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Wyniki wyszukiwania dla: coarse-graining
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Sparse autoregressive modeling
PublikacjaIn the paper the comparison of the popular pitch determination (PD) algorithms for thepurpose of elimination of clicks from archive audio signals using sparse autoregressive (SAR)modeling is presented. The SAR signal representation has been widely used in code-excitedlinear prediction (CELP) systems. The appropriate construction of the SAR model is requiredto guarantee model stability. For this reason the signal representation...
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Advances in Life Course Research
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Longitudinal and Life Course Studies
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Cardiovascular and Perceptual Responses to Resistance Training with Practical Blood Flow Restriction Induced by a Non-Elastic Band vs. Pneumatic Cuff: A Crossover Randomized Study
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Endurance training upregulates the nitric oxide/soluble guanylyl cyclase/cyclic guanosine 3′,5′-monophosphate pathway in the striatum, midbrain and cerebellum of male rats
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Zastosowanie algorytmu ewolucyjnego do uczenia neuronowego regulatora napięcia generatora synchronicznego. Evolutionary algorithm for training a neural network of synchronous generator voltage controller
PublikacjaNajpopularniejsza metoda uczenia wielowarstwowych sieci neuronowych -metoda wstecznej propagacji błędu - charakteryzuje się słabą efektywnością. Z tego względu podejmowane są próby stosowania innych metod do uczenia sieci. W pracy przedstawiono wyniki uczenia sieci realizującej regulator neuronowy, za pomocą algorytmu ewolucyjnego. Obliczenia symulacyjne potwierdziły dobrą zbieżność algorytmu ewolucyjnego w tym zastosowaniu.
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Improvements and new functionalities of UNRES server for coarse-grained modeling of protein structure, dynamics, and interactions
PublikacjaIn this paper we report the improvements and extensions of the UNRES server (https://unres-server.chem.ug.edu.pl) for physics-based simulations with the coarse-grained UNRES model of polypeptide chains. The improvements include the replacement of the old code with the recently optimized one and adding the recent scale-consistent variant of the UNRES force field, which performs better in the modeling of proteins with the β and the...
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Towards Temperature Dependent Coarse-grained Potential of Side-chain Interactions for Protein Folding Simulations
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UNRES server for physics-based coarse-grained simulations and prediction of protein structure, dynamics and thermodynamics
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A unified coarse-grained model of biological macromolecules based on mean-field multipole–multipole interactions
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Optical investigations of electrochemical processes using a long-period fiber grating functionalized by indium tin oxide
Publikacjahe growing needs for fast and reliable sensing devices stimulate development of new technological solutions. In this work a new multi-domain sensing method is demonstrated where optical sensing device has been applied to enhance amount of data received during electrochemical analysis. Thin, optically transparent, high-refractive-index, and electrically conductive indium tin oxide (ITO) film was deposited using magnetron sputtering...
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Preliminary Results of Effect of Rotational Grazing of Farmed Red Deer (Cervus elaphus) on the Biochemical Status of Soil
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Grating Resonances on Periodic Arrays of Sub-wavelength Wires and Strips: From Discoveries to Photonic Device Applications
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Numerical Determination of the Load-Bearing Capacity of a Perforated Thin-Walled Beam in a Structural System with a Steel Grating
PublikacjaThis article presents the results of numerical simulations of a structural system consisting of steel perforated thin-walled beams and a steel grating. The simulations were conducted using the finite element method. The analysis took into account physical and geometric nonlinearity as well as the contact between the steel grating and the beams. The main goal of the research was to develop load-bearing curves for the main beam in...
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The application of impedance measurements for the determination of the probability of the course of corrosion processes
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Peroxidative metabolism of fatty acids in the course of tick-borne encephalitis
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Information Technology in Mechatronics as example of multidisciplinary approach to mechatronics course
PublikacjaArtykuł poświęcony jest przedstawianiu koncepcji nauczania na nowym, multidyscyplinarnym kierunku studiów ''Mechatronika''. W szczególności zaprezentowane zostały przykłady rozwiązań dotyczące kursu przedmiotu Informatyka. Przyjęte rozwiązania mają na celu podniesienie jakości kształcenia inżynierów na Wydziale Mechanicznym Politechniki Gdańskiej.
