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Search results for: MAGIC-T JUNCTION
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Common functionally important motions of the nucleotide‐binding domain of H sp70
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Prediction of protein structure with the coarse-grained UNRES force field assisted by small X-ray scattering data and knowledge-based information
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Blind prediction of homo‐ and hetero‐protein complexes: The CASP13‐CAPRI experiment
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Modeling SARS‐CoV‐2 proteins in the CASP‐commons experiment
PublicationCritical Assessment of Structure Prediction (CASP) is an organization aimed at advancing the state of the art in computing protein structure from sequence. In the spring of 2020, CASP launched a community project to compute the structures of the most structurally challenging proteins coded for in the SARS-CoV-2 genome. Forty-seven research groups submitted over 3000 three-dimensional models and 700 sets of accuracy estimates on...
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Prediction of protein assemblies, the next frontier: The CASP14‐CAPRI experiment
PublicationWe present the results for CAPRI Round 50, the 4th joint CASP-CAPRI protein assembly prediction challenge. The Round comprised a total of 12 targets, including 6 dimers, 3 trimers, and 3 higher-order oligomers. Four of these were easy targets, for which good structural templates were available either for the full assembly, or for the main interfaces (of the higher-order oligomers). Eight were difficult targets for which only distantly...
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Impact of AlphaFold on structure prediction of protein complexes: The CASP15‐CAPRI experiment
PublicationWe present the results for CAPRI Round 54, the 5th joint CASP-CAPRI protein assembly prediction challenge. The Round offered 37 targets, including 14 homodimers, 3 homo-trimers, 13 heterodimers including 3 antibody–antigen complexes, and 7 large assemblies. On average 70 CASP and CAPRI predictor groups, including more than 20 automatics servers, submitted models for each target. A total of 21 941 models submitted by these groups...
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The complexity of the L(p,q)-labeling problem for bipartite planar graphs of small degree
PublicationW pracy pokazano, że problem L(p,q)-kolorowania przy użyciu ''t'' kolorów jest NP-zupełny nawet w wersji ograniczonej do grafów planarnych dwudzielnych małego stopnia, nawet dla stosunkowo niewielkich wartości ''t''. Jako wniosek z uzyskanych wyników stwierdzono, że problem L(2,1)-kolorowania grafów planarnych przy użyciu 4 kolorów jest NP-zupełny, a także że problem L(p,q)-kolorowania grafów o maksymalnym stopniu 4 jest NP-zupełny...
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Three-Dimensional Fractography for Conventional and Additive Manufactured Steels After Bending-Torsion Fatigue
PublicationIn this study, fracture surface topography parameters were measured to investigate the effects of multiaxial loading. In order to assess the metrological aspects of fracture for notched specimens made of high-strength steels processed by both conventional and additively manufacturing (AM) techniques, an optical surface profilometer was used. Three bending moment to torsion moment ratios (B/T) were studied, i.e. 2, 1 and 2/3. The...
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Praktyka Środowiskowo-Geodezyjna część środowiskowa - 2022/2023
e-Learning CoursesKurs przeznaczony dla studentów po II sem. studiów. W ramach kursu realizowana jest część środowiskowa praktyki która prowadzona jest przez dr inż. A. Wargin. Za część Geodezyjną praktyki odpowiada dr inż T. Widerski.
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Praktyka Środowiskowa - Część geodezyjna - 2021/2022
e-Learning CoursesKurs przeznaczony dla studentów po II sem. studiów. W ramach kursu realizowana jest część środowiskowa praktyki która prowadzona jest przez dr inż. A. Wargin. Za część Geodezyjną praktyki odpowiada dr inż T. Widerski
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Praktyka Środowiskowo-Geodezyjna część środowiskowa - 2023/2024
e-Learning CoursesKurs przeznaczony dla studentów po II sem. studiów. W ramach kursu realizowana jest część środowiskowa praktyki która prowadzona jest przez dr inż. A. Wargin. Za część Geodezyjną praktyki odpowiada dr inż T. Widerski.
