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Catalog Publications

Year 2008
Year 2010
Year 2021
  • T-colorings, divisibility and circular chromatic number

    Let T be a T-set, i.e., a finite set of nonnegative integers satisfying 0 ∈ T, and G be a graph. In the paper we study relations between the T-edge spans espT (G) and espd⊙T (G), where d is a positive integer and d ⊙ T = {0 ≤ t ≤ d (max T + 1): d |t ⇒ t/d ∈ T} . We show that espd⊙T (G) = d espT (G) − r, where r, 0 ≤ r ≤ d − 1, is an integer that depends on T and G. Next we focus on the case T = {0} and show that espd⊙{0} (G) =...

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  • Total chromatic sum for trees
    Publication

    - Year 2021

    The total chromatic sum of a graph is the minimum sum of colors (natural numbers) taken over all proper colorings of vertices and edges of a graph. We provide infinite families of trees for which the minimum number of colors to achieve the total chromatic sum is equal to the total chromatic number. We construct infinite families of trees for which these numbers are not equal, disproving the conjecture from 2012.

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  • Total Completion Time Minimization for Scheduling with Incompatibility Cliques
    Publication

    - Year 2021

    This paper considers parallel machine scheduling with incompatibilities between jobs. The jobs form a graph equivalent to a collection of disjoint cliques. No two jobs in a clique are allowed to be assigned to the same machine. Scheduling with incompatibilities between jobs represents a well-established line of research in scheduling theory and the case of disjoint cliques has received increasing attention in recent...

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  • Towards Cancer Patients Classification Using Liquid Biopsy

    Liquid biopsy is a useful, minimally invasive diagnostic and monitoring tool for cancer disease. Yet, developing accurate methods, given the potentially large number of input features, and usually small datasets size remains very challenging. Recently, a novel feature parameterization based on the RNA-sequenced platelet data which uses the biological knowledge from the Kyoto Encyclopedia of Genes and Genomes, combined with a classifier...

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  • Transcriptomic landscape of blood platelets in healthy donors
    Publication
    • A. Supernat
    • M. Popęda
    • K. Pastuszak
    • M. G. Best
    • P. Gresner
    • S. In ‘t Veld
    • B. Siek
    • N. Bednarz-Knoll
    • M. T. Rondina
    • T. Stokowy... and 3 others

    - Scientific Reports - Year 2021

    BACKGROUND Blood platelet RNA-sequencing is increasingly used among the scientific community. Aberrant platelet transcriptome is common in cancer or cardiovascular disease, but reference data on platelet RNA content in healthy individuals are scarce and merit complex investigation. METHODS We sought to explore the dynamics of platelet transcriptome. Datasets from 204 healthy donors were used for the analysis of splice variants,...

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  • Transcriptomic landscape of blood platelets in healthy donors
    Publication
    • A. Supernat
    • M. Popęda
    • K. Pastuszak
    • M. G. Best
    • P. Grešner
    • S. I. ’. Veld
    • B. Siek
    • N. Bednarz-Knoll
    • M. T. Rondina
    • T. Stokowy... and 3 others

    - Scientific Reports - Year 2021

    Blood platelet RNA-sequencing is increasingly used among the scientific community. Aberrant platelet transcriptome is common in cancer or cardiovascular disease, but reference data on platelet RNA content in healthy individuals are scarce and merit complex investigation. We sought to explore the dynamics of platelet transcriptome. Datasets from 204 healthy donors were used for the analysis of splice variants, particularly with...

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  • User experience and user interface (UX/UI) design of Greencoin mobile application.
    Publication

    The aim of the Greencoin mobile application is to encourage its users to change their behavior and to act pro-ecologically. The pilot version of the application will operate within the city of Gdańsk. To keep the app’s user base as large as possible, the graphical user interface should be attractive to the broadest possible audience, and the application itself should be easy and fun to use. This work is a continuation of studies...

Year 2024
  • Teoria grafów wczoraj i dziś
    Publication

    - Year 2024

    W pracy naszkicowano kamienie milowe teorii grafów poczynając od pierwszego artykułu Eulera na temat mostów w Królewcu z połowy 18. wieku. Następnie opisano słynny problem 4 barw i jego wariacje. Pracę kończy charakterystyka najnowszych wyzwań teorii grafów.

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Year 2015
  • The Backbone Coloring Problem for Bipartite Backbones

    Let G be a simple graph, H be its spanning subgraph and λ≥2 be an integer. By a λ -backbone coloring of G with backbone H we mean any function c that assigns positive integers to vertices of G in such a way that |c(u)−c(v)|≥1 for each edge uv∈E(G) and |c(u)−c(v)|≥λ for each edge uv∈E(H) . The λ -backbone chromatic number BBCλ(G,H) is the smallest integer k such that there exists a λ -backbone coloring c of G with backbone H satisfying...

