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Genetic Programming for Workload Balancing in the Comcute Grid System
PublicationA genetic programming paradigm is implemented for reliability optimization in the Comcute grid system design. Chromosomes are generated as the program functions and then genetic operators are applied for finding Pareto-suboptimal task assignment and scheduling. Results are compared with outcomes obtained by an adaptive evolutionary algorithm.
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Genetic Programming for Interaction Efficient Supporting in Volunteer Computing Systems
PublicationVolunteer computing systems provide a middleware for interaction between project owners and great number volunteers. In this chapter, a genetic programming paradigm has been proposed to a multi-objective scheduler design for efficient using some resources of volunteer computers via the web. In a studied problem, genetic scheduler can optimize both a workload of a bottleneck computer and cost of system. Genetic programming has been...
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Genetic Programming with Negative Selection for Volunteer Computing System Optimization
PublicationVolunteer computing systems like BOINC or Comcute are strongly supported by a great number of volunteers who contribute resources of their computers via the Web. So, the high efficiency of such grid system is required, and that is why we have formulated a multi-criterion optimization problem for a volunteer grid system design. In that dilemma, both the cost of the host system and workload of a bottleneck host are minimized. On...
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Genetic programming extension to APF-based monocular human body pose estimation
PublicationNew method of the human body pose estimation based on a single camera 2D observation is presented, aimed at smart surveillance related video analysis and action recognition. It employs 3D model of the human body, and genetic algorithm combined with annealed particle filter for searching the global optimum of model state, best matching the object's 2D observation. Additionally, new motion cost metric is employed, considering current...
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Big Data Paradigm Developed in Volunteer Grid System with Genetic Programming Scheduler
PublicationArtificial intelligence techniques are capable to handle a large amount of information collected over the web. In this paper, big data paradigm has been studied in volunteer and grid system called Comcute that is optimized by a genetic programming scheduler. This scheduler can optimize load balancing and resource cost. Genetic programming optimizer has been applied for finding the Pareto solu-tions. Finally, some results from numerical...
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Hierarchical Estimation of Human Upper Body Based on 2D Observation Utilizing Evolutionary Programming and 'Genetic Memory'
PublicationNew method of the human body pose estimation based on single camera 2D observation is presented. It employs 3D model of the human body, and genetic algorithm combined with annealed particle filter for searching the global optimum of model state, best matching the object's 2D observation. Additionally, motion cost metric is employed, considering current pose and history of the body movement, favouring the estimates with the lowest...
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Pathogenesis of psoriasis in the “omic” era. Part II. Genetic, genomic and epigenetic changes in psoriasis
PublicationPsoriasis is a multifactorial disease in which genetic, environmental and epigenetic factors regulating gene expression play a key role. In the “genomic era”, genome-wide association studies together with target genotyping platforms performed in different ethnic populations have found more than 50 genetic susceptible markers associated with the risk of psoriasis which have been identified so far. Up till now, the strongest association...
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Semi-definite programming and quantum information
PublicationThis paper presents a comprehensive exploration of semi-definite programming (SDP) techniques within the context of quantum information. It examines the mathematical foundations of convex optimization, duality, and SDP formulations, providing a solid theoretical framework for addressing optimization challenges in quantum systems. By leveraging these tools, researchers and practitioners can characterize classical and quantum correlations,...
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Properties of dimension witnesses and their semidefinite programming relaxations
PublicationIn this paper we develop a method for investigating semi-device-independent randomness expansion protocols that was introduced in Li et al. [H.-W. Li, P. Mironowicz, M. Pawłowski, Z.-Q. Yin, Y.-C. Wu, S. Wang, W. Chen, H.-G. Hu, G.-C. Guo, and Z.-F. Han, Phys. Rev. A 87, 020302(R) (2013)]. This method allows us to lower bound, with semi-definite programming, the randomness obtained from random number generators based on dimension...
