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Search results for: gra
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Effects of Sterilization Methods on Different 3D Printable Materials for Templates of Physician-Modified Aortic Stent Grafts Used in Vascular Surgery—A Preliminary Study
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Comparison between methods for determining the effective vertical yield stress of intermediate fine-grained soils
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Towards Temperature Dependent Coarse-grained Potential of Side-chain Interactions for Protein Folding Simulations
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UNRES server for physics-based coarse-grained simulations and prediction of protein structure, dynamics and thermodynamics
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A unified coarse-grained model of biological macromolecules based on mean-field multipole–multipole interactions
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Comparison between methods for determining the effective vertical yield stress of intermediate fine-grained soils
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Improvements and new functionalities of UNRES server for coarse-grained modeling of protein structure, dynamics, and interactions
PublicationIn this paper we report the improvements and extensions of the UNRES server (https://unres-server.chem.ug.edu.pl) for physics-based simulations with the coarse-grained UNRES model of polypeptide chains. The improvements include the replacement of the old code with the recently optimized one and adding the recent scale-consistent variant of the UNRES force field, which performs better in the modeling of proteins with the β and the...
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A graph coloring approach to scheduling of multiprocessor tasks on dedicated machines with availability constraints
PublicationWe address a generalization of the classical 1- and 2-processor unit execution time scheduling problem on dedicated machines. In our chromatic model of scheduling machines have non-simultaneous availability times and tasks have arbitrary release times and due dates. Also, the versatility of our approach makes it possible to generalize all known classical criteria of optimality. Under these stipulations we show that the problem...
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Regulated Control of the Assembly and Diversity of LPS by Noncoding sRNAs
PublicationThe outer membrane (OM) of Gram-negative bacteria is asymmetric due to the presence of lipopolysaccharide (LPS) facing the outer leaflet of the OM and phospholipids facing the periplasmic side. LPS is essential for bacterial viability, since it provides a permeability barrier and is a major virulence determinant in pathogenic bacteria. In Escherichia coli, several steps of LPS biosynthesis and assembly are regulated by the RpoE...
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Regulated Assembly of LPS, Its Structural Alterations and Cellular Response to LPS Defects
PublicationDistinguishing feature of the outer membrane (OM) of Gram-negative bacteria is its asymmetry due to the presence of lipopolysaccharide (LPS) in the outer leaflet of the OM and phospholipids in the inner leaflet. Recent studies have revealed the existence of regulatory controls that ensure a balanced biosynthesis of LPS and phospholipids, both of which are essential for bacterial viability. LPS provides the essential permeability...
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Small regulatory bacterial RNAs regulating the envelope stress response
PublicationMost bacteria encode a large repertoire of RNA-based regulatory mechanisms. Recent discoveries have revealed that the expression of many genes is controlled by a plethora of base-pairing noncoding small regulatory RNAs (sRNAs), regulatory RNA-binding proteins and RNA-degrading enzymes. Some of these RNA-based regulated processes respond to stress conditions and are involved in the maintenance of cellular homeostasis. They achieve...
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Modelowanie problemów strażniczych jako grafów dynamicznych - przykładowy sposób analizy skuteczności systemów strażniczych
PublicationW problemach strażniczych rozważamy przestrzeń (graf), w której znajduje się intruz i pewna liczba agentów przechwytujących, zaś celem większości algorytmów jest jak najszybsze przechwycenie intruza lub też uniknięcie przez niego detekcji.Zaprezentowany model pozwala na praktyczne rozważanie problemów z życia wziętych przez matematyczne przedstawienie różnorodnych agentów przechwytujących (kamery mobilne i stacjonarne, strażnicy...
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Polyurethanes as a Potential Medical-Grade Filament for Use in Fused Deposition Modeling 3D Printers – a Brief Review
PublicationThe possibility of using 3D printing technology (3DP) in medical field is a kind of revolution in health care. This has contributed to a rapid growth in demand for 3D printers, whose systems and materials are adapted to strict medical requirements. In this paper, we report a brief review of polyurethanes as a potential medical-grade filament for use in Fused Deposition Modeling (FDM) 3D printer technology. The advantages of polyurethanes...