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  • The complexity of minimum-length path decompositions
    Publication

    - JOURNAL OF COMPUTER AND SYSTEM SCIENCES - Year 2015

    We consider a bi-criteria generalization of the pathwidth problem, where, for given integers k, l and a graph G, we ask whether there exists a path decomposition P of G such that the width of P is at most k and the number of bags in P, i.e., the length of P, is at most l. We provide a complete complexity classification of the problem in terms of k and l for general graphs. Contrary to the original pathwidth problem, which is fixed-parameter...

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  • The complexity of zero-visibility cops and robber
    Publication

    - THEORETICAL COMPUTER SCIENCE - Year 2015

    We consider the zero-visibility cops & robber game restricted to trees. We produce a characterisation of trees of copnumber k and We consider the computational complexity of the zero-visibility Cops and Robber game. We present a heavily modified version of an already-existing algorithm that computes the zero-visibility copnumber of a tree in linear time and we show that the corresponding decision problem is NP-complete on a nontrivial...

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  • The computational complexity of the backbone coloring problem for bounded-degree graphs with connected backbones

    Given a graph G, a spanning subgraph H of G and an integer λ>=2, a λ-backbone coloring of G with backbone H is a vertex coloring of G using colors 1, 2, ..., in which the color difference between vertices adjacent in H is greater than or equal to lambda. The backbone coloring problem is to find such a coloring with maximum color that does not exceed a given limit k. In this paper, we study the backbone coloring problem for bounded-degree...

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  • The computational complexity of the backbone coloring problem for planar graphs with connected backbones

    In the paper we study the computational complexity of the backbone coloring problem for planar graphs with connected backbones. For every possible value of integer parameters λ≥2 and k≥1 we show that the following problem: Instance: A simple planar graph GG, its connected spanning subgraph (backbone) HH. Question: Is there a λ-backbone coloring c of G with backbone H such that maxc(V(G))≤k? is either NP-complete or polynomially...

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  • The searchlight problem for road networks
    Publication

    - THEORETICAL COMPUTER SCIENCE - Year 2015

    We consider the problem of searching for a mobile intruder hiding in a road network given as the union of two or more lines, or two or more line segments, in the plane. Some of the intersections of the road network are occupied by stationary guards equipped with a number of searchlights, each of which can emit a single ray of light in any direction along the lines (or line segments) it is on. The goal is to detect the intruder,...

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  • Towards the boundary between easy and hard control problems in multicast Clos networks

    In this article we study 3-stage Clos networks with multicast calls in general and 2-cast calls, in particular. We investigate various sizes of input and output switches and discuss some routing problems involved in blocking states. To express our results in a formal way we introduce a model of hypergraph edge-coloring. A new class of bipartite hypergraphs corresponding to Clos networks is studied. We identify some polynomially...

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  • Unicyclic graphs with equal total and total outer-connected domination numbers
    Publication

    - ARS COMBINATORIA - Year 2015

    Let G = (V,E) be a graph without an isolated vertex. A set D ⊆ V (G) is a total dominating set if D is dominating and the in- duced subgraph G[D] does not contain an isolated vertex. The total domination number of G is the minimum cardinality of a total domi- nating set of G. A set D ⊆ V (G) is a total outer–connected dominating set if D is total dominating and the induced subgraph G[V (G)−D] is a connected graph. The total outer–connected...

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Year 2014
  • The Backbone Coloring Problem for Small Graphs

    In this paper we investigate the values of the backbone chromatic number, derived from a mathematical model for the problem of minimization of bandwidth in radio networks, for small connected graphs and connected backbones (up to 7 vertices). We study the relationship of this parameter with the structure of the graph and compare the results with the solutions obtained using the classical graph coloring algorithms (LF, IS), modified...

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  • The Complexity of Zero-Visibility Cops and Robber
    Publication

    - Year 2014

    In this work we deal with the computational complexity aspects of the zero-visibility Cops and Robber game. We provide an algorithm that computes the zero-visibility copnumber of a tree in linear time and show that the corresponding decision problem is NP-complete even for the class of starlike graphs.

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  • Time versus space trade-offs for randezvous in trees
    Publication

    - DISTRIBUTED COMPUTING - Year 2014

    Two identical (anonymous) mobile agents start from arbitrary nodes of an unknown tree and have to meet at some node. Agents move in synchronous rounds: in each round an agent can either stay at the current node or move to one of its neighbors. We consider deterministic algorithms for this rendezvous task. The main result of this paper is a tight trade-off between the optimal time of completing rendezvous and the size of memory...

