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A Novel Modal Technique for Time and Frequency Domain Analysis of Waveguide Components
PublicationW pracy zaprezentowano, nową i szybką metodę analizy komponentów falowodowych. Metoda opiera się na kombinacji metody różnic skończonych, metody dekompozycji dziedziny obliczeniowej, redukcji rzędu modelu oraz dyskretnych rozwinięć funkcyjnych. Przedstawiona technika pozwala na skrócenie czasu analizy układu nawet o dwa rzędy wielkości w stosunku do poprzednich algorytmów.
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TIME- AND FREQUENCY-DOMAIN QUASI-2D SMALL-SIGNAL MOSFET MODELS
PublicationA novel approach to small-signal MOSFET modeling is presented in this book. As a result, time- and frequency-domain physics-based quasi-2D NQS four-terminal small-signal MOSFET models are proposed. The time-domain model provides the background to a novel DIBL-included quasi‑2D NQS four-terminal frequency-domain small-signal MOSFET model. Parameters and electrical quantities of the frequency-domain model are described by explicit...
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Time domain model of the resonance-based electromagnetic pulses emission system
PublicationIn the literature, the emission properties of the electromagnetic field pulse systems based on high voltage antennas (HVR) have been widely described. In order to increase the emission efficiency by extending duration and increasing amplitude of the impulse it is possible to use a resonance system tuned to the parameters of the signal shaped in the pulse forming circuit. The synthesis of a time-domain simulation model of a complex...
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Three-objective antenna optimization by means of kriging surrogates and domain segmentation
PublicationIn this paper, an optimization framework for multi-objective design of antenna structures is discussed which exploits data-driven surrogates, a multi-objective evolutionary algorithm, response correction techniques for design refinement, as well as generalized domain segmentation. The last mechanism is introduced to constrain the design space region subjected to sampling, which permits reduction of the number of training data samples...
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Applications of the discrete green's function in the finite-difference time-domain method
PublicationIn this paper, applications of the discrete Green's function (DGF) in the three-dimensional (3-D) finite-difference time-domain (FDTD) method are presented. The FDTD method on disjoint domains was developed employing DGF to couple the subdomains as well as to compute the electromagnetic field outside these subdomains. Hence, source and scatterer are simulated in separate subdomains and updating of vacuum cells, being of little...
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Two-step mechanism of J-domain action in driving Hsp70 function
PublicationJ-domain proteins (JDPs), obligatory Hsp70 cochaperones, play critical roles in protein homeostasis. They promote key allosteric transitions that stabilize Hsp70 interaction with substrate polypeptides upon hydrolysis of its bound ATP. Although a recent crystal structure revealed the physical mode of interaction between a J-domain and an Hsp70, the structural and dynamic consequences of J-domain action once bound and how Hsp70s...
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Nonlinear Modeling in Time Domain Numerical Analysis of Stringed Instrument Dynamics
PublicationMusical instruments are very various in terms of sound quality with their timbre shaped by materials and geometry. Materials' impact is commonly treated as dominant one by musicians, while it is unclear whether it is true or not. The research proposed in the study focuses on determining influence of both these factors on sound quality based on their impact on harmonic composition. Numerical approach has been chosen to allowed independent...
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Hybrid Technique for the EM Scattering Analysis with the Use of Ring Domain Decomposition
PublicationA hybrid technique combining finite-element and mode-matching methods for the analysis of scattering problems in open space is presented here. The main idea is based on impedance matrix descriptions of the boundary surrounding the discrete computational domain and combine it with external field described analytically. The discrete analysis, which is the most time- and memory-consuming, is limited here only to the close proximity...
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Low-Cost Behavioral Modeling of Antennas by Dimensionality Reduction and Domain Confinement
PublicationBehavioral modeling has been rising in importance in modern antenna design. It is primarily employed to diminish the computational cost of procedures involving massive full-wave electromagnetic (EM) simulations. Cheaper alternative offer surrogate models, yet, setting up data-driven surrogates is impeded by, among others, the curse of dimensionality. This article introduces a novel approach to reduced-cost surrogate modeling of...
