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Search results for: TREE METRICS
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Analyzing sets of phylogenetic trees using metrics
PublicationThe reconstruction of evolutionary trees is one of the primary objectives in phylogenetics. Such a tree represents historical evolutionary relationships between different species or organisms. Tree comparisons are used for multiple purposes, from unveiling the history of species to deciphering evolutionary associations among organisms and geographical areas. In this paper, we describe a general method for comparing phylogenetictrees...
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Properties of the triset metric for phylogenetic trees
Publicationthe following paper presents a new polynomial time metric for unrootedphylogenetic trees (based on weighted bipartite graphs and the method ofdetermining a minimum perfect matching) and its properties. also many its properties are presented.
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Polynomial triset metric for unrooted phylogenetic trees
Publicationthe following paper presents a polynomial triset metric for unrooted phylogenetic trees (based on weighted bipartite graphs and the method of determining a minimum edge cover) and its basic characteristics. also a list of further directions of research and examples of the wider use of this metric is presented.
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Analyzing sets of phylogenetic trees obtained from bayesian MCMC process using topology metrics
PublicationThe reconstruction of evolutionary trees is one of the primary objectives in phylogenetics. Such a tree represents historical evolutionary relationship between different species or organisms. Tree comparisons are used for multiple purposes, from unveiling the history of species to deciphering evolutionary associations amongorganisms and geographical areas.In the paper, we describe a general method for comparing hylogenetic trees....
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TREE PHYSIOLOGY
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Metrics for green analytical chemistry
PublicationGreen analytical chemistry, although not being a new concept, does not have a greenness metrics system. Green chemistry metrics are not suitable for analytical procedure assessment because they often refer to the mass of the product. Some efforts have been made to develop suitable metrics for analytical chemistry. Some are simple to use but do not cover all aspects of analytical methods’ environmental impact. Others are more comprehensive...
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FREE RADICAL BIOLOGY AND MEDICINE
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Green analytical chemistry metrics: A review
PublicationGreen analytical chemistry encourages reducing the use of toxic chemicals/reagents, using energy-efficient equipment, and generating minimal waste. The recent trends in analytical method development focus on the miniaturization of the sample preparation devices, the development of solventless or solvent-minimized extraction techniques, and the utilization of less toxic solvents. The twelve principles of GAC serve as a basic guideline...
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FREE RADICAL RESEARCH
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Tree-Ring Research
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Tree Genetics & Genomes
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The variability of macrophyte metrics used in river monitoring
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Sound quality metrics applied to road noise evaluation
PublicationRoad noise monitoring systems typically measure sound levels in specific time periods. The more insightful approach suggests to measure also the nature of noise. Sound quality of sounds such as car noise can be objectively evaluated by several parameters. One of them is psychoacoustic annoyance, described by loudness, tone color, and the temporal structure of sound. In this paper the assessment of several sound quality parameters, such...
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On properties of visual quality metrics in remote sensing applications
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On the Usefulness of Combined Metrics for 3D Image Quality Assessment
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Web Services Integration with Regard to the Metrics of Data Believability
PublicationThe paper is concerned with estimating the believability of data acquired from web services. In the paper, a new method for believability estimation is introduced. The method is designed for integrating web services. The believability estimation is based on the following metrics: quantity, reputation, approval, independence, traceability, maturity, authority and objectivity. In the method, data trustworthiness is determined by...
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Aiming at methods’ wider adoption: Applicability determinants and metrics
PublicationNumerous computer science methods and techniques have been proposed by the scientific community. However, depending on the domain, only their minor fraction has met wider adoption. This paper brings attention to the concept of applicability - the notion that is well acknowledged in the scientific field but have not been analysed with respect to determinants, metrics and systematisation. The primary objective of the study was to...
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Ranking metrics in gene set enrichment analysis: do they matter?
