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Search results for: protein folding
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Heat Source Models in Numerical Simulations of Laser Welding
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Manufacturing of resistant joints by rolling for light tubular structures
PublicationKoncepcja łączenia aluminiowych elementów rurowych z zastosowaniem nagniatania plastycznego jest alternatywą do istniejących metod łączenia przez spawanie i skręcanie. W artykule prezentowane są oryginalne wyniki badań wpływu parametrów nagniatania wewnętrznego i zewnętrznego oraz różnych postaci powierzchni łączonych na wytrzymałość złącza (aluminium-aluminium) pod wpływem rozciągających sił osiowych.Badania przeprowadzono na...
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Evolutionary approach to solving multi-ship encounter situations
PublicationW artykule wprowadzono nowe podejście do rozwiązywania sytuacji spotkań wielu statków poprzez połączenie założeń teorii gier z programowaniem ewolucyjnym. Spotkanie wielu statków jest zamodelowane jako gra rozgrywana przez ''myślących graczy'' - statki o różnych, potencjalnie zmiennych strategiach. Rozwiązanie - zbiór kooperujących (niekolidujących) trajektorii jest znajdowane za pomocą algorytmu ewolucyjnego.
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Numerical simulation of extreme flooding in a built-up area
PublicationPrzedstawiono dwie numeryczne symulacje propagacji gwałtownej fali powodziowej przez schematyczny model obszaru zabudowanego. Do obliczeń wykorzystano równania przepływu wody płytkiej. Wyniki obliczeń porównano z dostępnymi pomiarami wykonanymi w laboratorium hydraulicznym ENEL-CESI w Mediolanie. Uzyskano zadowalającą zgodność symulacji z eksperymentami.
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A polynomial algorithm for finding T-span of generalized cacti.
PublicationW pracy opisano wielomianowy algorytm wyznaczający optymalne T-pokolorowania dla uogólnionych kaktusów.
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Measurement of filling and discharging loads in a full scale hopper.
PublicationArtykuł przedstawia wyniki doświadczalne naporu piasku na ścinanie uzyskane podczas napełniania i opróżniania leja silosu o pojemności 2.5 m3. Pokazane zostały wartości naporu w funkcji czasu oraz kształt powierzchni górnej materiału dla poszczególnych etapów napełniania i opróżniania.
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The surface contact characteristics after sliding and rolling burnishing.
PublicationW pracy przedstawiono zastosowanie nowej metody SCGC i odpowiedniego programu komputerowego JKC do oceny pomierzonej mikrostereometrii powierzchni części maszyn, głównie na potrzeby kontroli jakości. Na przykładzie powierzchni nagniatanych wykazano cechy nowej metody: wizualizację ułatwiającą wyobrażenie pomierzonej sfery chropowatości, położenie w niej najważniejszych parametrów oceny (rozkład geometrycznej powierzchni kontaktu,...
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An approach to fatigue assessment of metals under biharmonic loading.
PublicationRozpatrywane są kryteria nieograniczonej i ograniczonej trwałości zmęczeniowej metalicznych elementów poddanych biharmonicznemu naprężeniu, którego jedna składowa ma niską częstość. Założono, że składowa ta może być traktowana jako wolno zmieniające się w czasie naprężenie średnie. Kryteria zmęczeniowe sformułowano za pomocą równań Goodmana i Soderberga. Dyskutowane są wyniki przykładowych obliczeń.
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Weldability of high strength steels in wet welding conditions
PublicationIn this paper are characterized problems of high strength steel weldability in underwater wet welding conditions. Water as a welding environment intensifies action of unfavourable factors which influence susceptibility to cold cracking of welded steel joints. The susceptibility to cold cracking of S355J2G3 steel and S500M steel in wet conditions was experimentally estimated (by using Tekken test). It was concluded that the steels...
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Analysis of Rolling Resistance of Tires With Run Flat Insert
PublicationRun flat properties are required for tires intended for special applications like military or rescue vehicles. Run-Flat inserts make possible to drive a car or truck, with certain restrictions, also when inflation pressure is very low or non-existing (after tire damage). Rolling resistance of tires rolling the inserts increases considerably in relation to the rolling resistance of properly inflated tires. This paper presents results...
