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Wyniki wyszukiwania dla: MULTISCALE
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Journal of Multiscale Modeling
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YADE - An extensible framework for the interactive simulation of multiscale, multiphase, and multiphysics particulate systems
PublikacjaThis contribution presents the key elements of YADE, an extensible open-source framework for dynamic simulations. During the past 19 years, YADE has evolved from "Yet Another Dynamic Engine"' to a versatile multiscale and multiphysics solver, counting a large, active, and growing community of users and developers. The computationally intense parts of the source code are written in C++, using flexible object models that allow for...
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Integrated multiscale 3d imaging geographic information system using acoustic data
PublikacjaW artykule zaprezentowano prototyp zintegrowanego systemu informacji geograficznej do trójwymiarowej wizualizacji danych uzyskanych metodami akustycznymi. System wykorzystuje dane pochodzące z systemów wielowiązkowych, sonarów bocznych oraz echosond jednowiązkowych. Otrzymane wyniki zostały zaprezentowane w postaci trójwymiarowych interaktywnych scen obszaru Zatoki Gdańskiej.
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Multiscale model for blood flow after a bileaflet artificial aortic valve implantation
PublikacjaCardiovascular diseases are the leading cause of mortality in the world, mainly due to atherosclerosis and its consequences. The article presents the numerical model of the blood flow through artificial aortic valve. The overset mesh approach was applied to simulate the valve leaflets motion and to realize the moving mesh, in the aortic arch and the main branches of cardiovascular system. To capture the cardiac system’s response...
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Validation of Interpolation Algorithms for Multiscale UV-VIS Imaging Using UAV Spectrometer
PublikacjaIn this study, we present a comparison of popular methods for the interpolation of irregular spatial data in order to determine the applicability of each algorithm for hyperspectral reflectance estimation. The algorithms were benchmarked against a very high-resolution orthoimage from an RGB camera and medium-resolution satellite imagery from Sentinel-2A. We tested five interpolation algorithms: Triangulated Irregular Network (TIN),...
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Free Energies of the Disassembly of Viral Capsids from a Multiscale Molecular Simulation Approach
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MULTISCALE MODELING & SIMULATION
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Efficient Multiscale Finite Difference Frequency Domain Analysis Using Multiple Macromodels with Compressed Boundaries
PublikacjaW niniejszym artykule zaprezentowany został nowatorski pomysł na zmniejszenie numerycznej złożoności metody różnic skończonych przy użyciu wielu makromodeli. Skuteczność techniki macromodelingu zależy od liczby portów modelu. Aby zwiększyć efektywność algorytmu, próbki pola na granicy makromodeli są zastępowane przez amplitudy wielomianów Legendre'a. Przedefiniowanie problemu w taki sposób powoduje znaczną redukcję czasu analizy....
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Synthesis, Chemical Characterization and Multiscale Biological Evaluation of a dimericcRGD Peptide for Targeted Imaging of αVβ3 Integrin Activity
PublikacjaCyclic peptides containing the Arg-Gly-Asp (RGD) sequence have been shown to specifically bind the angiogenesis biomarker α V β3 integrin. We report the synthesis, chemical characterization, and biological evaluation of two novel dimeric cyclic RGD-based molecular probes for the targeted imaging of α V β3 activity (a radiolabeled version, 64Cu-NOTA-PEG4-cRGD2, for PET imaging, and a fluorescent version, FITC-PEG4-cRGD2, for in...
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Journal of Coupled Systems and Multiscale Dynamics
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IEEE Journal on Multiscale and Multiphysics Computational Techniques
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A Hierarchical Multiscale Approach to Protein Structure Prediction: Production of Low‐Resolution Packing Arrangements of Helices and Refinement of the Best Models with a United‐Residue Force Field
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Multiscale Methods Summer School 2023
Kursy OnlineSummer school on Multiscale Methods at Gdańsk University of Technology. 3. - 7. July: 10 hours online10. - 14. July: 10 hours online17. - 21. July: 10 hours online24. - 28. July: 30 hours online or in Gdańsk (you choose) Participation is for free! More info and registration: https://ftims.pg.edu.pl/en/science-app/summer-schools-2023/multi-scale-methods-summer-school
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International Journal for Multiscale Computational Engineering
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Multiscale and Multidisciplinary Modeling, Experiments and Design
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Optimal Distribution of the Nonoverlapping Conducting Disks
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Conductivity of Fibre Composites with Fractures on the Boundary of Inclusions
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Multiscaled Hybrid Features Generation for AdaBoost Object Detection
PublikacjaThis work presents the multiscaled version of modified census features in graphical objects detection with AdaBoost cascade training algorithm. Several experiments with face detector training process demonstrate better performance of such features over ordinal census and Haar-like approaches. The possibilities to join multiscaled census and Haar features in single hybrid cascade of strong classifiers are also elaborated and tested....
