Search results for: GEOINFORMATICS
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IEEE Bioinformatics and Bioengineering
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Workshop on Algorithms in Bioinformatics
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Tomasz Edward Berezowski dr inż.
PeopleHe was born in 1986 in Warsaw. He graduated in 2009 with honors from the Interfaculty Study of Environmental Protection at SGGW in Warsaw, specialty Restoration and Management of Environment. He defended his doctorate with honors at Vrije UIniversiteit Brussels in 2015. In 2015-2017 he worked as an assistant and then assistant professor at the Faculty of Civil and Environmental Engineering at SGGW. In 2017, he was employed as an...
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Marek Kulawiak dr inż.
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Asia-Pacific Bioinformatics Conference
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Marek Moszyński dr hab. inż.
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Tomasz Bieliński mgr inż.
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A NEW MASTER'S DEGREE PROGRAM IN GEODESY
PublicationFaculty of Civil and Environmental Engineering (WILiS) at Gdansk University of Technology (GUT) offers studies in the fields of Geodesy and Cartography. The bachelor program (7 semesters) was started ten years ago in 2009. It provides the student with the basic skills and knowledge in the fields of surveying, geodesy and more generally geomatics and cartography. It is strongly related to expertise knowledge of civil building (geodetic...
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Elements of Bioinformatics
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Joanna Raczek dr inż.
PeopleEmployment 2003 -- 2019: Faculty of Applied Physics and Mathematics, Gdańsk University of Technology. 2019 - present: Faculty of Electronic, Informatics and Telecominications, Gdańsk University of Technology. Education May 2007: Doctor of Philosophy in Mathematics, University of Gdańsk. Doctoral dissertation: "Paired domination and doubly domination in graphs". Supervisor: dr hab. Jerzy Topp. 2000 -- 2004 Bachelor of Science...
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IEEE Computational Systems Bioinformatics Conference
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Operational Enhancement of Numerical Weather Prediction with Data from Real-time Satellite Images
PublicationNumerical weather prediction (NWP) is a rapidly expanding field of science, which is related to meteorology, remote sensing and computer science. Authors present methods of enhancing WRF EMS (Weather Research and Forecast Environmental Modeling System) weather prediction system using data from satellites equipped with AMSU sensor (Advanced Microwave Sounding Unit). The data is acquired with Department of Geoinformatics’ ground...
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Ahmer Bin Hafeez
PeopleI have experience in Microbiology & Computational Biology, particularly bioinformatics, homology modeling, phylogenetics, structural biology, and drug discovery. Currently, my interest lies in translatable omics studies and drug discovery against novel protein targets involved in cancer and infectious diseases and Host-Pathogen PPIs. My aim involves the use of computational methods for the identification of novel targets and to...
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Joanna Polanska Prof. dr hab. inż.
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Emilia Lubecka dr hab. inż.
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Wearable system supporting navigation of the blind
PublicationImproving blind people comfort of life is a problem ofgreat importance. Fortunately, new technolgies provide us withadditional methods to improve everyday life of the blind and visuallyimpaired. The paper presents experimental system made byresearchers from Department of Geoinformatics of Gdansk Universityof Technology, which is capable of finding the route from theindicated source to chosen destination, using dedicated digital...
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International Journal of Computational Bioinformatics and In Silico Modeling
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International Journal of Applied Earth Observation and Geoinformation
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Gene set enrichment for reproducible science: comparison of CERNO and eight other algorithms
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BatchI: Batch effect Identification in high-throughput screening data using a dynamic programming algorithm
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Molywood: streamlining the design and rendering of molecular movies
PublicationMotivation High-quality dynamic visuals are needed at all levels of science communication, from the conference hall to the classroom. As scientific journals embrace new article formats, many key concepts – particularly in structural biology – are also more easily conveyed as videos than still frames. Notwithstanding, the design and rendering of a complex molecular movie remain an arduous task. Here, we introduce Molywood, a robust...
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Performance of protein-structure predictions with the physics-based UNRES force field in CASP11
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UNRES-Dock—protein–protein and peptide–protein docking by coarse-grained replica-exchange MD simulations
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AQUA-DUCT 1.0: structural and functional analysis of macromolecules from an intramolecular voids perspective
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AQUA-DUCT: a ligands tracking tool
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CAVER Analyst 1.0: graphic tool for interactive visualization and analysis of tunnels and channels in protein structures
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UNRES-GPU for Physics-Based Coarse-Grained Simulations of Protein Systems at Biological Time- and Size-Scales
PublicationThe dynamics of the virus like particles (VLPs) corresponding to the GII.4 Houston, GII.2 SMV, and GI.1 Norwalk strains of human noroviruses (HuNoV) that cause gastroenteritis was investigated by means of long-time (about 30 μs in the laboratory timescale) molecular dynamics simulations with the coarse-grained UNRES force field. The main motion of VLP units turned out to be the bending at the junction between the P1 subdomain (that...
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Elements of Bioinformatics 2021/22
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Elements of Bioinformatics 2022/23
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Elements of Bioinformatics 2023/24
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IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology
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International Conference on Practical Applications of Computational Biology & Bioinformatics
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Potential and Use of the Googlenet Ann for the Purposes of Inland Water Ships Classification
PublicationThis article presents an analysis of the possibilities of using the pre-degraded GoogLeNet artificial neural network to classify inland vessels. Inland water authorities monitor the intensity of the vessels via CCTV. Such classification seems to be an improvement in their statutory tasks. The automatic classification of the inland vessels from video recording is a one of the main objectives of the Automatic Ship Recognition and...