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ARCHITECTURAL PROGRAMMING FOR BALANCED LOCAL URBAN CENTERS
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Programming Geometry as a Creative Play with Architectural Form
PublicationIn the twenty-first century "programming" is the key word that opens unprecedented opportunities for design and materialization of geometrically complex architectural objects. From the digital designer perspective programming geometry can be seen as a creative play with a form and a process of generation/exploration as well as the possibility of applying the computing power as a co-designer in the process of finding solutions for...
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Testing for conformance of parallel programming pattern languages
PublicationThis paper reports on the project being run by TUG and IMAG, aimed at reducing the volume of tests required to exercise parallel programming language compilers and libraries. The idea is to use the ISO STEP standard scheme for conformance testing of software products. A detailed example illustrating the ongoing work is presented.
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Realization, programming and controlling of the Stewart-Gough platform
PublicationThis paper presents realizaon, programming, and controlling of a low cost Stewart-Gough plaorm (SGP) with rotary actuators. The realized SGP is applied in a ball & plate control system. Developed dedicated software consists of embedded and applicaon soware for both the SGP posioning system and the ball & plate control. system. A ball posion is being obtained using computer vision. The paper contains tests results for both an SGP...
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A Simple Model of Linkage Disequilibrium and Genetic Drift in Human Genomic SNPs: Importance of Demography and SNP Age
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Multi-Objective Portfolio Optimization by Mixed Integer Programming
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Parallel Programming for Modern High Performance Computing Systems
PublicationIn view of the growing presence and popularity of multicore and manycore processors, accelerators, and coprocessors, as well as clusters using such computing devices, the development of efficient parallel applications has become a key challenge to be able to exploit the performance of such systems. This book covers the scope of parallel programming for modern high performance computing systems. It first discusses selected and...
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Quadratic programming approach to coupled resonator filter cad
PublicationArtykuł prezentuje technikę komputerowego wspomagania procesu projektowania filtrów zbliżeniowych. Polega ona na sformułowaniu macierzy sprzężeń jako problemu programowania kwadratowego (QP). Dzięki zdefiniowaniu procedury optymalizacyjnej jako problemu QP, przy założeniu liniowej zależności współczynników sprzężeń od wymiarów geometrycznych struktury, uzyskano znaczącą redukcję liczby pełnofalowych symulacji prowadzących do uzyskania...
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Analysis of the impact of aspect-oriented programming on source code quality
PublicationCelem rozprawy jest ocena wpływu paradygmatu aspektowego na: modularność, możliwość dalszego rozwoju oraz ponowne użycie oprogramowania. Jako punkt odniesienia do oceny paradygmatu aspektowego wybrano paradygmat obiektowy. W ramach pracy przeprowadzono studium przypadków, w którym zbadano implementacje obiektowe oraz aspektowe 11 rzeczywistych systemów i 23 wzorców projektowych. Ponadto zrealizowano kontrolowany eksperyment, w...
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Solving nonlinear programming problems by using O&G software.
PublicationPraca opisuje pakiet optymalizacyjny oprogramowania O&G. Umożliwia on rozwiązywanie problemów programowania nieliniowego. Użytkownik może w wygodny sposób formułować rozwiązywane zadanie i dobierać metody obliczeniowe używając interaktywnego interfejsu.
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Concept of Generic IT Organization Evolution Model
PublicationThe purpose of this publication is to present a generic model of the IT organization evaluation process as an attempt to systematize and describe the continuous actions and changes in the organization.
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Shadowing is generic---a continuous map case
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Selected multiobjective methods for multiperiod portfolio optimization by mixed integer programming
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Application of multi-criteria mathematical programming models for assignment of services in a hospital
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Survey of multi-objective portfolio optimization by linear and mixed integer programming
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Effective methods for functional confermance testing of parallel and distributed programming libraries.
PublicationRozprawa przedstawia kompletna metodykę tworzenia Zestawów Testów Zgodności dla języków programowania, bibliotek i API, ze szczególnym uwzględnieniem języków i bibliotek programowania równoleglego i rozproszonego. Autor rozpoczął badania w dziedzinie testowania zgodności dla bibliotek programowania równoleglego i rozproszonego, ale Metodyka Kolejnych zawężeń (ang. Consecutive Confinenments Method -CoCoM, stworzona przez Autora,...