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Global Complex Roots and Poles Finding Algorithm in C × R Domain
PublicationAn algorithm to find the roots and poles of a complex function depending on two arguments (one complex and one real) is proposed. Such problems are common in many fields of science for instance in electromagnetism, acoustics, stability analyses, spectroscopy, optics, and elementary particle physics. The proposed technique belongs to the class of global algorithms, gives a full picture of solutions in a fixed region ⊂ C × R and...
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Laboratory Examination of Frost-heaving Properties of Road Unbound Mixtures Based on Fines Content and Plasticity Index
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On weak solutions of the boundary value problem within linear dilatational strain gradient elasticity for polyhedral Lipschitz domains
PublicationWe provide the proof of an existence and uniqueness theorem for weak solutions of the equilibrium problem in linear dilatational strain gradient elasticity for bodies occupying, in the reference configuration, Lipschitz domains with edges. The considered elastic model belongs to the class of so-called incomplete strain gradient continua whose potential energy density depends quadratically on linear strains and on the gradient of...
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Existence and uniqueness of monotone and bounded solutions for a finite-difference discretization a` la Mickens of the generalized Burgers–Huxley equation.
PublicationDeparting from a generalized Burgers–Huxley partial differential equation, we provide a Mickens-type, nonlinear, finite-difference discretization of this model. The continuous system is a nonlinear regime for which the existence of travelling-wave solutions has been established previously in the literature. We prove that the method proposed also preserves many of the relevant characteristics of these solutions, such as the positivity,...
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Comparative molecular dynamics study of dimeric and monomeric forms of HIV-1 protease in ligand bound and unbound state
PublicationHuman immunodeficiency virus type 1 protease (HIV-1 PR) is a viral-encoded enzyme that forms a homodimer. HIV-1 PR is essential for replication and assembly of the virus and inactivation of HIV-1 PR enzyme causes production of immature, noninfectious viral particles and thus HIV-1 PR is an attractive target in anti-AIDS drug design. In our current work, we performed molecular dynamics (MD) calculations (500 ns) for two different...
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Time Domain Modeling of Propeller Forces due to Ventilation in Static and Dynamic Conditions
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A method of RTS noise identification in noise signals of semiconductor devices in the time domain
PublicationIn the paper a new method of Random Telegraph Signal (RTS) noise identification is presented. The method is based on a standardized histogram of instantaneous noise values and processing by Gram-Charlier series. To find a device generating RTS noise by the presented method one should count the number of significant coefficients of the Gram-Charlier series. This would allow to recognize the type of noise. There is always one (first)...
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DALSA: Domain Adaptation for Supervised Learning From Sparsely Annotated MR Images
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Molecular dynamics study of amyloid formation of two Abl-SH3 domain peptides
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Molecular dynamics study of the influence of calcium ions on the conformation of gelsolin S2 domain
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A new deterministic method of finding safe ship trajectory for any convex domain
PublicationW artykule wprowadzono nową deterministyczną metodę wyznaczania bezpiecznej trajektorii statku dla sytuacji spotkania z wieloma obiektami obcymi i dla dowolnej zadanej domeny. Jej prostota i fakt, że minimalizuje ona liczbę manewrów czynią ją dobrą alternatywą dla obecnie stosowanych metod. Metoda jest przedstawiona tak, aby mogła być bezpośrednio zastosowana w pokładowych systemach antykolizyjnych lub w systemach VTS.
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Eficient multimode mixed time-frequency domain analysis and optimization of waveguide structures.
PublicationW pracy przedstawiona jest pełnofalowa analiza i optymalizacja struktur falowodowych o zadanej topologii. Nieciągłości falowodowe analizowane są z wykorzystaniem metody FDTD-IBC oraz scharakteryzowane uogólnioną macierzą rozproszenia. Efektywność metody zilustrowana jest na przykładzie filtru falowodowego siódmego rzędu.