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Year 2007
  • The circular chromatic index of some class 2 graphs
    Publication

    W artykule został wyznaczony cyrkularny indeks chromatyczny dla dwóch rodzin grafów klasy 2. Co więcej, podano nie trywialne oszacowania tego parametru dla snarków Isaacsa i Goldberga. Na koniec artykułu rozważana jest złożoność obliczeniowa problemów związanych z cyrkularnym kolorowaniem krawędzi.

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Year 2005
  • The complexity of equitable vertex coloring graphs
    Publication

    - Year 2005

    W artykule podajemy wzory na sprawiedliwą liczbę chromatyczną niektórych produktów grafowych. Ponadto przedstawiamy dwa algorytmy wielomianowe dla sprawiedliwego kolorowania grafów suboptymalną liczba kolorów.

Year 2011
  • The complexity of node blocking for dags

    Rozważamy następującą grę (pomiędzy dwoma graczami) kombinatoryczną o nazwie ''node blocking''. Dany jest graf skierowany. Każdy wierzchołek może być zajęty przez co najwyżej jeden token. Wyróżniamy dwa kolory tokenów, biały i czarny, każdy gracz może przemieszczać tylko własne tokeny. Gracze wykonują ruchy naprzemiennie. Ruch polega na wyborze dowolnego tokena własnego koloru i przesunięciu go na dowolnego niezajętego przez inny...

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  • The hat problem on a union of disjoint graphs
    Publication

    The topic is the hat problem in which each of n players is randomly fitted with a blue or red hat. Then everybody can try to guess simultaneously his own hat color by looking at the hat colors of the other players. The team wins if at least one player guesses his hat color correctly, and no one guesses his hat color wrong; otherwise the team loses. The aim is to maximize the probability of winning. In this version every player...

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  • The hat problem on cycles on at least nine vertices
    Publication

    The topic is the hat problem in which each of n players is randomly fitted with a blue or red hat. Then everybody can try to guess simultaneously his own hat color by looking at the hat colors of the other players. The team wins if at least one player guesses his hat color correctly, and no one guesses his hat color wrong; otherwise the team loses. The aim is to maximize the probability of winning. In this version every player...

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Year 2009
  • The complexity of the L(p,q)-labeling problem for bipartite planar graphs of small degree

    W pracy pokazano, że problem L(p,q)-kolorowania przy użyciu ''t'' kolorów jest NP-zupełny nawet w wersji ograniczonej do grafów planarnych dwudzielnych małego stopnia, nawet dla stosunkowo niewielkich wartości ''t''. Jako wniosek z uzyskanych wyników stwierdzono, że problem L(2,1)-kolorowania grafów planarnych przy użyciu 4 kolorów jest NP-zupełny, a także że problem L(p,q)-kolorowania grafów o maksymalnym stopniu 4 jest NP-zupełny...

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  • Turbine stage design aided by artificial intelligence methods

    Zaproponowano ogólny, wydajny system wspomagania projektowania palisad , stopni i grupy stopni turbinowych. Zastosowane algorytmy wykorzystują algorytmy genetyczne, sieci neuronowe i obliczenia równoległe. Uzyskane rozwiązania projektowe są wysoko zoptymalizowane pod względem sprawności, a czas ich uzyskania jest o kilka rzędów wielkości mniejszy, niż przy zastosowaniu obliczeń CFD.

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  • Universal Augmentation Schemes for Network Navigability
    Publication
    • P. Fraigniaud
    • C. Gavoille
    • A. Kosowski
    • E. Lebhar
    • Z. Lotker

    - THEORETICAL COMPUTER SCIENCE - Year 2009

    Rozważano problem uzupełniania grafu (reprezentującego np. sieci społeczne) poprzez dodanie w każdym węźle jednego dodatkowego skierowanego połączenia (długodystansowego). Dokładniej, dla każdego węzła definiuje się listę prawdopodobieństw istnienia połączenia wychodzącego z danego węzła do wszystkich pozostałych węzłów; wartości tych prawdopodobieństw muszą sumować się do jedności. Routing zachłanny w takiej sieci polega na przekazywaniu...

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Year 2003
Year 2012
  • The Potential of Greed for Independence
    Publication

    - JOURNAL OF GRAPH THEORY - Year 2012

    The well-known lower bound on the independence number of a graph due to Caro and Wei can be established as a performance guarantee of two natural and simple greedy algorithms or of a simple randomized algorithm. We study possible generalizations and improvements of these approaches using vertex weights and discuss conditions on so-called potential functions p(G) : V(G) -> N_0 defined on the vertex set of a graph G for which suitably...