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Detection of Toxoplasma gondii in meat - available techniques
PublicationToxoplasma gondii, which belongs to the phylum Apicomplexa, is an absolute intercellular parasite that infects a wide range of hosts, including warm-blooded animals and humans. An infection with this parasite causes toxoplasmosis, which in most cases remains latent. However, this disease is a major threat to immunocompromised people and pregnant women. In extreme cases, it can damage nervous system or case fatal abortion. Infected...
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Geminate-pair dissociation yield in systems with exponential energetic disorder — A Monte Carlo study
PublicationGeminate electron–hole recombination in systems with exponential energetic disorder is studied by Monte Carlo method. The field and temperature dependencies of geminate-pair dissociation probability are calculated. It is established that the dissociation yield of carrier pairs depends mainly on the extent of carrier thermalization, which influences the Einstein relationship. The approximate limiting temperature is given by Te =...
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Epidemiological study of Toxoplasma gondii infection among cattle in Northern Poland
PublicationToxoplasmosis, caused by Toxoplasma gondii, is a significant disease in livestock and humans. Because of medical and veterinary importance it is essential to study the prevalence of T. gondii infection among human and animals in various parts of the word. In this study, 4033 cattle from eight provinces of Northern Poland (belonging to 190 herds) were tested for IgG antibodies against T. gondii by an in-house ELISA technique based...
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Nowe testy diagnostyczne oparte o antygeny rekombinantowe Toxoplasma gondii do wykrywania oraz różnicowania fazy wczesnej i przewlekłej toksoplazmozy
PublicationToksoplazmoza jest jedną z najbardziej powszechnych chorób pasożytniczych człowieka i zwierząt stałocieplnych. Na świecie jedna trzecia ludzkiej populacji jest chronicznie zarażona Toxoplasma gondii. Mimo, iż choroba ta u zdrowych,dorosłych osób zazwyczaj ma charakter bezobjawowy, bardzo poważne objawy mogą wystąpić w przypadku wrodzonego zarażenia oraz u osób z niedoborem odporności. Ponadto, pomimo dokładnego poznania jej etiologii...
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Studies of Nonlinear Sound Dynamics in Fluids Based on the Caloric Equation of State
PublicationThe sound speed and parameters of nonlinearity B/A, C/A in a fluid are expressed in terms of coefficients in the Taylor series expansion of an excess internal energy, in powers of excess pressure and density. That allows to conclude about features of the sound propagation in fluids, the internal energy of which is known as a function of pressure and density. The sound speed and parameters of nonlinearity in the mixture consisting...
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On the interspike-intervals of periodically-driven integrate-and-fire models
PublicationWe analyze properties of the firing map, which iterations give information about consecutive spikes, for periodically driven linear integrate-and-fire models. By considering locally integrable (thus in general not continuous) input functions, we generalize some results of other authors. In particular, we prove theorems concerning continuous dependence of the firing map on the input in suitable function spaces. Using mathematical...
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Multiresolution analysis and adaptive estimation on a sphere using stereographic wavelets
PublicationWe construct an adaptive estimator of a density function on d dimensional unit sphere Sd (d ≥ 2), using a new type of spherical frames. The frames, or as we call them, stereografic wavelets are obtained by transforming a wavelet system, namely Daubechies, using some stereographic operators. We prove that our estimator achieves an optimal rate of convergence on some Besov type class of functions by adapting to unknown smoothness....
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Dominika Wróblewska dr inż. arch.
PeopleDr. Eng. arch. Dominika Wróblewska, university professor, obtained the title of doctor of technical sciences in 2000. In 2002, she started working at the Faculty of Hydro and Environmental Engineering at the Gdańsk University of Technology (currently the Faculty of Civil and Environmental Engineering) as an assistant professor. Since 2019, he has been working as a university professor. The areas of interest are changes, introducing...
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Effectiveness of Random Field Approach in Serviceability Limit State Analysis of Strip Foundation
PublicationThis work conducts a probabilistic inquiry on how the variability of the parameter defining soil deformability affects the settlement of the foundation located on the soil. The analysis addresses the random foundation model to relevantly estimate the probability of allowable deflection exceedance. The constitutive model parameter is based either on a single random variable or a random field. The computations incorporate direct...