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Alhassan Ali Ahmed
PeopleAlhassan Ali Ahmed BSc of pharmacy, MSc in Bioinformatics and Biotechnology, and currently doing his PhD in Bioinformatics and Machine Learning. Alhassan has considerable experience in the pharmaceutical industry as he worked before in different positions such as; Community pharmacist, Medical advisor, Antibiotics production specialist, Quality assurance specialist, Key account manager for Immunotherapeutic medications, and currently,...
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Identification of evolutionary conserved DNA sequence and corresponding S21 ribosomal protein region for diagnostic purposes of all Borrelia spirochetes
PublicationIt is still under investigation, whether all Borrelia sp. causing Lyme borreliosis and other diseases are already identified and properly classified as human pathogens. For this reason, it is of great importance to develop a diagnostic ELISA test that detects all Borrelia sp. The aim of this study was to identify conserved DNA and protein regions present in all currently known Borrelia sp. In experimental studies 31 available Borrelia...
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Determination of rectification corrections for semi gantry crane rail axes in the local 3D coordinate system
PublicationElectronic tacheometers are currently the standard instruments used in geodetic work, including also geodetic engineering measurements. The main advantage connected with this equipment is among others high accuracy of the measurement and thus high accuracy of the final determinations represented for example by the points’ coordinates. One of many applications of the tacheometers is the measurement of crane rail axes. This measurement...
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New Method for Determination of Adjustment Corrections for Crane Rail Axes
PublicationElectronic tacheometers are currently a standard instrument used in geodetic work, including also geodetic engineering measurements. One of the many applications of tacheometers in engineering geodesy are 3D control measurements of crane rail axes. This paper proposes a new method of computing adjustment corrections for crane rail axes based on 3D polar measurements performed with an electronic tacheometer. The intermediary method...
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The geodetic monitoring of the engineering structure – a practical solution of the problem in 3D space
PublicationThe study raises the issues concerning the automatic system designed for the monitoring of movement of controlled points, located on the roof covering of the Forest Opera in Sopot. It presents the calculation algorithm proposed by authors. It takes into account the specific design and location of the test object. High forest stand makes it difficult to use distant reference points. Hence the reference points used to study the stability...
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Use laser to measure girder deflection
PublicationThe paper presents a new, simple way to measure deflection of selected intens using the device dkkz-2010, which user a laser light source.
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Survey for newly built sport facilities
PublicationThe article presents selected surveying and construction problem on two newly built sports facilities in Gdańsk. The papers contains selected results of surveying.
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Displacements of chimney in the light of computer calculations and surveying
PublicationThe article presents the numerical analysis of reinforced concrete chimney displacements, which was carried out geodetic measurements.
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Route vertical alignment design in the process of its regulation
PublicationRegulacja toru kolejowego ma za zadanie dostosowanie niewłaściwego lub też zdeformowanego położenia osi toru do położenia odpowiadającego parametrom technicznym wymaganym dla danej linii kolejowej. Projekt regulacji wykonywany jest na podstawie pomiaru geodezyjnego wysokości toków szynowych metodą punktów stałych, tzn. w oparciu o umieszczone na słupach wskaźniki regulacji osi toru, których wysokość jest znana. Wykonany w ten sposób...
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A concept of using static gps masurements for determination of vertical and horizontal land deformations in the main and old city of Gdańsk
PublicationArtykuł opisuje koncepcję wykorzystania statycznych pomiarów GPS (stacje GPS) przy analizie przemieszczeń gruntu na terenie Głównego i Starego Miasta w Gdańsku.
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Satellite Laser Ranging technique as a tool for the determination of the Schwarzschild, de Sitter and Lense-Thirring effects
PublicationSatellite Laser Ranging (SLR) is a modern technique used in various research areas and applications related to geodesy and geodynamics. It is commonly used for tasks such as establishing the International Terrestrial Reference Frame (ITRF), monitoring Earth Orientation Parameters (EOP), determining the geocenter, measuring fundamental physical constants, calibrating microwave tracking techniques, conducting time transfer experiments,...
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Ranking metrics in gene set enrichment analysis: do they matter?
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Adaptive filtering of microarray gene expression data based on Gaussian mixture decomposition
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BALCONY: an R package for MSA and functional compartments of protein variability analysis
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TreeCmp: Comparison of Trees in Polynomial Time
PublicationMetryki filogenetyczne umożliwiają ocenę jakości wyników analizy filogenetycznej oraz wiarygodności algorytmów przeprowadzających taką analizę. Aplikacja TreeCmp oferuje efektywne, wielomianowe implementacje ośmiu takich metryk (dla drzew nieukorzenionych i zawierających korzeń) zdefiniowanych dla dowolnych filogenez (nie koniecznie binarnych). Program ten jako pierwszy umożliwia wyznaczanie nowych metryk, definiowanych w oparciu...
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Framework for extracting rails and setting-out railway line axis based on UAV photogrammetric measurements
PublicationTechnical diagnostics enables assessing the current technical condition of a railway line and adjacent infrastructure, and forecasting its changes over a specific time horizon. One of its elements is the periodic monitoring of rail position and their geometry. This article presents a new framework for the setting-out of a railway track axis. The process presented in the manuscript is based on the specific filtration and extraction...
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Zarządzanie Projektami Geoinformatycznymi
e-Learning CoursesCelem przedmiotu jest zapoznanie studentów z zagadnieniami realizacji systemów geoinformatycznych, wykonywaniem studium wykonalności projektu geoinformatycznego, tworzeniem oprogramowania geoinformatycznego, systemem norm w geoinformatyce oraz zasadami zarządzania projektami zgodnie z metodologią PRINCE2.