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A concept of the mechatronics course based on an idea of multi-chair incorporation
PublikacjaPraca poświęcona jest jednemu ze sposobów poprawy jakości kształcenie w zakresie inżynierii mechanicznej, na przykładzie Wydziału Mechanicznego Politechniki Gdańskiej. Polega on na uruchomieniu oraz samodzielnym prowadzeniu nowego kierunku studiów Mechatronika. Koncepcja aktywności wielokatedralnej programu studiów jest obiecującym rozwiązaniem prowadzącym do wysokiego poziomu kształcenia
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Gaussian Mixture Decomposition of Time-Course DNA Microarray Data
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Design of poroelastic wearing course with the use of direct shear test
PublikacjaPoroelastic Road Surfaces (PERS) are characterized by porous structure with at least 20% of air void content and stiffness almost 10 times lower than typical asphalt course. Such properties enable noise reduction up to 12 dB in comparison to SMA 11 mixture. However, the main disadvantage of previously used poroelastic mixtures, based on resin type binders, was their low durability, which resulted in raveling and delamination from...
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Optimisation and field assessment of poroelastic wearing course bond quality
PublikacjaCompared to typical asphalt mixtures, poroelastic mixtures are characterised by high porosity and high flexibility, which are desirable for traffic noise reduction. However, the same properties increase the risk of debonding from the lower layer, which is a significant source of premature damage. The study investigates which of the factors – tack coat agent, type and texture of the lower layer – have the greatest impact on interlayer...
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Introducing concurrent engineering to space and satellite technology undergraduate course
PublikacjaIn recent decade concurrent engineering has become a de facto leading methodology of work in space, aeronautics and sometimes even automotive industry. It has been used in designing ESA space missions for 20 years now, with rst Concurrent Design Facility (CDF) built in ESTEC in 1998. Still, it has not become a universal standard in engineering, and universities are specically reluctant to adopt it into their curricula. As a result,...
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The effect of cigarette smoking on the clinical course of inflammatory bowel disease
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Shallow Water Equations as a Mathematical Model of Whitewater Course Hydrodynamics
PublikacjaPredicting the positions of local hydraulic phenomena, as well as accurately esti-mating the depth and velocity of the water flow are necessary to correctly config-ure a whitewater canoeing course. Currently, a laboratory and full 3D CFD model-ing are typically used in the design process to meet these needs. The article points to another possibility which can be useful at the preliminary stage of the design. The authors show that...
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Innovations in Education and Teaching International (Formerly: Educational and Training Technology International)
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An investigation on the role of GMA grafting degree on the efficiency of PET/PP-g-GMA reactive blending: morphology and mechanical properties
PublikacjaGlycidyl methacrylate (GMA) has been grafted on polypropylene (PP) with the aid of styrene (St) comonomer, by changing dicumyl peroxide initiator content, GMA level, and St concentration. The performance of the resulting PP-g-GMA reactive material towards static and dynamic mechanical properties of poly (ethylene terephthalate) (PET) was monitored in terms of grafting reaction variables and compatibilizer content. Fourier transform...
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INFLUENCE OF DREDGER POWER PLANT TYPE AND DREDGER SIZE ON OUTPUT OF POWER PLANT INSTALLED ON TRAILING SUCTION HOPPER DREDGER
PublikacjaThis paper presents results of investigations dealing with influence of parameters characterizing size of suction hopper dredger as well as type of power system on magnitude of total output of combustion engines installed in dredger power plant.
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Combining the MARTINI and Structure-Based Coarse-Grained Approaches for the Molecular Dynamics Studies of Conformational Transitions in Proteins
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Assessment of fatigue life of aluminized, coarse-grained MAR247 alloy supported by full-field ESPI measurements
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Scale-consistent approach to the derivation of coarse-grained force fields for simulating structure, dynamics, and thermodynamics of biopolymers
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UNRES-Dock—protein–protein and peptide–protein docking by coarse-grained replica-exchange MD simulations
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UNRES-GPU for Physics-Based Coarse-Grained Simulations of Protein Systems at Biological Time- and Size-Scales
PublikacjaThe dynamics of the virus like particles (VLPs) corresponding to the GII.4 Houston, GII.2 SMV, and GI.1 Norwalk strains of human noroviruses (HuNoV) that cause gastroenteritis was investigated by means of long-time (about 30 μs in the laboratory timescale) molecular dynamics simulations with the coarse-grained UNRES force field. The main motion of VLP units turned out to be the bending at the junction between the P1 subdomain (that...
