. It was found that water forms a well-defined layer—the first solvation shell—around the peptide molecule, and thickness of this layer is independent of the peptide structure and is equal to approximately 0.28 nm. Within...
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Physics-Based Potentials for the Coupling between Backbone- and Side-Chain-Local Conformational States in the United Residue (UNRES) Force Field for Protein Simulations
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Conformational latitude – activity relationship of KPPR tetrapeptide analogues toward their ability to inhibit binding of vascular endothelial growth factor 165 to neuropilin‐1
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Electronic states of tetrahydrofuran molecules studied by electron collisions
PublicationElectronic states of tetrahydrofuran molecules were studied in the excitation energy range 5.5-10 eV using the technique of electron energy loss spectroscopy in the gas phase. Excitation from the two conformations, C2 and Cs, of the ground state of the molecule are observed in the measured energy loss spectra. The vertical excitation energies of the 3(no3s) triplet state from the C2 and Cs conformations of the ground state of the...
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Fragrant films on the basis of potato starch
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Fragrant starch-based films with limonene
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Microwave-assisted boration of potato starch
PublicationZiarnistą skrobię ziemniaczaną boranowano za pomocą kwasu borowego i dziesięciowodnego tetraboranu sodu (boraksu) w reakcji wspomaganej mikrofalami. Określono wpływ stosunku substratów oraz czasu trwania i mocy naświetlania na stopień estryfikacji (DE) produktów. Maksymalna wartość DE w próbkach skrobi boranowanej kwasem wyniosła 0,27, a boranowanej boraksem 0,18. Ustalono, że chociaż zmodyfikowana skrobia, o strukturze estrów...
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Deep Eutectic Solvents for Starch Treatment
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Electrosynthesis of potato starch-casein complexes
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Esterification of starch with sodium selenite and selenate
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Starch–metal complexes and metal compounds
PublicationRecently, metal derivatives of starch evoked considerable interest. Such metal derivatives can take a form of starch compounds bearing metal atoms and metal carrying moieties either covalently bound or complexed. Starch metal complexes may have a character of either Werner, inclusion, sorption or capillary complexes. In this publication, preparation, structure, properties and numerous current and potential applications of those...
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Microwave-assisted silication of potato starch
PublicationSilication of potato starch was performed by microwave irradiation and convectional heating of starch with sodium metasilicate. The study has shown that microwaves offered more selective silication thanconvectional heating. Depending on the dose of metasilicate products of either monoesterification or crosslinking esterification were formed. Increase in the amount of the silicating agent favoured crosslinking of starch. In the...
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Conformation analysis and semiclassical dynamics study of charge exchange process induced by collision of C2+ ions with tetrahydrofuran
PublicationWe present the results of recent investigations of charge transfer processes in the collisions of C²⁺ ions with heterocyclic molecules of tetrahydrofuran.
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?? of the Sky? - automated search for fast optical transients over the whole sky
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Heavy stable charged particles search by novel pattern comparator processor
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A Biased-Randomized Iterated Local Search Algorithm for Rich Portfolio Optimization
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In Search of the Innovative Digital Solutions Enhancing Social Pro-Environmental Engagement
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Search safe ship trajectories in collision situation at sea by evolutionary computation
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Investigating Preattentive Features for Modelling Human Behaviour During Visual Search
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Warianty algorytmu Tabu Search w zastosowaniu harmonogramów zajęć szkolnych
PublicationW niniejszej pracy przedstawiono warianty adaptacji przeszukiwania tabu wrazz wynikami eksperymentów obliczeniowych do układania szkolnych harmonogramówzajęć. W modelu teoretycznym uwzględniono ograniczenia krytyczne jak np.konflikty czasowe uczestników zajęć (nauczyciele i uczniowie) oraz brakprzerw w zajęciach (eliminacja okienek) wybranych uczestników, jak równieżniekrytyczne składniki funkcji celu jak np. równomierne...
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Theoretical Search for Alternative Nine-Electron Ligands Suitable for Superhalogen Anions
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Harmony Search to Self-Configuration of Fault-Tolerant Grids for Big Data
PublicationIn this paper, harmony search algorithms have been proposed to self-configuration of fault-tolerant grids for big data processing. Some tasks related to big data processing have been considered. Moreover, two criteria have been applied to evaluate quality of grids. The first criterion is a probability that all tasks meet their deadlines and the second one is grid reliability. Furthermore, some intelligent agents based on harmony...
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Epigenetic regulation and regeneration: the search for differentially methylated genes in the MRL mouse
PublicationThe MRL mouse is an inbred laboratory strain, which was developed in the 60’s of the 20th century and has been extensively used as a model of lupus erythematosus. The regenerative abilities of the strain were discovered in the 90' when the MRL mouse was shown to close 2 mm hole punches made in the ear pinnae four weeks after injury without scarring. The phenomenon has not been observed in other mouse strains, where the holes...