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  • TreeCmp: Comparison of Trees in Polynomial Time

    Metryki filogenetyczne umożliwiają ocenę jakości wyników analizy filogenetycznej oraz wiarygodności algorytmów przeprowadzających taką analizę. Aplikacja TreeCmp oferuje efektywne, wielomianowe implementacje ośmiu takich metryk (dla drzew nieukorzenionych i zawierających korzeń) zdefiniowanych dla dowolnych filogenez (nie koniecznie binarnych). Program ten jako pierwszy umożliwia wyznaczanie nowych metryk, definiowanych w oparciu...

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Year 2017
  • The Snow Team Problem
    Publication

    - Year 2017

    We study several problems of clearing subgraphs by mobile agents in digraphs. The agents can move only along directed walks of a digraph and, depending on the variant, their initial positions may be pre-specified. In general, for a given subset~$\cS$ of vertices of a digraph $D$ and a positive integer $k$, the objective is to determine whether there is a subgraph $H=(\cV_H,\cA_H)$ of $D$ such that (a) $\cS \subseteq \cV_H$, (b)...

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Year 2013
  • Three-fast-searchable graphs
    Publication

    - DISCRETE APPLIED MATHEMATICS - Year 2013

    In the edge searching problem, searchers move from vertex to vertex in a graph to capture an invisible, fast intruder that may occupy either vertices or edges. Fast searching is a monotonic internal model in which, at every move, a new edge of the graph G must be guaranteed to be free of the intruder. That is, once all searchers are placed the graph G is cleared in exactly |E(G)| moves. Such a restriction obviously necessitates...

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  • Trees having many minimal dominating sets

    We provide an algorithm for listing all minimal dominating sets of a tree of order n in time O(1.4656^n). This leads to that every tree has at most 1.4656^n minimal dominating sets. We also give an infinite family of trees of odd and even order for which the number of minimal dominating sets exceeds 1.4167^n, thus exceeding 2^{n/2}. This establishes a lower bound on the running time of an algorithm for listing all minimal dominating...

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Year 2020
  • Tight bounds on global edge and complete alliances in trees

    In the talk the authors present some tight upper bounds on global edge alliance number and global complete alliance number of trees. Moreover, we present our NP-completeness results from [8] for global edge alliances and global complete alliances on subcubic bipartite graphs without pendant vertices. We discuss also polynomial time exact algorithms for finding the minimum global edge alliance on trees [7] and complete alliance...

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  • Visual TreeCmp : Comprehensive Comparison of Phylogenetic Trees on the Web
    Publication

    - Methods in Ecology and Evolution - Year 2020

    1. We present Visual TreeCmp—a package of applications for comparing phylogenetic tree sets. 2. Visual TreeCmp includes a graphical web interface allowing the visualization of compared trees and command line application extended by comparison methods recently proposed in the literature. 3. The phylogenetic tree similarity analysis in Visual TreeCmp can be performed using eighteen metrics, of which 11 are dedicated to rooted trees...

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Year 2018
  • Tight bounds on the complexity of semi-equitable coloring of cubic and subcubic graphs
    Publication

    - DISCRETE APPLIED MATHEMATICS - Year 2018

    We consider the complexity of semi-equitable k-coloring, k>3, of the vertices of a cubic or subcubic graph G. In particular, we show that, given a n-vertex subcubic graph G, it is NP-complete to obtain a semi-equitable k-coloring of G whose non-equitable color class is of size s if s>n/3, and it is polynomially solvable if s, n/3.

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  • Trade-offs in multiparty Bell-inequality violations in qubit networks
    Publication

    - PHYSICAL REVIEW A - Year 2018

    Two overlapping bipartite binary input Bell inequalities cannot be simultaneously violated as this would contradict the usual no-signalling principle. This property is known as monogamy of Bell inequality violations and generally Bell monogamy relations refer to trade-offs between simultaneous violations of multiple inequalities. It turns out that multipartite Bell inequalities admit weaker forms of monogamies that allow for violations...

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  • Turán numbers for odd wheels
    Publication

    - DISCRETE MATHEMATICS - Year 2018

    The Turán number ex(n,G) is the maximum number of edges in any n-vertex graph that does not contain a subgraph isomorphic to G. A wheel W_n is a graph on n vertices obtained from a C_{n−1} by adding one vertex w and making w adjacent to all vertices of the C_{n−1}. We obtain two exact values for small wheels: ex(n,W_5)=\lfloor n^2/4+n/2\rfloor, ex(n,W_7)=\lfloor n^2/4+n/2+1 \rfloor. Given that ex(n,W_6) is already known, this...

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Year 2016
  • Topology recognition and leader election in colored networks
    Publication

    Topology recognition and leader election are fundamental tasks in distributed computing in networks. The first of them requires each node to find a labeled isomorphic copy of the network, while the result of the second one consists in a single node adopting the label 1 (leader), with all other nodes adopting the label 0 and learning a path to the leader. We consider both these problems in networks whose nodes are equipped with...

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Year 2002