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High-throughput Evaluation of Lipophilicity and Acidity by New Gradient HPLC Methods
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Path components of the space of gradient vector fields on the two-dimensional disc
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FPGA Implementation of the Gradient Adaptive Lattice Filter Structure for Feature Extraction
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Field investigation on seawater temperature variability in relation to horizontal optical gradient
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Combined pH/organic solvent gradient HPLC in analysis of forensic material
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Influence of pH on Retention in Linear Organic Modifier Gradient RP HPLC
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Vertical distribution of benthic fauna in sediment along the water depth gradient.
PublicationRaport z badań prowadzonych w okresie od 20 VII do 8 VIII 2003 roku na statku badawczym R/V Polarstern w rejonie Spicbergenu.
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Estimation of Synchronous Generator and AVR Parameters Based on Gradient and Genetic Methods
PublicationThe author present a method for the estimation of selected synchronous generator model and AVR parameters using a gradient and a genetic algorithm. The paper shows an example of model parameter estimation for a turbogenerator, based on the generator voltage time responses obtained during an active and reactive power rejection test
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Path components of the space of gradient vector fields on the two dimensional disc
PublicationWe present a short proof that if two gradient maps on the twodimensional disc have the same degree, then they are gradient homotopic.
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Gradient zespolonej fazy krótkoczasowej transformaty Fouriera w analizie spektrograficznej
PublicationGłównym celem rozprawy jest pokazanie nowych możliwości analizy eksploratywnej sygnałów niestacjonarnych, zwłaszcza wielokomponen- towych, w złączonej dziedzinie czas-częstotliwość. Zazwyczaj stosowa- ny do tego celu rozkład energii szacowany na podstawie spektrogramu klasycznego jest tylko jedną z wielu użytecznych, infograficznych repre- zentacji analizowanego sygnału, które są możliwe do przedstawienia w postaci mapy kolorów...
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Surface effects of network materials based on strain gradient homogenized media
PublicationThe asymptotic homogenization of periodic network materials modeled as beam networks is pursued in this contribution, accounting for surface effects arising from the presence of a thin coating on the surface of the structural beam elements of the network. Cauchy and second gradient effective continua are considered and enhanced by the consideration of surface effects. The asymptotic homogenization technique is here extended to...
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The homotopy type of the space of gradient vector fields on the two-dimensional disc
PublicationWe prove that the inclusion of the space of gradient vector fields into the space of all vector fields on D^2 non-vanishing in S^1 is a homotopy equivalence
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Continuum models for pantographic blocks with second gradient energies which are incomplete
PublicationWe postulate a deformation energy for describing the mechanical behavior of so called pantographic blocks, that is bodies constituted by stacking of layers of pantographic sheets. We remark that the pantographic effect is limited in the plane of pantographic sheets and therefore only the second derivatives of transverse displacements along the pantographic fibers appear in the chosen deformation energy. We use this novel energy...
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Simulation of shear localization in granular bodies within gradient-enhanced hypoplasticity.
PublicationW artykule przedstawiono wyniki numerycznej analizy ściskania w płaskim stanie odkształcenia dla materiałów granulowanych. Obliczenia przeprowadzono z modelem hipoplastycznym rozszerzonym o gradienty modułu przyrostu odkształceń. Obliczenia wykonano dla różnych długości charakterystycznych w próbce piasku zagęszczonego.
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Secondary emission influenced fluorescence decay of a homogeneous fluorophore solution
PublicationAn analytical expression is found allowing the calculation of the secondary emission influenced fluorescence decay of a homogeneous fluorophore solution. Before starting the calculation one has to know the shape of the primary fluorescence decay of the fluorophore and the value of the parameter kappa denoting the ratio of the secondary to primary steady-state fluorescence intensities. The method elaborated by Budo and Ketskemety...
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Numerical simulations of granular material flow in silos with and without insert
PublicationArtykuł omawia wyniki naporu materiału sypkiego podczas przepływu w silosach z i bez wkładek. Obliczenia wykonano wykorzystując sformułowanie ale na bazie prawa sprężysto-plastycznego według druckera-pragera. Zbadano wpływ kształtu i położenia wkładki na wielkość naporu i rodzaj przepływu.