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Time domain diagnosis of anticorrosion coatings via shape designed measurement signals.
PublicationW pracy przedstawiono operującą w dziedzinie czasu metodę diagnostyki pokryć przeciwkorozyjnych, na poziomie identyfikacji parametrów obwodu zastępczego. Metoda jest oparta na pobudzeniu obiektu sygnałem niekonwencjonalnym o projektowanym kształcie i pomiarze odpowiedzi obiektu (tzw. obserwabla) po upływie zadanego czasu T. Parametry obwodu zastępczego są obliczane bezpośrednio z obserwabli na podstawie równań wynikających z topologii...
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Eficient multimode mixed time-frequency domain analysis and optimization of waveguide structures.
PublicationW pracy przedstawiona jest pełnofalowa analiza i optymalizacja struktur falowodowych o zadanej topologii. Nieciągłości falowodowe analizowane są z wykorzystaniem metody FDTD-IBC oraz scharakteryzowane uogólnioną macierzą rozproszenia. Efektywność metody zilustrowana jest na przykładzie filtru falowodowego siódmego rzędu.
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Hydrophilic domain II of Escherichia coli Dr fimbriae facilitates cell invasion
PublicationStosując techniki mutagenezy ukierunkowanej oraz mikroskopii elektronowej stwierdzono, że hydrofilowa domena II białka podjednostkowego DraE fimbrii jest odpowiedzialna za inwazję komórki. Otrzymane wyniki są zgodne z interpretacją, że fenotypy fimbrii Dr wiązania i inwazji komórki HeLa mogą być oddzielone.
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A new class of eigenfunction expansion methods for fast frequency-domain analysis of waveguides
PublicationZaprezentowano nową technikę szybkiego obliczania charakterystyk dyspersyjnych falowodów z niejednorodnym wypełnieniem. Metoda ta oblicza przybliżone wartości stałej propagacji dla wymaganej częstotliwości, bazując na bardziej dokładnych wyliczeniach rozkładu pola i stałej propagacji dla kilku wybranych punktów częstotliwości.
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Multi-domain and Context-Aware Recommendations Using Contextual Ontological User Profile
PublicationRecommender Systems (RS) became popular tools in many Web services like Netflix, Amazon, or YouTube, because they help a~user to avoid an information overload problem. One of the types of RS are Context-Aware RS (CARS) which exploit contextual information to provide more adequate recommendations. Cross-Domain RS (CDRS) were created as a response to the data sparsity problem which occurs when only few users can provide reviews or...
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Rapid Microwave Design Optimization in Frequency Domain Using Adaptive Response Scaling
PublicationIn this paper, a novel methodology for cost-efficient microwave design optimization in the frequency domain is proposed. Our technique, referred to as adaptive response scaling (ARS), has been developed for constructing a fast replacement model (surrogate) of the high-fidelity electromagnetic-simulated model of the microwave structure under design using its equivalent circuit (low-fidelity model). The basic principle of ARS is...
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Passing from requirements specification to class model using application domain ontology
PublicationThe quality of a classic software engineering process depends on the completeness of project documents and on the inter-phase consistency. In this paper, a method for passing from the requirement specification to the class model is proposed. First, a developer browses the text of the requirements, extracts the word sequences, and places them as terms into the glossary. Next, the internal ontology logic for the glossary needs to...
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Using contextual conditional preferences for recommendation taska: a case study in the movie domain
PublicationRecommendation engines aim to propose users items they are interested in by looking at the user interaction with a system. However, individual interests may be drastically influenced by the context in which decisions are taken. We present an attempt to model user interests via a set of contextual conditional preferences. We show that usage of proposed preferences gives reasonable values of the accuracy and the precision even when...