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Quality Assessment of Images with Multiple Distortions using Combined Metrics
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Mobile Video Quality Assessment: A Current Challenge for Combined Metrics
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Quality Assessment of 3D Prints Based on Feature Similarity Metrics
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Daylight metrics and requirements: A review of reference documents for architectural practice
PublicationDaylight has always been part of architectural practice since architects have used it to define spaces and create complex structures. Daylighting is, nowadays, seen as key strategy for sustainability, energy efficiency and resilience in buildings. This article aims to investigate daylight requirements in reference documents for architectural practice through the collection and qualitative analysis of documents. 117 reference documents...
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Generalization of Phylogenetic Matching Metrics with Experimental Tests of Practical Advantages
PublicationThe ability to quantify a dissimilarity of different phylogenetic trees is required in various types of phylogenetic studies, for example, such metrics are used to assess the quality of phylogeny construction methods and to define optimization criteria in supertree building algorithms. In this article, starting from the already described concept of matching metrics, we define three new metrics for rooted phylogenetic trees. One...
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Green Chemistry Metrics with Special Reference to Green Analytical Chemistry
PublicationThe concept of green chemistry is widely recognized in chemical laboratories. To properly measure an environmental impact of chemical processes, dedicated assessment tools are required. This paper summarizes the current state of knowledge in the field of development of green chemistry and green analytical chemistry metrics. The diverse methods used for evaluation of the greenness of organic synthesis, such as eco-footprint, E-Factor,...
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PLoS Currents-Tree of Life
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A comparison of three solvent-free techniques coupled with gas chromatography for determining trihalomethanes in urine samples
PublicationDążenie do oznaczania lotnych analitów organicznych w próbkach płynów biologicznych charakteryzujących się złożonym, a często zmiennym składem matrycy, stanowi siłę napędową do działań analityków w zakresie poszukiwania nowych rozwiązań metodycznych i aparaturowych. Publikacja ta przedstawia porównanie trzech technik zastosowanych do tych celów: technikę analizy fazy nadpowierzchniowej z generacją strumienia ciekłego sorbentu...
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On the metric dimension of corona product graphs
PublicationWe give several results on the metric dimension of corona product graphs.
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Searching for metric structure of musical files
PublicationCelem opisywanych prac jest porównanie efektywności wybranych metod sztucznej inteligencji w wyznaczaniu rytmu dla zapisu symbolicznego muzyki. Opisano sposób wykorzystania sztucznych sieci neuronowych i zbiorów przybliżonych do poszukiwania właściwej struktury rytmicznej utworu. Analizowane są fizyczne atrybuty dźwięku, które są najbardziej znaczące dla określenia położenia dźwięku na pozycji akcentowanej lub nieakcentowanej....
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Situational Awareness Network for the Electric Power System: the Architecture and Testing Metrics
PublicationThe contemporary electric power system is highly dependent on Information and Communication Technologies which results in its exposure to new types of threats, such as Advanced Persistent Threats (APT) or Distributed-Denial-of-Service (DDoS) attacks. The most exposed components are Industrial Control Systems in substations and Distributed Control Systems in power plants. Therefore, it is necessary to ensure the cyber security of...
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Application of Structural Similarity Based Metrics for Quality Assessment of 3D Prints
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EXPERIMENTAL ANALYSIS OF CONNECTION BETWEEN OBJECT-ORIENTED METRICS AND SOFTWARE CHANGEABILITY
PublicationFor the purpose of video surveillance software quality assessment in this work the ISO/IEC-9126 norm was used with a particular focus on maintainability of the software system. The paper presents a study on the connection between software metrics derived from the static analysis of the source code and changeability of the video surveillance software system. It is shown that meeting requirements of software quality metrics may result...
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The Literacy Trek
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Fuzzy Gaussian Decision Tree
PublicationThe Decision Tree algorithm is one of the first machine learning algorithms developed. It is used both as a standalone model and as an ensemble of many cooperating trees like Random Forest, AdaBoost, Gradient Boosted Trees, or XGBoost. In this work, a new version of the Decision Tree was developed for classifying real-world signals using Gaussian distribution functions and a fuzzy decision process. The research was carried out...