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Analysis of stress and strains, forces and energy in initial contact zone abrasive grain with treating material
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Effect of Sieve Drum Inclination Angle on Wheat Grain Cleaning in a Novel Rotary Cleaning Device
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Analysis of the Sieve Unit Inclination Angle in the Cleaning Process of Oat Grain in a Rotary Cleaning Device
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Impact of Tensile and Compressive Stress on Classical and Acoustic Barkhausen Effects in Grain-Oriented Electrical Steel
PublicationIn this paper, we present the results of the investigation of impact of tensile and compressive stress on the classical Barkhausen effect, magnetoacoustic emission (MAE) signal properties, and B(H) hysteresis loops for grain-oriented (GO) electrical steel. Samples have been glued to a nonmagnetic steel bar and stressed within elastic range (±800 μdef) by means of four-point bending method. The samples were cut out in two directions...
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Poly(ε-Caprolactone)/Brewers’ Spent Grain Composites—The Impact of Filler Treatment on the Mechanical Performance
PublicationWaste lignocellulose materials, such as brewers’ spent grain, can be considered very promising sources of fillers for the manufacturing of natural fiber composites. Nevertheless, due to the chemical structure differences between polymer matrices and brewers’ spent grain, filler treatment should be included. The presented work aimed to investigate the impact of fillers’ reactive extrusion on the chemical structure and the poly(ε-caprolactone)/brewers’...
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Spam classification methods besed on users e-mail communication graphs
PublicationW artykule poddano analizie grafy zbudowane w oparciu o logi serwerów pocztowych. Węzły grafów reprezentują nadawców i odbiorców wiadomości e-mail natomiast krawędzie przedstawiają procesy wymiany wiadomości e-mail. Analiza grafów pozwala na znalezienie korelacji pomiędzy topologią grafów a relacjami pomiędzy użytkownikami serwisu pocztowego. W oparciu o te relacje zaproponowano algorytm klasyfikujący wymieniane wiadomości e-mail...
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Flow cytometric approach to evaluate the impact of hydro-technical concrete compounds’ release to the freshwater microbiome
PublicationThe aim of this research was to test the potential of applying a flow cytometric procedure to evaluate the impact of concrete compounds’ release to the freshwater microbiome. Cells from the collected samples were stained with a fluorogenic redox indicator dye that measures the redox potential of microbial cells. This novel approach was combined with the assessment of microorganisms’ penetration into the internal structures of concrete...
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The lethal effect of hydrotechnical concrete on freshwater Bivalvia
PublicationMost hydrotechnical buildings under construction demand the concrete mixture to be set directly under water. The main reason for such a procedure is to limit the washing away of the the concrete binding mixture and to increase the efficiency of organisation of work so as to ensure continuity in concreting. The impact on the aquatic environment of recent developments in concrete technology and the use of new components has not yet...
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Pore water alkalinity below the permanent halocline in the Gdańsk Deep (Baltic Sea) - Concentration variability and benthic fluxes
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Strategies for overcoming ABC-transporters-mediated multidrug resistance (MDR) of tumor cells. Review
PublicationOporność wielolekowa (MDR) nowotworów jest główną przyczyną niepowodzeń w chemoterapii przeciwnowotworowej. Jest ona wynikiem nadprodukcji w komórkach opornych transporterów białkowych z nadrodziny ABC, eksportujących cytostatyk z komórki, których działanie uniemożliwia utrzymanie terapeutycznego stężenia leku. W publikacji dokonano przeglądu różnych strategii przeciwdziałania zjawisku MDR. Strategie te dotyczą zarówno kontroli...
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Application of social relation graphs for early detection of transient spammers
PublicationWczesne wykrywanie społecznych zagrożeń i anomalii jest prawdziwym wyzwaniem w dzisiejszch, dynamicznych społeczeństwach. Ludzie tworzą skoplikowane relacje społeczne, które mogą być przedstawione za pomocą różnych typów grafów, których wierzchołki reprezentować mogą aktorów sieci (konkretne osoby lub organizacje) a krawędzie relacje pomiędzy nimi. Analiza tych dynamicznie zmieniających się relacji może wskazywać na niektóre nadciągające...
