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Search results for: LEWARY
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Multi-GPU-powered UNRES package for physics-based coarse-grained simulations of structure, dynamics, and thermodynamics of protein systems at biological size- and timescales
PublicationCoarse-grained models are nowadays extensively used in biomolecular simulations owing to the tremendous extension of size- and time-scale of simulations. The physics-based UNRES (UNited RESidue) model of proteins developed in our laboratory has only two interaction sites per amino-acid residue (united peptide groups and united side chains) and implicit solvent. However, owing to rigorous physics-based derivation, which enabled...
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Bitumen-Based Poroelastic Pavements: Successful Improvements and Remaining Issues
PublicationThis article presents the development process of designing and testing poroelastic pavement based on highly polymer-modified bitumen. Poroelastic wearing course was composed of mineral and rubber aggregate mixed with highly polymer-modified bitumen, in contrast to previous trials, during which polyurethane resins were mainly used as binder, which led to several serious technological problems concerning difficult production, insufficient...
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Deltorphin analogs restricted via a urea bridge: structure and opioid activity
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Intrinsic effects of AM4113, a putative neutral CB1 receptor selective antagonist, on open-field behaviors in rats
PublicationW pracy przedstawiono wyniki testów otartego pola na zachowanie szczurów po iniekcji zwierzętom WIN55,21-2 (WIN; 3 mg/kg) agonisty receptora kanabinoidowego CB1R, bądź AM4113 (0.3−5.6 mg/kg) przypuszczalnie neutralnego antagonisty receptora kanabinoidowego CB1R oraz mieszaniny obu związków. W badaniach pod uwagę brano następujące zachowania zwierząt; ilość kwadratów, którą szczury przechodziły na czterech nogach, częstotliwość...
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A special issue on Biophotonics in Europe
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Wavelet transform analysis reveals differences between patients with impaired LVEF and healthy individuals
PublicationHeart failure (HF) is a global pandemic. It af- fects 64 million people worldwide, with stead- ily increasing incidence, morbidity, mortality, and economic burden [1]. Forecasts indicate continued rising prevalence, especially among the elderly and in low-to-middle socio-de- mographic index regions [2]. Left ventricular ejection fraction (LVEF) significantly impacts HF treatment and prognosis [3]. The sequence of physiological...
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Numerical Issues and Approximated Models for the Diagnosis of Transmission Pipelines
PublicationThe chapter concerns numerical issues encountered when the pipeline flow process is modeled as a discrete-time state-space model. In particular, issues related to computational complexity and computability are discussed, i.e., simulation feasibility which is connected to the notions of singularity and stability of the model. These properties are critical if a diagnostic system is based on a discrete mathematical model of the flow...
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Water Needs of the Ash-Leaved Maple (Acer negundo L.) at the Period Over Three Years after Reclamation in Different Regions of Poland
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Protective and risk factors of cognitive decline and dementia with a special emphasis on social health: A systematic mapping review
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Installation of GNSS receivers on a mobile railway platform – methodology and measurement aspects
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Use of a Least Squares with Conditional Equations Method in Positioning a Tramway Track in the Gdansk Agglomeration
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Analysis of positioning methods using Global Navigation Satellite Systems (GNSS) in Polish State Railways (PKP)
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Analysis of Transformation Methods of Hydroacoustic and Optoelectronic Data Based on the Tombolo Measurement Campaign in Sopot
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A Maximum-Likelihood Approach to Force-Field Calibration
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First recurrent large genomic rearrangement in the BRCA1 gene found in Poland
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Steroidogenesis in the skin: Implications for local immune functions
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The Accuracy of a Marine Satellite Compass under Terrestrial Urban Conditions
PublicationWhen used at sea, satellite compasses are capable of determining the course of a sailing vessel with high accuracy. It is dicult to verify the accuracy declared by the device manufacturer under such conditions, as it is dicult to define a reliable reference. This study analyses the accuracy of the satellite compass in an urban setting, with the satellite signal being obscured to various extents. It is an important point in the...