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The complexity of bicriteria tree-depth
PublicationThe tree-depth problem can be seen as finding an elimination tree of minimum height for a given input graph G. We introduce a bicriteria generalization in which additionally the width of the elimination tree needs to be bounded by some input integer b. We are interested in the case when G is the line graph of a tree, proving that the problem is NP-hard and obtaining a polynomial-time additive 2b-approximation algorithm. This particular...
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A note on mixed tree coloring
PublicationZaproponowano liniowy algorytm dla problemu kolorowania mieszanego w drzewach, uzyskując tym samym poprawę w stosunku do algorytmu o złożoności O(n^2) podanego w pracy [P. Hansen, J. Kuplinsky, D. de Werra, Mixed graph colorings, Math. Methods Oper. Res. 45 (1997) 145-160].
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The reliability of tree and star networks.
PublicationOne of the important parameters characterizing the quality of computer networks is the network's reliability with respect to failures of the communication links and nodes. This chapter investigated the reliability of tree and star networks. The tree and star topology is used in centralized computer networks. In centralized computer networks all communication must take place through some central computer. Following measures of network...
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Perfect hashing tree automata
PublicationWe present an algorithm that computes a function that assigns consecutive integers to trees recognized by a deterministic, acyclic, finite-state, bottom-up tree automaton. Such function is called minimal perfect hashing. It can be used to identify trees recognized by the automaton. Its value may be seen as an index in some other data structures. We also present an algorithm for inverted hashing.Przedstawiamy algorytm, który oblicza...
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The reliability of tree and star networks
PublicationThis paper investigated the reliability of tree and star networks. Following measures of network reliability are assumed: the expected number of nodes, that can communicate with the central node; the expected number of node pairs, that are connected by a path through the central node; the expected number of node pairs communicating.
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Simple connection matrices
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Simulation of the visual self-localization of mobile robots based on image similarity metrics
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AGREE—Analytical GREEnness Metric Approach and Software
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AGREE—Analytical GREEnness Metric Approach and Software
PublicationGreen analytical chemistry focuses on making analytical procedures more environmentally benign and safer to humans. The amounts and toxicity of reagents, generated waste, energy requirements, the number of procedural steps, miniaturization, and automation are just a few of the multitude of criteria considered when assessing an analytical methodology’s greenness. The use of greenness assessment criteria requires dedicated tools. We...
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AGREEprep – Analytical greenness metric for sample preparation
PublicationThis work proposes for the first time, a metric tool that gives prominence to sample preparation. The developed metric (termed AGREEprep) was based on 10 categories of impact that were recalculated to 0 e1 scale sub-scores, and then used to calculate the final assessment score. The criteria of assessment evaluated, among others, the choice and use of solvents, materials and reagents, waste generation, energy consumption, sample...
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Professional Ethics of Social Entrepreneurs: The Perspective of Christian Personalist Ethics
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Combined Full-Reference Image Quality Metrics for Objective Assessment of Multiply Distorted Images
PublicationIn the recent years, many objective image quality assessment methods have been proposed by different researchers, leading to a significant increase in their correlation with subjective quality evaluations. Although many recently proposed image quality assessment methods, particularly full-reference metrics, are in some cases highly correlated with the perception of individual distortions, there is still a need for their verification...
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Sensitivity, Specificity and Prioritization of Gene Set Analysis When Applying Different Ranking Metrics
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Selecting an Applicable Cybersecurity Assessment Framework: Qualitative Metrics-Based Multiple-Factor Analysis
PublicationRecently, a survey of cybersecurity assessment methods focused on general characteristics was conducted. Among its major findings, it revealed the methods’ adoption issues. This paper presents a follow-up to the study. It provides an in-depth analysis of the methods’ adoption-related properties based on qualitative metrics. As a result, the proposals which demonstrate a higher adoption potential were identified. The methods are...
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Population Health Metrics
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Performance Measurement and Metrics
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GPGPU Based Estimation of the Combined Video Quality Metric
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