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Complex Root Finding Algorithm Based on Delaunay Triangulation
PublicationA simple and flexible algorithm for finding zeros of a complex function is presented. An arbitrary-shaped search region can be considered and a very wide class of functions can be analyzed, including those containing singular points or even branch cuts. The proposed technique is based on sampling the function at nodes of a regular or a self-adaptive mesh and on the analysis of the function sign changes. As a result, a set of candidate points...
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The influence of road surface unevenness on tyre rolling resistance
PublicationThe geometric characteristics of road surface substantially affect the interaction between tyre and road. Depending on pavement texture wavelength, the texture chiefly affects tyre/road friction, rolling resistance, interior and exterior noise, tyre wear, and ride comfort. The article presents results of investigations on the influence of road surface unevenness on the rolling resistance of passenger car and truck tyres. The tests...
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INFLUENCE OF LOAD AND INFLATION PRESSURE ON THE TYRE ROLLING RESISTANCE
PublicationTyre load and inflation pressure are important factors controlling rolling resistance of road vehicles. The article presents results obtained in the Technical University of Gdańsk during laboratory and road measurements of different car tyres rolling on different pavements. The knowledge of rolling resistance characteristics is important for modelling car dynamics as well as fuel consumption. It is also necessary to establish proper...
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On root finding algorithms for complex functions with branch cuts
PublicationA simple and versatile method is presented, which enhances the complex root finding process by eliminating branch cuts and branch points in the analyzed domain. For any complex function defined by a finite number of Riemann sheets, a pointwise product of all the surfaces can be obtained. Such single-valued function is free of discontinuity caused by branch cuts and branch points. The roots of the new function are the same as the...
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Influence of Road Wetness on Tire-Pavement Rolling Resistance
PublicationRolling resistance of tires is one of the most important factors influencing energy consumption of road vehicles, especially on rural roads. For practical reasons, most of rolling resistance measurements are usually performed for dry road conditions. Based on the fact that roads are wet during a considerable time over the year and as part of the projects MIRIAM, ROLRES and ROSANNE, the TUG (Technical University of Gdańsk) in Poland...
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Test loading of the longest span arch bridge in Poland
PublicationBridge structures undergo thorough examination during test loading before they come into use. The aim of the examination is to check the correctness of the working structure and construction design assumptions. Test loading on the bridge is preceded by examination specification. This paper describes computational model and test loading results carried out during examibation of the bridge over the Vistula within the bypass of Puławy...
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Effects of workpiece feeding errors on multi-rip saws
PublicationW pracy przedstawiono przyczyny i efekty błędów prowadzenia materiału na wielopiłach tarczowych. Ich znajomość umożliwia szybką diagnostykę przyczyn, a także skuteczną minimalizację błędów prowadzenia materiału.
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Strength analysis of container ship subjected to torsional loading
PublicationThe objective of this work is to investigate the torsional response of a container ship, with particular consideration of the warping effect. Two different models are investigated. In the first case, the full length model of a ship is analyzed and a distributed load is applied with the use of a novel approach. The model is supported in the torsional centre of the cross-section, which is derived analytically. In the second case,...
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Bead-on-Plate Underwater Wet Welding on S700MC Steel
PublicationThe participation of high strength steels in marine and offshore structures is increasing, which makes it necessary to develop recommendations for underwater repair welding works. The article presents the results of bead-on-plate welded specimens made of S700MC high strength steel in underwater wet welding conditions by covered elec- trodes. Three specimens with heat input values in the range 0.91-1.05 kJ/mm were made. The specimens...
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TEMPERATURE INFLUENCE ON TIRE ROLLING RESISTANCE MEASUREMENTS QUALITY
PublicationGlobal warming makes it necessary to reduce energy consumption, which in the case of motor vehicles, is connected, among other things, with reduction of resistive forces acting on a vehicle during its motion. One of the most important components of those forces is rolling resistance, which is very difficult to measure, especially in road conditions. The article deals with issues related to the influence of the thermal state of...
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Impact of thermal loading into the structural performance of ships: A review
PublicationThe presented study reviews the recent advances done regarding the impact of thermal loading on the structural performance of ships. Firstly, the studies related to the mechanical and thermal properties of typical materials used in shipbuilding are outlined. Secondly, a brief introduction to the heat transfer analysis, Finite Element modelling and thermal stresses is provided. Finally, the review of papers dealing with the structural...