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Solution conformational study of Scyliorhinin I analogues with conformational constraints by two-dimensional NMR and theoretical conformational analysis
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Biodegradable macromolecular conjugates of citropin: Synthesis, characterization and in vitro efficiency study
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The accuracy of a marine satellite compass under terrestrial urban conditions
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Optimization of parallel implementation of UNRES package for coarse‐grained simulations to treat large proteins
PublicationWe report major algorithmic improvements of the UNRES package for physics-based coarse-grained simulations of proteins. These include (i) introduction of interaction lists to optimize computations, (ii) transforming the inertia matrix to a pentadiagonal form to reduce computing and memory requirements, (iii) removing explicit angles and dihedral angles from energy expressions and recoding the most time-consuming energy/force terms...
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Time Resolution and Dynamic Range of Field-Effect Transistor–Based Terahertz Detectors
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Human subarachnoid space width oscillations in the resting state
PublicationAbnormal cerebrospinal fluid (CSF) pulsatility has been implicated in patients suffering from various diseases, including multiple sclerosis and hypertension. CSF pulsatility results in subarachnoid space (SAS) width changes, which can be measured with near-infrared transillumination backscattering sounding (NIR-T/BSS). The aim of this study was to combine NIR-T/BSS and wavelet analysis methods to characterise the dynamics of the...
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Use of the UNRES force field in template-assisted prediction of protein structures and the refinement of server models: Test with CASP12 targets
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Correction of determined coordinates of railway tracks in mobile satellite measurements
PublicationThis article examines one of the basic issues related to the technique of mobile satellite measurements in railway tracks. This problem concerns the correction of the determined coordinates of the track centerline. The need to perform this operation results from the GNSS receivers positioning at a certain height above the level of the existing track axis, leading to longitudinal and lateral shifts of antennas. The key problem here...
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Projekt badawczy BRIK: Opracowanie innowacyjnej metody wyznaczania precyzyjnej trajektorii pojazdu szynowego
PublicationW artykule przedstawiono podstawowe informacje dotyczące projektu badawczego realizowanego na zlecenie Narodowego Centrum Badań i Rozwoju oraz Spółki PKP Polskie Linie Kolejowe S. A. przez Konsorcjum Politechniki Gdańskiej i Uniwersytetu Morskiego w Gdyni. Projekt obejmuje wykorzystanie nowoczesnych metod pomiarowych, takich jak techniki pozycjonowania satelitarnego GNSS, pomiary inercyjne INS oraz skaning laserowy LS, w procesie...
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Research project BRIK: development of an innovative method for determining the precise trajectory of a railway vehicle
PublicationIn the paper the essential assumptions regarding a research project implemented by a consortium of Gdansk University of Technology and Gdynia Maritime University are presented. The project has been commissioned by National Center of Research and Development with cooperation with Polish Railways (PKP Polskie Linie Kolejowe S.A.). The project is focused in implementation of modern measurement techniques using Global Navigation Positioning...
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Processing and Maturation of Cathepsin C Zymogen: A Biochemical and Molecular Modeling Analysis
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Projekt badawczy BRIK: Opracowanie innowacyjnej metody wyznaczania precyzyjnej trajektorii pojazdu szynowego
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Correction of determined coordinates of railway tracks in mobile satellite measurements
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Wstępne wyniki projektu GDArms - odtwarzanie środowiska rakiety kosmicznej
PublicationW trakcie wynoszenia na ładunek rakiety działają przyspieszenia, drgania, przepływ ciepła oraz zmiany ciśnienia atmosferycznego. Według aktualnych norm i standardów, przed lotem testy środowiskowe są wykonywane sekwencyjnie. Autorzy przedstawili projekt urządzenia do odtwarzania środowiska rakiety kosmicznej. Urządzenie zostało zbudowane na bazie gotowego wzbudnika elektrodynamicznego. Zaprojektowano układy sterowania układów:...
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New concept of permafrost degradation monitoring based on photonics technologies: Case study from Calypsostranda (Bellsund, Svalbard)
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Unraveling the Protective Effects of Cognitive Reserve on Cognition and Brain: A Cross-Sectional Study
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Scale-consistent approach to the derivation of coarse-grained force fields for simulating structure, dynamics, and thermodynamics of biopolymers
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Cancer Familial Aggregation (CFA) and G446A polymorphism in ARLTS1 gene
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Innovative mobile method to determine railway track axis position in global coordinate system using position measurements performed with GNSS and fixed base of the measuring vehicle
PublicationThe shape of the railway track axis and its position in the global coordinate system are essential when defining design parameters of the railway. Correct reconstruction of these quantities is vital for both verifying the compliance of real track parameters with the design and for diagnosing, as all track deformations can also be defined as deviations of real parameters from their design values. The measurements of quantities related...