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Method of selecting programming practices for the safety-critical software development projects
PublicationIn recent years a plan-driven approach traditionally used in safety-critical software development has been put to a test by rapidly changing technologies, more diverse group of clients and volatile market requirements. The need to deliver good quality systems, faster and at lower cost in comparison to competitors encouraged companies to look for more efficient solutions. Agile methodologies are known to successfully address these...
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Practical Use of Generic IT Organization Evolution Model
PublicationIn the paper we analyze, basing on the practical experiences, how the Generic IT Organization Model could be used to describe evolution of real-world IT support organization in relation to IT Service Management area.
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Pose-Configurable Generic Tracking of Elongated Objects
PublicationElongated objects have various shapes and can shift, rotate, change scale, and be rigid or deform by flexing, articulating, and vibrating, with examples as varied as a glass bottle, a robotic arm, a surgical suture, a finger pair, a tram, and a guitar string. This generally makes tracking of poses of elongated objects very challenging. We describe a unified, configurable framework for tracking the pose of elongated objects, which...
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Generic emergence of classical features in quantum Darwinism
PublicationQuantum Darwinism posits that only specific information about a quantum system that is redundantly proliferated to many parts of its environment becomes accessible and objective, leading to the emergence of classical reality. However, it is not clear under what conditions this mechanism holds true. Here we prove that the emergence of classical features along the lines of quantum Darwinism is a general feature of any quantum dynamics:...
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Generic appearance of objective results in quantum measurements
PublicationMeasurement is of central interest in quantum mechanics as it provides the link between the quantum world and the world of everyday experience. One of the features of everyday experience is its robust, objective character, contrasting the delicate nature of quantum systems. Here we analyze in a completely model-independent way the celebrated von Neumann measurement process, using recent techniques of information flow, studied in...
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A single and triple-objective mathematical programming models for assignment of services in a healthcare institution
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Lexicographic and weighting approach to multi-criteria portfolio optimization by mixed integer programming
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Ontology supported selection of versions for N-version programming in semantic web services
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Optimal programming of critical sections in modern network processors under performance requirements.
PublicationPrzegląd konstrukcji i zastosowań metod programowania sekcji krytycznych w nowoczesnych procesorach sieciowych rodziny Intel IXP. Porównanie wydajnościowe w formie tabeli.
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Programming, tunning and automatic parallelization of irregular divide and conquer applications in DAMPVM/DAC.
PublicationArtykuł prezentuje nowy, obiektowo zorientowany wzorzec programowy DAMPVM/DAC, który zimplementowany został z użyciem systemu DAMPVM i umożliwia automatyczny podział nieregularnych aplikacji "Dziel i zwyciężaj" (DAC) w czasie ich działania.
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Survey of Methodologies, Approaches, and Challenges in Parallel Programming Using High-Performance Computing Systems
PublicationThis paper provides a review of contemporary methodologies and APIs for parallel programming, with representative technologies selected in terms of target system type (shared memory, distributed, and hybrid), communication patterns (one-sided and two-sided), and programming abstraction level. We analyze representatives in terms of many aspects including programming model, languages, supported platforms, license, optimization goals,...
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Dynamical description of quantum computing: generic nonlocality of quantumnoise
PublicationWe develop a dynamical non-Markovian description of quantum computing in the weak-coupling limit, in the lowest-order approximation. We show that the long-range memory of the quantum reservoir (such as the 1/t4 one exhibited by electromagnetic vacuum) produces a strong interrelation between the structure of noise and the quantum algorithm, implying nonlocal attacks of noise. This shows that the implicit assumption of quantum error...