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A novel degree-hour method for rational design loading
PublicationCooling degree-hours (CDH) received the broadest application in evaluation of the ambient air cooling efficiency in power engineering (engine intake air cooling systems) and air conditioning. The current CDH numbers are defined as a drop in air temperature multiplied by associated time duration of performance and their summarized annual number is used to estimate the annual effect achieved due to sucked air cooling in power plants...
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Crowdsourcing and Volunteer Computing as Distributed Approach for Problem Solving
PublicationIn this paper, a combination between volunteer computing and crowdsourcing is presented. Two paradigms of the web computing are described, analyzed and compared in detail: grid computing and volunteer computing. Characteristics of BOINC and its contribution to global Internet processing are shown with the stress put onto applications the system can facilitate and problems it can solve. An alternative instance of a grid computing...
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APPLICABILITY OF INLET AIR FOGGING TO MARINE GAS TURBINE
PublicationThe dependency of marine gas turbine on the ambient temperature leads to a decrease of the gas turbine power output in arid areas. Very often gas turbine power output demand is high and the power margins originally designed into the driver , has been exhausted. In such circumstances the inlet air fogging is an effective compensation of gas turbine power. In this paper an analysis of inlet air fogging applicability to marine gas...
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Decreasing CO2 Emissions By Reducing Tire Rolling Resistance
PublicationThe first motor vehicle was built by Nicolas Cugnot almost 250 years ago and since then there has been a continuous process of motor vehicles’ improvements, as well as development of new road pavements. The fuel crisis of the 70s of the 20th century made it clear to vehicle builders that measures should be taken to reduce vehicle fuel consumption and it contributed to an increased interest in electric vehicles. Although significant...
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Random field model of foundations at the example of continuous footing
PublicationThe purpose of the paper is to indicate an efficient method of foundation settlement analysis taking into account the variability of soil properties. The impact of the random variable distribution (Gauss or Lognormal) describing soil stiffness on foundation deposits was assessed. The Monte Carlo simulation method was applied in the computations. The settlements of the strip foundation with the subsoil described by a single random...
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Tyre rolling resistance and its influence on fuel consumption
PublicationRolling resistance of tyres is one of the major resistive forces acting on any wheeled vehicle. Unfortunately, it is also one of the forces very difficult to measure. It is estimated that in certain traffic conditions (like for example constant speed driving with slow or moderate speed) so called Rolling Resistance Impact Factor may be as high as 0.3. This means that reduction of rolling resistance by 50% would lead to 15% of energy...
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Dissection of σE‐dependent cell lysis in Escherichia coli: roles of RpoE regulators RseA, RseB and periplasmic folding catalyst PpiD
PublicationTo understand the mechanism of sigma(E)-dependent cell lysis, we examined the consequences of deletion derivatives of rpoE regulators rseA, rseB and rseC on sigma(E) transcription, on levels of free versus membrane-bound sigma(E) and on OMP-biogenesis limiting factor(s) that could impact cell lysis. RT-PCR showed that individual nonpolar DeltarseA and DeltarseB increased the rpoE expression to varying extents, with pronounced induction...
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Non-coding RNA Research
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Non-Coding RNA Investigation
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The construction of bifunctional fusion proteins consisting of MutS and GFP
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Denaturation of proteins by surfactants studied by the Taylor dispersion analysis
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The construction of bifunctional fusion proteins consisting of MutS and GFP
PublicationSkonstruowano białka chimeryczne zawierające białko MutS z Thermus thermophilus i białko zielonej fluoresceiny GFP z Aequorea victoria, posiadające dla łatwiejszego oczyszczania domeny oligo-histydynowe na N- lub C-końcu. Fuzyjne białka rozpoznawały niekomplementarności w DNA podobnie do MutS T. thermophilus. Fluorescencyjne białka rozpoznające niekomplementarne DNA mogą być użyteczne w wykrywaniu jednonukleotydowych polimorfizmów...