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Development of Domain-Specific Solutions within the Polish Infrastructure for Advanced Scientific Research
PublicationThe Polish Grid computing infrastructure was established during the PL-Grid project (2009-2012). The main purpose of this Project was to provide the Polish scientists with an IT basic platform, allowing them to conduct interdisciplinary research on a national scale, and giving them transparent access to international grid resources via international grid infrastructures. Currently, the infrastructure is maintained and extended...
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Radar Signal Parameters Estimation Using Phase Accelerogram in the Time-Frequency Domain
PublicationRadar signal parameter estimation, in the context of the reconstruction of the received signal in a passive radar utilizing other radars as a source of illumination, is one of the fundamental steps in the signal processing chain in such a device. The task is also a crucial one in electronic reconnaissance systems, e.g. ELINT (Electronic Intelligence) systems. In order to obtain accurate results it is important to measure, estimate...
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Accelerated multi-objective design optimization of antennas by surrogate modeling and domain segmentation
PublicationMulti-objective optimization yields indispensable information about the best possible design trade-offs of an antenna structure, yet it is challenging if full-wave electromagnetic (EM) analysis is utilized for performance evaluation. The latter is a necessity for majority of contemporary antennas as it is the only way of achieving acceptable modeling accuracy. In this paper, a procedure for accelerated multi-objective design of...
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Discrete Green's function approach to disjoint domain simulations in 3D FDTD method
PublicationA discrete Green’s function (DGF) approach to couple 3D FDTD subdomains is developed. The total-field/scattered-field subdomains are simulated using the explicit FDTD method whilst interaction between them is computed as a convolution of the DGF with equivalent current sources measured over Huygens surfaces. In the developed method, the DGF waveforms are truncated using the Hann’s window. The error varies in the range -65 to -40...
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Finite-difference time-domain analyses of active cloaking for electrically-large objects
PublicationInvisibility cloaking devices constitute a unique and potentially disruptive technology, but only if they can work over broad bandwidths for electrically-large objects. So far, the only known scheme that allows for broadband scattering cancellation from an electrically-large object is based on an active implementation where electric and magnetic sources are deployed over a surface surrounding the object, but whose ‘switching on’...
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Recent advances in high-frequency modeling by means of domain confinement and nested kriging
PublicationDevelopment of modern high-frequency components and circuits is heavily based on full-wave electromagnetic (EM) simulation tools. Some phenomena, although important from the point of view of the system performance, e.g., EM cross-coupling effects, feed radiation in antenna arrays, substrate anisotropy, cannot be adequately accounted for using simpler means such as equivalent network representations. Consequently, the involvement...
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Frequency and time domain characteristics of digital control of electric vehicle in-wheel drives
PublicationIn-wheel electric drives are promising as actuators in active safety systems of electric and hybrid vehicles. This new function requires dedicated control algorithms, making it essential to deliver models that reflect better the wheel-torque control dynamics of electric drives. The timing of digital control events, whose importance is stressed in current research, still lacks an analytical description allowing for modeling its...
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Large eddy simulations of wall-bounded flows using a simplified immersed boundary method and high-order compact schemes
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An investigation of structural responses of inverted pavements by numerical approaches considering nonlinear stress-dependent properties of unbound aggregate layer
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Identification and characterization of single-stranded-DNA-binding proteins from Thermus thermophilus and Thermus aquaticus - new arrangement of binding domains
PublicationOkreślono molekularne właściwości białek SSB-podobnych z Thermus thermophi-lus i T. aquaticus. Zbadano aktywność białek oraz termostabilność. Ponadto, dowiedziono homodimeryczność obu białek i ustalono minimalną sekwencję wiążącą ssDNA.