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2025 URBAN INTERSHIP
e-Learning CoursesThis course is about professional analyses of urbanized area. Based on an existing part of Gdansk we will learn ways and different aspects of recognizing function, development, composition and inventory. There will be also some usfull aspects of working in AutoCad environment.
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Projekt architektoniczny V_KAMiPN 2022/23 M. Podwojewska, T. Szymański
e-Learning CoursesKurs dotyczy prowadzenia zajęć z przedmiotu Projekt architektoniczny V w KAMiPN.
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PG_00050783_PROJEKT DYPLOMOWY, SEM. 2 MGR 2020_21; KAMiPN_GRUPA T. SZYMAŃSKI
e-Learning CoursesKurs przeznaczony dla studentów sem. 2 studiów II stopnia WAPG realizujących Projekt dyplomowy I pod opieką promotorską dr inż. arch. Tomasza Szymańskiego w roku akademickim 2020/2021.
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Projekt architektoniczny V_KAMiPN 2024/25 M. Podwojewska, T. Szymański
e-Learning CoursesKurs dotyczy prowadzenia zajęć z przedmiotu Projekt architektoniczny V w KAMiPN.
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MK_46/1_KAMiPN - Projekt dyplomowy sem. 7 - Grupa T. Szymański
e-Learning CoursesProjektowanie w ramach projektu dyplomowego sem. 7
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Structure and evolution of the 4-helix bundle domain of Zuotin, a J-domain protein co-chaperone of Hsp70
PublicationThe J-domain protein Zuotin is a multi-domain eukaryotic Hsp70 co-chaperone. Though it is primarily ribosome-associated, positioned at the exit of the 60S subunit tunnel where it promotes folding of nascent polypeptide chains, Zuotin also has off-ribosome functions. Domains of Zuotin needed for 60S association and interaction with Hsp70 are conserved in eukaryotes. However, whether the 4-helix bundle (4HB) domain is conserved remains...
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The hydration of the protein stabilizing agents: trimethylamine-N-oxide, glycine and its N-methylderivatives - the volumetric and compressibility studies
PublicationThe densities at T = (288.15, 293.15, 298.15, 303.15, and 308.15) K and sound velocities at T = 298.15 K have been measured for aqueous solutions of trimethylamine-N-oxide, glycine, N-methylglycine (sarcosine), N,N-dimethylglycine, N,N,N-trimethylglycine (betaine). From these data the apparent molar volumes, VΦ, the apparent molar isentropic compressions, KS,Φ, and the solvation numbers of solutes have been determined. The concentration...
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Mechanics of Materials, MSc, 2022/2023, Summer, [L,T] (PG_00057378)
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Flavones in cocoa defence against Phytophthora megakarya
PublicationCross-pollination of suitable genotypes and earlier selection of elite offspring using adequate plants-associated defence markers in plantlets leaves are decisive for development of T. cacao genotypes tolerant to black pods disease (BPD). T. cacao plantlets from manual cross-pollination of ♀SNK64 × ♂UPA143 were analyzed for their susceptibility to BPD using leaf disc test. Subsequently, leaves (healthy, wounded and wound+infected)...
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La fine di un grande sogno
PublicationIl contributo esamima le cause che portarono alla fine dell'Unione sovietica, i meccanismi per il passaggio all'economia di mercato e il nuovo ruolo dello Stato nell'economia russa T
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Analiza sprawności energetycznej układu stowarzyszonego modułu ogniw PV i kolektora słonecznego
PublicationProdukowane obecnie komercyjnie moduły ogniw fotowoltaicznych produkują energię elektryczną wskutek konwersji energii promieniowania słonecznego ze stosunkowo niską sprawnością, mniejszą niż 20%. Ponad 80% zaabsorbowanej energii oddawane jest do otoczenia. Układy PV/T, stanowiące połączenie kolektora słonecznego (T) z modułem ogniw fotowoltaicznych (PV), są dobrym sposobem na podwyższenie sprawności konwersji energii promieniowania...