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Synchronization helps robots to detect black holes in directed graphs
PublicationPraca zawiera nowe wyniki dla problemu poszukiwania czarnej dziury w grafie skierowanym przez zbiór agentów. Czarna dziura jest węzłem niszczącym wszystkich wchodzącej do niej agentów. Pokazano, że w przypadku, gdy stopień wejściowy czarnej dziury wynosi D, do przeszukania grafu skierowanego w modelu synchronicznym wystarcza O(D 2^D) agentów. Wartość ta jest bliska znanemu z literatury oszacowaniu dolnemu Omega (2^D). W pracy pokazano...
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Packing Three-Vertex Paths in 2-Connected Cubic Graphs
PublicationW pracy rozważano problem rozmieszczanie ścieżek P3 w 2-spójnych grafach 3-regularnych. Pokazano, że w 2-spójnym grafie 3-regularnym o n wierzchołkach można zawsze pokryć 9/11 n wierzchołków przez ścieżki P3; podano także odpowiednie oszacowania górne.
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Approximation strategies for routing edge disjoint paths in complete graphs
PublicationPraca dotyczy problemu ścieżek krawędziowo rozłącznych w nieskierowanych grafach pełnych, dla którego podano nowe algorytmy przybliżone: 3.75-przybliżony (model off-line) i 6.47-przybliżony (model on-line). Stosując podobną metodologię, uzyskano algorytm 4.5-przybliżony (off-line) i 6-przybliżony (on-line) dla problemu routingu i kolorowania ścieżek w grafach pełnych.
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Approximation algorithms for job scheduling with block-type conflict graphs
PublicationThe problem of scheduling jobs on parallel machines (identical, uniform, or unrelated), under incompatibility relation modeled as a block graph, under the makespan optimality criterion, is considered in this paper. No two jobs that are in the relation (equivalently in the same block) may be scheduled on the same machine in this model. The presented model stems from a well-established line of research combining scheduling theory...
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Quantum strategies for rendezvous and domination tasks on graphs with mobile agents
PublicationThis paper explores the application of quantum nonlocality, a renowned and unique phenomenon acknowledged as a valuable resource. Focusing on an alternative application, we demonstrate its quantum advantage for mobile agents engaged in specific distributed tasks without communication. The research addresses the significant challenge of rendezvous on graphs and introduces a distributed task for mobile agents grounded in the graph...
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Equitable colorings of some variation of corona products of cubic graphs
PublicationThe problem of determining the value of equitable chromatic number for multicoronas of cubic graphs is studied. We provide some polynomially solvable cases of cubical multicoronas and give simple linear time algorithms for equitable coloring of such graphs which use almost optimal number of colors in the remaining cases.
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Modelling and analysis of beam/bar structure by application of bond graphs
PublicationThe paper presents an uniform, port-based approach to modelling of beam/bar systems (trusses). Port-based model of such distributed parameter system has been defined by application of the bond graph methodology and the distributed transfer function method (DTFM). The proposed method of modelling enables to formulate input data for computer analysis by application of the DTFM. The constructed computational package enables the frequency...
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Weakly convex and convex domination numbers of some products of graphs
PublicationIf $G=(V,E)$ is a simple connected graph and $a,b\in V$, then a shortest $(a-b)$ path is called a $(u-v)$-{\it geodesic}. A set $X\subseteq V$ is called {\it weakly convex} in $G$ if for every two vertices $a,b\in X$ exists $(a-b)$- geodesic whose all vertices belong to $X$. A set $X$ is {\it convex} in $G$ if for every $a,b\in X$ all vertices from every $(a-b)$-geodesic belong to $X$. The {\it weakly convex domination number}...
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Average distance is submultiplicative and subadditive with respect to the strong product of graphs
PublicationWe show that the average distance is submultiplicative and subadditive on the set of non-trivial connected graphs with respect to the strong product. We also give an application of the above-mentioned result.
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An Efficient Noisy Binary Search in Graphs via Median Approximation
PublicationConsider a generalization of the classical binary search problem in linearly sorted data to the graph-theoretic setting. The goal is to design an adaptive query algorithm, called a strategy, that identifies an initially unknown target vertex in a graph by asking queries. Each query is conducted as follows: the strategy selects a vertex q and receives a reply v: if q is the target, then =, and if q is not the target, then v is a...