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Opto-Electrochemical Sensing Device Based on Long-Period Grating Coated with Boron-Doped Diamond Thin Film
PublikacjaThe fabrication process of thin boron-doped nanocrystalline diamond (B-NCD) microelectrodes on fused silica single mode optical fiber cladding has been investigated. The B-NCD films were deposited on the fibers using Microwave Plasma Assisted Chemical Vapor Deposition (MW PA CVD) at glass substrate temperature of 475 ºC. We have obtained homogenous, continuous and polycrystalline surface morphology with high sp3 content in B-NCD...
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Comparison of pathological staging and grading of urothelial bladder carcinoma in post-transurethral resection and post-radical cystectomy specimens
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SEM examination of surface layer of C45 steel after grinding on defferent depth
Dane BadawczeFerrite examination for the medium carbon structural steel with low content of Mn, Si, Cu, Cr and Ni after its grinding to a depth of 2 µm, 8 µm, 14 µm and 20 µm, at constant wheel circumferential speed of vs = 25 m/s and constant feed rate vft = 1 m/min. It was shown that the grinding of C45 steel causes strong work hardening of ferrite in surface...
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Simulation Technology and Training Conference
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Lead-stress induced changes in the content of free, thylakoid- and chromatin-bound polyamines, photosynthetic parameters and ultrastructure in greening barley leaves
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Atypical course of varicella-zoster infection in a child with acute lymphoblastic leukaemia
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Course of fatigue among patients previously hospitalised due to COVID-19
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Confirmation Bias in the Course of Instructed Reinforcement Learning in Schizophrenia-Spectrum Disorders
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Relative product diversification in the course of economic development: import-export analysis.
PublikacjaThis paper contributes to trade diversification literature by comparing changes in relative (i.e. assessed in comparison with world patterns) heterogeneity of import and export structures in the process of economic development. In particular, by focusing on the diversification of imports, we add a missing piece to already analysed export trends. We use highly disaggregated trade statistics (4963 product lines) for 163 countries...
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Noise measurements on low noise pavements - problems with inhomogeneity of wearing course
PublikacjaDuring the last several years, when performing numerous CPX noise measurements on low noise pavements,significant inhomogeneity of the wearing course was observed in numerous cases. Similar problems were almost not existing regarding to the dense pavements.In general three main reasons of inhomogeneity can be defined. The first one are imperfections in technology of production of a asphalt mix or/and errors made already during...
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The Course and the Effects of Agricultural Biomass Pyrolysis in the Production of High-Calorific Biochar
PublikacjaThe thermal pyrolysis of agriculture biomass has been studied in a fixed-bed reactor, wherethe pyrolysis was conducted at a steady temperature of 800◦C. This work analyses the pyrolysisproducts of six agricultural wastes: pistachio husks, walnut husks, sunflower hulls, buckwheat husks,corncobs and coconut shells. The conducted research compared examples of large waste biomassstreams from different parts of the world as a potential...
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Coarse-grained model of the native cellulose $$\hbox {I}\alpha$$ and the transformation pathways to the $$\hbox {I}\beta$$ allomorph
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Mechanical and thermodynamic properties of Aβ42, Aβ40, and α-synuclein fibrils: a coarse-grained method to complement experimental studies
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Extension of the Force Matching Method to Anisotropic Coarse-Grained Transferable Force Fields: Application to the Unres Model of Proteins
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Extension of the Unres Package for Physics-Based Coarse-Grained Simulations of Proteins and Protein Complexes to Very Large Systems
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Carte Romanze
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Modification and Optimization of the United-Residue (UNRES) Potential Energy Function for Canonical Simulations. I. Temperature Dependence of the Effective Energy Function and Tests of the Optimization Method with Single Training Proteins
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Equivariant Morse equation
PublikacjaThe paper is concerned with the Morse equation for flows in a representation of a compact Lie group. As a consequence of this equation we give a relationship between the equivariant Conley index of an isolated invariant set of the flow given by x˙ = − ∇f(x) and the gradient equivariant degree of ∇f. Some multiplicity results are also presented.