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Determination of the tram track axis using a multi receiver GNSS measurement system
PublicationThis article refers to research, that has been conducted by an interdisciplinary research team from the Gdańsk University of Technology and the Maritime University in Gdynia since 2009. These investigation concerns the determination of a railway track axis using the mobile satellite measurement technique. Following the dynamic development of GNSS techniques, that could be seen in the last decade, the team carried out further experiments...
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Verification of GNSS Measurements of the Railway Track Using Standard Techniques for Determining Coordinates
PublicationThe problem of the reproduction of the railway geometric layout in the global spatial system is currently solved in the form of measurements that use geodetic railway networks and also, in recent years, efficient methods of mobile positioning (mainly satellite and inert). The team of authors from the Gdańsk University of Technology and the Maritime University in Gdynia as part of the research project InnoSatTrack is looking for...
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Evaluation of the Possibility of Identifying a Complex Polygonal Tram Track Layout Using Multiple Satellite Measurements
PublicationWe present the main assumptions about the algorithmization of the analysis of measurement data recorded in mobile satellite measurements. The research team from the Gda´nsk University of Technology and the Maritime University in Gdynia, as part of a research project conducted in cooperation with PKP PLK (Polish Railway Infrastructure Manager), developed algorithms supporting the identification and assessment of track axis layout....
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Wyznaczanie osi torów tramwajowych z wykorzystaniem satelitarnego wieloantenowego systemu pomiarowego
PublicationNiniejszy artykuł nawiązuje do badań, które od 2009 roku prowadzi interdyscyplinarny zespół naukowy z Politechniki Gdańskiej i Uniwersytetu Morskiego w Gdyni. Badania te dotyczą problemu wyznaczania osi toru kolejowego z wykorzystaniem techniki mobilnych pomiarów satelitarnych. Podążając za dynamicznym rozwojem technik GNSS, który można było obserwować w czasie ostatniej dekady, zespół przeprowadzał kolejne doświadczenia nakierowane...
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Determining horizontal curvature of railway track axis in mobile satellite measurements
PublicationThe article discusses the applicability of a novel method to determine horizontal curvature of the railway track axis based on results of mobile satellite measurements. The method is based on inclination angle changes of a moving chord in the Cartesian coordinate system. In the presented case, the variant referred to as the method of two virtual chords is applied which consists in manoeuvring with only one GNSS (Global Navigation...
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Digital Filtering of Railway Track Coordinates in Mobile Multi–Receiver GNSS Measurements
PublicationThe article discusses an important issue in connection with the technique of mobile Global Navigation Satellite System (GNSS) measurements of railway track coordinates, which is digital filtering performed to precisely determine railway track axes. For this purpose, a measuring technique is proposed which bases on the use of a measuring platform with a number of appropriately distributed GNSS receivers, where two of them determine...
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Sport-related concussion alters cerebral hemodynamic activity during controlled respiration
PublicationThis study investigated cerebral hemodynamic activity following sport-related concussion. Prefrontal cortex oxygenation was assessed by near-infrared spectroscopy (NIRS) during a controlled breathing protocol. Wavelet transformation of the NIRS signals showed significant decreases in HbO2 and HbD amplitude at the respiratory frequency interval (0.10–0.6 HZ) from preseason baseline to acute concussion. These results suggest a decreased...
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Determining horizontal curvature of railway track axis in mobile satellite measurements
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Wyznaczanie osi torów tramwajowych z wykorzystaniem satelitarnego wieloantenowego systemu pomiarowego
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Verification of GNSS measurements of the railway track using standard techniques for determining coordinates
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Digital filtering of railway track coordinates in mobile multi-receiver GNSS measurements
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Innovative mobile method to determine railway track axis position in global coordinate system using position measurements performed with GNSS and fixed base of the measuring vehicle
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Testing the positioning accuracy of GNSS solutions during the tramway track mobile satellite measurements in diverse urban signal reception conditions
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Evaluation of the possibility of identifying a complex polygonal tram track layout using multiple satellite measurements
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