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MHD Casson flow across a stretched surface in a porous material: a numerical study
PublikacjaIn this study, we examine the nature of magnetohydrodynamic (MHD) Casson flow of fluid across a stretched surface in a porous material. It studies how the behaviour of Casson fluids is affected by a number of variables, including thermal radiation, chemical processes, Joule heating, and viscosity dissipation. The Keller box strategy, based on the finite difference method (FDM), is used to tackle the complex numerical problem. Graphical...
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ON DYNAMICS OF ELASTIC NETWORKS WITH RIGID JUNCTIONS WITHIN NONLINEAR MICRO-POLAR ELASTICITY
PublikacjaWithin the nonlinear micropolar elasticity we discuss effective dynamic (kinetic) properties of elastic networks with rigid joints. The model of a hyperelastic micropolar continuum is based on two constitutive relations, i.e., static and kinetic ones. They introduce a strain energy density and a kinetic energy density, respectively. Here we consider a three-dimensional elastic network made of three families of elastic fibers connected...
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Adolfo Poma
OsobyDr. Adolfo Poma (see my biosketch) is the group leader of the Multiscale Modelling of Complex Systems divison. In 2008, he got a MSc. degree in computational physics from the State University of Campinas (Brazil). Then he moved to Germany and under the supervision of Prof. Kurt Kremer (head of the polymer theory group, Max Planck Institute for Polymer Research) and Prof. Luigi Delle Site (Frei University of Berlin) got a PhD degree...
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Diagnostyka i identyfikacja procesu przy użyciu AdMS-PCA
PublikacjaArtykuł dotyczy diagnostyki i identyfikacji procesu przy użyciu adaptacyjnego, wieloskalowego rozszerzenia PCA - Adaptive Multiscale Principal Component Analysis (AdMS-PCA). Przeprowadzona została analiza własności AdMS-PCA istotnych dla diagnostyki i identyfikacji. Zauważono wadę części adaptacyjnej metody, która ogranicza jej praktyczne zastosowanie. Zaproponowano modyfikację poprzez wprowadzenie algorytmu nadzorującego adaptację....
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Enhanced energy conversion as a result of fluid-solid interaction in micro- and nanoscale
PublikacjaIt is known that nano- and micromechanics require new approaches to right describing of surface-like phenomena which lead to an enhanced energy conversion. In this work, a general form of surface forces that consist of a contribution from both the friction and mobility components has been extended to collect the effects of bulk and surface motion of a fluid. Quite similar impact can be observed for a solid-fluid mixture, where...
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The generalization by simplification operator with Sester’s method of objects representing groups of buildings in Gdańsk district - scale 1:10000. Data from OSM
Dane BadawczeThe process of automatic generalization is one of the elements of spatial data preparation for the purpose of creating digital cartographic studies. The presented data include a part of the process of generalization of building groups obtained from the Open Street Map databases (OSM) [1].
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The generalization by simplification operator with Sester’s method of objects representing groups of buildings in Kartuzy district - scale 1:10000. Data from OSM
Dane BadawczeThe process of automatic generalization is one of the elements of spatial data preparation for the purpose of creating digital cartographic studies. The presented data include a part of the process of generalization of building groups obtained from the Open Street Map databases (OSM) [1].
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A New Type of Macro-Elements for Efficient Two-Dimensional FEM Analysis
PublikacjaThis letter deals with a model order reduction technique applicable for driven and eigenvalue problems solved using the finite element method (FEM). It allows one to efficiently compute electromagnetic parameters of structures comprising small features that require strong local mesh refinement. The subdomains of very fine mesh are separated from the global domain as so called macro-elements that undergo model reduction. The macro-elements...
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Anomalous Behavior of Hyaluronan Crosslinking Due to the Presence of Excess Phospholipids in the Articular Cartilage System of Osteoarthritis
PublikacjaLubrication of articular cartilage is a complex multiscale phenomenon in synovial joint organ systems. In these systems, synovial fluid properties result from synergistic interactions between a variety of molecular constituent. Two molecular classes in particular are of importance in understanding lubrication mechanisms: hyaluronic acid and phospholipids. The purpose of this study is to evaluate interactions between hyaluronic acid...
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Principles of target DNA cleavage and the role of Mg2+ in the catalysis of CRISPR–Cas9
PublikacjaAt the core of the CRISPR–Cas9 genome-editing technology, the endonuclease Cas9 introduces site-specific breaks in DNA. However, precise mechanistic information to ameliorate Cas9 function is still missing. Here, multimicrosecond molecular dynamics, free energy and multiscale simulations are combined with solution NMR and DNA cleavage experiments to resolve the catalytic mechanism of target DNA cleavage. We show that the conformation...
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The generalization by simplification operator with Sester’s method of objects representing groups of buildings in Kartuzy district - scale 1:10000
Dane BadawczeThe process of automatic generalization is one of the elements of spatial data preparation for the purpose of creating digital cartographic studies. The presented data include a part of the process of generalization of building groups obtained from the national geodesy and cartography resource from BDOT10k (10k topographic database) [1].