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Inhibition Ability of Natural Compounds on Receptor-Binding Domain of SARS-CoV2: An In Silico Approach
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Modelling of wave propagation in composite plates using the time domain spectral element method
PublicationW pracy przedstawiono wyniki obliczeń propagacji fali sprężystej w płycie kompozytowej modelowanej z wykorzystaniem czasowego sformułowania metody elementów spektralnych
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Experimental frequency-domain characterization of fundamental guided mode parameters in coupled coplanar waveguide
PublicationW pracy przedstawiono metodę wyznaczania współczynnika propagacji oraz impedancji charakterystycznej rodzajów podstawowych w strukturze sprzężonych linii koplanarnych. Metoda, oparta o wykorzystanie specjalnych struktur pobudzających oraz klasyczne pomiary w dziedzinie częstotliwości przy pomocy wektorowego analizatora sieci wykazała przydatność do wyznaczania zależnych od częstotliwości parametrów struktury.
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The role of the LB structural loop and its interactions with the PDZ domain of the human HtrA3 protease
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A fast high-resolution 3-D Finite Difference Time-Domain scheme with macromodels.
PublicationZaprezentowano szybki trójwymiarowy wysokorozdzielczy algorytm różnic skończonych w dziedzinie czasu. Zwiększona rozdzielczość osiągnięta została poprzez połączenie standardowego schematu FDTD z makromodelami silnie zagęszczonych objętości stworzonych przez zastosowanie redukcji rzędu modelu. Nowy schemat FDTD z makromodelami jest wyprowadzony. Koszt numeryczny nowej metody jest wyestymowany. Doskonałe wyniki zostały zaobserwowane...
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High resolution optical time-domain reflectometry using sub-picosecond laser sources
PublicationPrzedstawiono działanie sensorów światłowodowych wykorzystujących reflektometrię optyczną w dziedzinie czasu. Omówiono ograniczenia możliwości pomiarowych tej klasy sensorów wynikające z zastosowania w nich reflektometrów światłowodowych zaprojektowanych do zastosowań w telekomunikacji. Zaprezentowano sensory wykorzystujące specjalizowane reflektometry o dużej rozdzielczości. Przedstawiono koncepcję sensora wykorzystującego dwa...
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Fiber optic sensor based on optical frequency domain reflectometry.Optical Fibres and their Applications VIII.
PublicationW pracy przedstawiono wyniki modelowania systemu sensorów światłowodowych wykorzystującego reflektometrię optyczną w dziedzinie częstotliwości. Na podstawie tych wyników zrealizowano quasi-rozłożony sensor temperatury. Zaprezentowano i omówiono wyniki pomiarów.
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Tolerance-Aware Optimization of Microwave Circuits by Means of Principal Directions and Domain-Restricted Metamodels
PublicationPractical microwave design is most often carried out in the nominal sense. Yet, in some cases, performance degradation due to uncertainties may lead to the system failing to meet the prescribed specifications. Reliable uncertainty quantification (UQ) is therefore important yet intricate from numerical standpoint, especially when the circuit at hand is to be evaluated using electromagnetic (EM) simulation tools. Tolerance-aware...
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Low-cost multi-objective design of compact microwave structures using domain patching
PublicationA good compromise between size and electrical performance is an important design consideration for compact microwave structures. Comprehensive information about size/performance trade-offs can be obtained through multi-objective optimization. Due to considerable electromagnetic (EM) cross-couplings in highly compressed layouts, the design process has to be conducted at the level of high-fidelity EM analysis which is computationally...
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Novel approach to modeling spectral-domain optical coherence tomography with Monte Carlo method
PublicationNumerical modeling Optical Coherence Tomography (OCT) systems is needed for optical setup optimization, development of new signal processing methods and assessment of impact of different physical phenomena inside the sample on OCT signal. The Monte Carlo method has been often used for modeling Optical Coherence Tomography, as it is a well established tool for simulating light propagation in scattering media. However, in this method...
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Time-Domain Description of Point-Source Acoustic Wavefields as a Useful Approach in Ultrasonic Techniques
PublicationIn traditional acoustics, field problems are usually treated in the frequency domain, broadband fields being reduced to superposition of harmonic spectrum components. However, this approach is inherently acausal and it is known that in case of arbitrary signals, the distribution-based, time-domain description can be more effective. The present paper is an attempt to expand the time-domain linear systems formalism onto space problems...