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In vitro affinity of Deinococcus radiodurans MutS towards mismatched DNA exceeds that of its orthologues from Escherichia coli and Thermus thermophilus
PublicationThe mismatch binding protein MutS is responsible for the recognition of mispaired and unpaired bases, which is the initial step in DNA repair. Among the MutS proteins most extensively studied in vitro are those derived from Thermus thermophilus, Thermus aquaticus and Escherichia coli. Here, we present the first report on the in vitro examination of DNA mismatch binding activity of MutS protein from Deinococcus radiodurans and confront...
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ANALIZA I OCENA WADLIWOŚCI DZIAŁANIA WĘZŁA TARCIA W ASPEKCIE II ZASADY TERMODYNAMIKI
PublicationW artykule przedstawio no autorską metodę sprawdzania wadliwości działania układ u tribologicznego , którym był węzła tarcia badany w aparacie czterok ulowym T- 02 znajdującym się w Laboratorium Paliw i Smarów. Badania zostały przeprowadzone w aspekcie II zasady termodynamiki na podstawie analizy i oceny wyników badań laboratoryjnych wykonanych na stanowisku badawczym z aparatem T- 02 . Badania...
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Toxoplasma gondii Recombinant antigen AMA1: Diagnostic Utility of Protein Fragments for the Detection of IgG and IgM Antibodies
PublicationToxoplasma gondii is an important zoonotic protozoan that infects a wide variety of vertebrates as intermediate hosts. For this reason, the diagnosis of this disease is very important and requires continuous improvement. One possibility is to use recombinant antigens in serological tests. Apical membrane antigen 1 (AMA1), a protein located in specific secretory organelles (micronemes) of T. gondii, is very interesting in regard...
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All About Economy Film Meeting
EventsNa Wydziale Zarządzania i Ekonomii PG odbędzie się II edycja międzynarodowego "ECONOMY FILM MEETING" – festiwal starannie wyselekcjonowanych filmów ekonomicznych z naukowym komentarzem.
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MutL protein as a constituent of vsp, ner and mmr repair systems
PublicationMutS and MutL proteins are renowned mostly for their functions in well-characterized, post-DNA replication mis- match repair system (MMR). However, there is growing evidence that MMR system is not the only field of action for these pro- teins. Moreover, the participation in MMR does not even have to be their primary function. There are some reports indicat- ing involvement of MutL in BER, NER and VSP (very short patch repair)....
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MUTL PROTEIN AS A COMMON CONSTITUENT OF VSP, BER, NER AND MMR REPAIR SYSTEMS
PublicationMutS and MutL proteins are renowned mostly for their functions in well-characterized, post-DNA replication mismatch repair system (MMR). However, there is growing evidence that MMR system is not the only field of action of these proteins. Moreover, involvement in MMR does not even have to be their primary function. There are some reports indicating involvement of MutL in BER, NER and VSP (very short patch repair). MutL protein...
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Relativistic two-dimensional hydrogen-like atom in a weak magnetic field
PublicationA two-dimensional (2D) hydrogen-like atom with a relativistic Dirac electron, placed in a weak, static, uniform magnetic field perpendicular to the atomic plane, is considered. Closed forms of the first- and second-order Zeeman corrections to energy levels are calculated analytically, within the framework of the Rayleigh–Schrödinger perturbation theory, for an arbitrary electronic bound state. The second-order calculations are...
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Geometry Parametric Model Order Reduction with Randomly Generated Projection Bases
PublicationIn this work, a reduced-order model for geometry parameters and fast frequency sweep is proposed. The Finite Element Method is used to solve time-harmonic Maxwell’s equations. Taking into account the electromagnetic field does not arbitrarily vary as a function of frequency and geometry parameters, a low dimension system manifold is identified. Thus, the original Finite Element problem can be approximated by a model of reduced...
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FPGA Acceleration of Matrix-Assembly Phase of RWG-Based MoM
PublicationIn this letter, the field-programmable-gate-array accelerated implementation of matrix-assembly phase of the method of moments (MoM) is presented. The solution is based on a discretization of the frequency-domain mixed potential integral equation using the Rao-Wilton-Glisson basis functions and their extension to wire-to-surface junctions. To take advantage of the given hardware resources (i.e., Xilinx Alveo U200 accelerator card),...