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The generalization by simplification operator with Sester’s method of objects representing groups of buildings in Gdańsk district - scale 1:10000
Dane BadawczeThe process of automatic generalization is one of the elements of spatial data preparation for the purpose of creating digital cartographic studies. The presented data include a part of the process of generalization of building groups obtained from the national geodesy and cartography resource from BDOT10k (10k topographic database) [1].
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The generalization by simplification operator with Sester’s method of objects representing groups of buildings in Kartuzy district - scale 1:25000
Dane BadawczeThe process of automatic generalization is one of the elements of spatial data preparation for the purpose of creating digital cartographic studies. The presented data include a part of the process of generalization of building groups obtained from the national geodesy and cartography resource from BDOT10k (10k topographic database) [1].
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Dominant Pathways of Adenosyl Radical-Induced DNA Damage Revealed by QM/MM Metadynamics
PublikacjaBrominated nucleobases sensitize double stranded DNA to hydrated electrons, one of the dominant genotoxic species produced in hypoxic cancer cells during radiotherapy. Such radiosensitizers can therefore be administered locally to enhance treatment efficiency within the solid tumor while protecting the neighboring tissue. When a solvated electron attaches to 8-bromoadenosine, a potential sensitizer, the dissociation of bromide...
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Electrochemistry from first-principles in the grand canonical ensemble
PublikacjaProgress in electrochemical technologies, such as automotive batteries, supercapacitors, and fuel cells, depends greatly on developing improved charged interfaces between electrodes and electrolytes. The rational development of such interfaces can benefit from the atomistic understanding of the materials involved by first-principles quantum mechanical simulations with Density Functional Theory (DFT). However, such simulations are...
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Engineering boron and nitrogen codoped carbon nanoarchitectures to tailor molecularly imprinted polymers for PFOS determination
PublikacjaPer- and polyfluoroalkyl substances (PFAS) have gained significant attention as emerging contaminants due to their persistence, abundance, and adverse health effects. Consequently, the urgent need for ubiquitous and effective sensors capable of detecting and quantifying PFAS in complex environmental samples has become a priority. In this study, we present the development of an ultrasensitive molecularly imprinted polymer (MIP)...
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Combined Single Neuron Unit Activity and Local Field Potential Oscillations in a Human Visual Recognition Memory Task
PublikacjaGOAL: Activities of neuronal networks range from action potential firing of individual neurons, coordinated oscillations of local neuronal assemblies, and distributed neural populations. Here, we describe recordings using hybrid electrodes, containing both micro- and clinical macroelectrodes, to simultaneously sample both large-scale network oscillations and single neuron spiking activity in the medial temporal lobe structures...
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An insight into the mixed quantum mechanical-molecular dynamics simulation of a ZnII-Curcumin complex with a chosen DNA sequence that supports experimental DNA binding investigations
PublikacjaAn important aspect of research pertaining to Curcumin (HCur) is the need to arrest its degradation in aqueous solution and in biological milieu. This may be achieved through complex formation with metal ions. For this reason, a complex of HCur was prepared with ZnII, that is not likely to be active in redox pathways, minimizing further complications. The complex is monomeric, tetrahedral, with one HCur, an acetate and a molecule...
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Raman Scattering versus Strain Engineering in Phosphorene Nanostructures: An Ab Initio Studies
PublikacjaThe one-dimensional nanoribbons made from phosphorene are novel structures with great applicability potential in material science. The significant carrier mobility combined with intrinsic semiconductor properties makes them ideal for application in electronics, and they are excellent candidates for sensing material. The lack of a well–established multiscale modelling strategy for phosphorene nano optoelectronic devices is one of...
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Physics-Based Coarse-Grained Modeling in Bio- and Nanochemistry
PublikacjaCoarse-grained approaches, in which groups of atoms are represented by single interaction sites, are very important in biological and materials sciences because they enable us to cover the size- and time-scales by several orders of magnitude larger than those available all-atom simulations, while largely keeping the details of the systems studied. The coarse-grained approaches differ by the scheme of reduction and by the origin...
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Mechanics of Micro- and Nano-Size Materials and Structures
PublikacjaNanotechnology knowledge is always looking to expand its boundaries to achieve the mostsignificant benefit to human life and meet the growing needs of today. In this case, we can refer tomicro- and nanosensors in micro/nano-electromechanical systems (MEMS/NEMS). These electricaldevices can detect minimal physical stimuli up to one nanometer in size. Today, micro/nano-sensordevices are widely used in the...
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A concept of zero-dimensional and three-dimensional thermodynamic modelling of steam storage in a steam cycle
PublikacjaThis work presents the thermodynamic model of steam storage in a steam cycle. The innovative steam storage is an integral part of the unit and thus responds quickly to changes in load. This enhances the primary control reserve while maintaining high efficiency of energy conversion. With regard to power plants, it improves the operational safety of generation units, as it prevents boiler and turbines overload in the case of steep...