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Generic invariant measures for iterated systems of interval homeomorphisms
PublicationIt is well known that iterated function systems generated by orientation preserving homeomorphisms of the unit interval with positive Lyapunov exponents at its ends admit a unique invariant measure on (0, 1) provided their action is minimal. With the additional requirement of continuous differentiability of maps on a fixed neighbourhood of {0,1} { 0 , 1 } , we present a metric in the space of such systems which renders it complete....
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BatchI: Batch effect Identification in high-throughput screening data using a dynamic programming algorithm
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Optimization of Data Assignment for Parallel Processing in a Hybrid Heterogeneous Environment Using Integer Linear Programming
PublicationIn the paper we investigate a practical approach to application of integer linear programming for optimization of data assignment to compute units in a multi-level heterogeneous environment with various compute devices, including CPUs, GPUs and Intel Xeon Phis. The model considers an application that processes a large number of data chunks in parallel on various compute units and takes into account computations, communication including...
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A multithreaded CUDA and OpenMP based power‐aware programming framework for multi‐node GPU systems
PublicationIn the paper, we have proposed a framework that allows programming a parallel application for a multi-node system, with one or more GPUs per node, using an OpenMP+extended CUDA API. OpenMP is used for launching threads responsible for management of particular GPUs and extended CUDA calls allow to manage CUDA objects, data and launch kernels. The framework hides inter-node MPI communication from the programmer who can benefit from...
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Genetic predisposition to inflammatory bowel disease
PublicationInflammatory bowel disease (IBD) is a chronic, incurable inflammatory disease of the digestive system. The two main disease entities included in the IBD are ulcerative colitis and Crohn's disease. According to epidemiological studies there are more and more new cases every year. In especially among the youngest patients with symptoms of malnutrition and growth inhibition to land up in hospitalwith cancer suspected. The purpose...
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Genetic Influences on Insulinemia in Normotensive Twins
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Genetic ANFIS for scheduling in telecommunication networks
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Genetic and Epigenetic Aspects of Atopic Dermatitis
PublicationAtopic dermatitis is a heterogeneous disease, in which the pathogenesis is associated with mutations in genes encoding epidermal structural proteins, barrier enzymes, and their inhibitors; the role of genes regulating innate and adaptive immune responses and environmental factors inducing the disease is also noted. Recent studies point to the key role of epigenetic changes in the development of the disease. Epigenetic modifications...
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IFI16 Impacts Metabolic Reprogramming during Human Cytomegalovirus Infection
PublicationCellular lipid metabolism plays a pivotal role in human cytomegalovirus (HCMV) infection, as increased lipogenesis in HCMV-infected cells favors the envelopment of newly synthesized viral particles. As all cells are equipped with restriction factors (RFs) able to exert a protective effect against invading pathogens, we asked whether a similar defense mechanism would also be in place to preserve the metabolic compartment from HCMV...
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Initializing the EM Algorithm for Univariate Gaussian, Multi-Component, Heteroscedastic Mixture Models by Dynamic Programming Partitions
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Adaptive Optimal Discrete-Time Output-Feedback Using an Internal Model Principle and Adaptive Dynamic Programming
PublicationIn order to address the output feedback issue for linear discrete-time systems, this work suggests a brand-new adaptive dynamic programming (ADP) technique based on the internal model principle (IMP). The proposed method, termed as IMP-ADP, does not require complete state feedback, merely the measurement of input and output data. More specifically, based on the IMP, the output control problem can first be converted into a stabilization...
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An Improved Genetic Algorithm for Island Route Planning
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Genetic features of clinical Pseudomonas aeruginosa strains
PublicationW grupie 62 izolatów klinicznych sprawdzono obecność 6 wybranych czynnikow wirulencji. We wcześniejszych badaniach z wykorzystaniem techniki ERIC - PCR wykazano, że w analizowanej grupie 49 (79%) to szczepy, o dużum podobieństwie genetycznym (ponad 62%), każdy z pozostałych 13 izolatów zaliczono do osobnego genotypu, o zdecydownie niższym stopniu pokrewieństwa. W przypadku wszystkich 49 szczepów z pierwszej grupy stwierdzono obecność...