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Adaptive Identification of Underwater Acoustic Channel with a Mix of Static and Time-Varying Parameters
PublicationWe consider the problem of identification of communication channels with a mix of static and time-varying parameters. Such scenarios are typical, among others, in underwater acoustics. In this paper, we further develop adaptive algorithms built on the local basis function (LBF) principle resulting in excellent performance when identifying time-varying systems. The main drawback of an LBF algorithm is its high complexity. The subsequently...
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Application of regularized Savitzky–Golay filters to identification of time-varying systems
PublicationSavitzky–Golay (SG) filtering is a classical signal smoothing technique based on the local least squares approximation of the analyzed signal by a linear combination of known functions of time (originally — powers of time, which corresponds to polynomial approximation). It is shown that the regularized version of the SG algorithm can be successfully applied to identification of time-varying finite impulse response (FIR) systems....
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Diffusion equations with spatially dependent coefficients and fractal Cauer-type networks
PublicationIn this article, we formulate and solve the representation problem for diffusion equations: giving a discretization of the Laplace transform of a diffusion equation under a space discretization over a space scale determined by an increment h > 0, can we construct a continuous in h family of Cauer ladder networks whose constitutive equations match for all h > 0 the discretization. It is proved that for a finite differences discretization...
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Voltage and Current Unbalance Reduction in Power Networks with Distributed Generation and Electric Vehicles
PublicationThe current development of prosumer microsources and the expected spread of electric vehicles may cause the appearance of significant current and voltage unbalance in low-voltage (LV) networks. This unbalance, which is an unfavorable phenomenon, may occur when using single-phase photovoltaic (PV) microsources and single-phase home chargers for electric vehicles. This paper presents a proposal for the symmetrization of the LV network...
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Praktyka zawodowa architektoniczna - Praktyka Przeddyplomowa sem. 7 - KOMISJA_B
e-Learning CoursesPraktyka zawodowa architektoniczna na sem. 7 na Wydziale Architektury Politechniki Gdańskiej.Zaliczenie kursu przez komisję B. Ratajczyk-Piątkowska E.Życzkowska K. Dopierała S.Sztafrowski M. Szymański T.
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Synthesis of novel dinuclear ruthenium polypyridine dye for dye-sensitized solar cells application
PublicationA new dinuclear ruthenium(II) polypyridine complex has been successfully synthesized. The new compound has been characterized by spectroscopic and electrochemical methods. Its potential application as a sensitizing dye in dye-sensitized solar cells has been checked under AM 1.5 G irradiation conditions (100 mW cm−2) and its performance was compared to that of a commercially available mononuclear analogous dye. The overall light-to-electricity...
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Pronounced cytostatic activity and bystander effect of a novel series of fluorescent tricyclic acyclovir and ganciclovir derivatives in herpes simplex virus thymidine kinase gene-transduced tumor cell lines
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Magnetic properties of the garnet and glass forms ofMn3Al2Si3O12
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Identification and characterization of single-stranded-DNA-binding proteins from Thermus thermophilus and Thermus aquaticus - new arrangement of binding domains
PublicationOkreślono molekularne właściwości białek SSB-podobnych z Thermus thermophi-lus i T. aquaticus. Zbadano aktywność białek oraz termostabilność. Ponadto, dowiedziono homodimeryczność obu białek i ustalono minimalną sekwencję wiążącą ssDNA.
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Wpływ smarowności na działania układu tribologicznego (impact of lubricity on the tribological system action)
Publicationthe paper presents analysis and evaluation, based on tests results, of the impact of lubricity of the used lubricating oils (shell argina t 40) on the action of boundary layer of sulzer 6zl40/48 engines aboard the ''włocławek'' sea-going ship. for comparison purposes, the same oils were tested with the ceramizer four-stroke engine (all types of the vidar four-stroke engines) regeneration agent added. so understood boundary layer...