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Recent Developments in Data-Assisted Modeling of Flexible Proteins
PublicationMany proteins can fold into well-defined conformations. However, intrinsically-disordered proteins (IDPs) do not possess a defined structure. Moreover, folded multi-domain proteins often digress into alternative conformations. Collectively, the conformational dynamics enables these proteins to fulfill specific functions. Thus, most experimental observables are averaged over the conformations that constitute an ensemble. In this...
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Dynamics of Chains as a Tool to Study Thermomechanical Properties of Proteins.
PublicationPolymer dynamics can be formulated on different levels of detail. One approach eliminates microscopic degrees of freedom and a polymer molecule is represented by a simplified structure—a chain. In the simplest case monomers of ideal chain have fixed length, and their orientation is independent of the orientations and positions of neighbouring monomers. This is reason that two monomers can co-exist at the same place. Ideal chain...
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Mechanism of Osmolyte Stabilization–Destabilization of Proteins: Experimental Evidence
PublicationIn this work, we investigated the influence of stabilizing (N,N,N-trimethylglycine) and destabilizing (urea) osmolytes on the hydration spheres of biomacromolecules in folded forms (trpzip-1 peptide and hen egg white lysozyme─hewl) and unfolded protein models (glycine─GLY and N-methylglycine─NMG) by means of infrared spectroscopy. GLY and NMG were clearly limited as minimal models for unfolded proteins and should be treated with...
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Molecular Recognition in Complexes of TRF Proteins with Telomeric DNA
PublicationTelomeres are specialized nucleoprotein assemblies that protect the ends of linear chromosomes. In humans and many other species, telomeres consist of tandem TTAGGG repeats bound by a protein complex known as shelterin that remodels telomeric DNA into a protective loop structure and regulates telomere homeostasis. Shelterin recognizes telomeric repeats through its two major components known as Telomere Repeat-Binding Factors, TRF1...
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Transient detection algorithms for speech coding applications
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Fading modelling in dynamic off-body channels
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Tensor-product versus geometric-product coding
PublicationKodowanie przy pomocy iloczynów tensorowych, a kodowanie przy pomocy iloczynów geometrycznych. Formalizm jest zilustrowany przy pomocy paru przykładów.
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Fading Modelling in Dynamic Off-Body Channels
PublicationThis paper presents an off-body fading channel model for Body Area Networks (BANs) in indoor environments. The proposed model, which is based on both simulations and measurements in a realistic environment, consists of three components: mean path loss, body shadowing, and multipath fading. Seven scenarios in an indoor environment (a medium-size room with furniture, mostly consisting of wooden tables and chairs) have been measured:...
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Fading Modelling in Dynamic Off-Body Channels
PublicationThis paper presents an off-body fading channel model for Body Area Networks. The proposed model, based on both simulations and measurements at 2.45 GHz in a realistic indoor environment, consists of three components: mean path loss, body shadowing, and multipath fading. The first is modelled as a log function of distance, the path loss exponent being in between 0.4 and 1.6. A statistical perspective is taken for the other two components,...
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Fading Modeling in Maritime Container Terminal Environments
PublicationIn this paper, an analytical model for slow and fast fading effects in maritime container terminals is derived, from fitting distributions to the results of measurements performed in an actual operational environment. The proposed model is composed of a set of equations, enabling to evaluate fading statistical distribution parameters for different system and environments conditions, as a function of frequency, base station antenna...
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Proton affinity and proton transfer energy for selected organic molecules
PublicationThe Hartree-Fock method in 6-311G** molecular orbitals basis set has been applied to calculations of proton affinities and proton transfer reaction energies for water, methanol, acetaldehyde, ethanol, acetone, acetic acid, methyl acetate and ethyl acetate.
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Effect of ultrasound treatment on water holding properties and microstructure of beef (m. semimembranosus) during ageing
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Characterization of Structural and Energetic Differences between Conformations of the SARS-CoV-2 Spike Protein
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Comparison of protein precipitation methods for various rat brain structures prior to proteomic analysis
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Similarities and Differences in the Protein Composition of Cutaneous Melanoma Cells and Their Exosomes Identified by Mass Spectrometry
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Adipocyte Fatty Acid‐Binding Protein as a Novel Marker of Psoriasis and Clinical Response to Acitretin
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Novel Drying Methods for Sustainable Upcycling of Brewers’ Spent Grains as a Plant Protein Source
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