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Search results for: TRANSCRIPTIONAL PROFILING
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The role of epigenetics in regeneration
PublicationComplex changes in chromatin structure and at the transcriptional level occur from the creation of a single parental gamete throughout fertilization, embryo development and the life of an adult organism. Epigenetic changes, such as methylation and hydroxymethylation of DNA or histone methylation and acetylation, are an important part of these processes. Epigenetic regulation has an essential influence on gene expression level. DNA...
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Could spray-dried microbeads with chitosan glutamate be considered as promising vaginal microbicide carriers? The effect of process variables on the in vitro functional and physicochemical characteristics
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Checkpoints that regulate balanced biosynthesis of lipopolysaccharide and its essentiality in Escherichia coli
PublicationThe outer membrane (OM) of Gram-negative bacteria, such as Escherichia coli, is essential for their viability. Lipopolysaccharide (LPS) constitutes the major component of OM, providing the permeability barrier, and a tight balance exists between LPS and phospholipids amounts as both of these essential components use a common metabolic precursor. Hence, checkpoints are in place, right from the regulation of the first committed step...
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Promising effects of xanthine oxidase inhibition by allopurinol on autonomic heart regulation estimated by heart rate variability (HRV) analysis in rats exposed to hypoxia and hyperoxia
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2 Latin letters by Georg Pauli (b.1586-d.1650) - transcription, translation and photographs
Open Research DataThe data set contains two Latin letters by Georg Pauli (b. 1586 – d. 1650) to his brother Adrian (d. 1622) in photographs, transcriptions, and translations into Polish and English. The first letter was sent by Georg from Gdańsk (formerly Danzig) in 1604 when he was still a student at the local Academic Gymnasium. The second one, in turn, was written...
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Porównanie wyników datowania metodami luminescencji (TL i OSL) próbek z wybranych profili lessowych Polski SE i Ukrainy NW
PublicationPrzeprowadzono datowanie dla wybranych pięciu profili lessowych, trzy pochodziły z Polski a dwa z Ukrainy. Datowaniu podlegało 89 próbek, przeprowadzono je metodami TL i OSL. W pracy zostały przedstawione statystyczne relacje między wspomnianymi metodami oraz między profilami glebowymi występującymi w danych okresach geologicznych.
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Recent advances in transcription regulation
e-Learning CoursesRecent advances in transcription regulation
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Opinia o innowacyjności w odniesieniu do planowanego efektu prac badawczo – rozwojowych nad nowymi rodzajami profili ciężkich wraz z akcesoriami komplementarnymi
PublicationOpinia o innowacyjności w odniesieniu do planowanego efektu prac badawczo – rozwojowych nad nowymi rodzajami profili ciężkich wraz z akcesoriami komplementarnymi. Opinia związana z wystąpieniem o środki na dofinansowanie innowacyjnej technologii produkcji. Mocowania, pomosty, belki, konstrukcje skręcane.
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Anticancer Imidazoacridinone C-1311 is Effective in Androgen-Dependent and Androgen-Independent Prostate Cancer Cells
PublicationAndrogen receptor (AR) plays a crutial role in prostate cancer (PCa) development and metastasis. Here, we reported potent anti-PCa activity of a small molecule imidazoacridinone C-1311. In AR-positive PCa cells, C-1311 was found to inhibit the transcriptional activity of AR uncovering a novel mechanism that may be relevant for its anticancer effect. Mechanistically, C-1311 decreased AR binding to prostate-specific antigen (PSA)...
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Regulacja epigenetyczna a potencjał regeneracyjny ssaków. Badania globalnych profili metylacji w tkankach dorosłej myszy MRL/MpJ i w sercach noworodków myszy C57BL/6J.
PublicationW pracy tej otrzymano genomowe profile metylacji DNA dla dwóch modeli regeneracji u ssaków: (i) dorosłej myszy MRL/MpJ, która jest zdolna do zamykania otworów w małżowinie usznej oraz wykazuje podwyższone zdolności regeneracyjne w wielu innych narządach oraz (ii) sercach noworodków myszy, u których zachodzi regeneracja rozległych uszkodzeń lewej komory serca. Zidentyfikowano szereg odmiennie metylowanych regionów DNA, regionów DMR,...
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Modelling gene expression of a self-regulating protein
PublicationWe analyze a model of gene transcription and protein synthesis. We take into account the number of sites on the protein’s promoter at which the protein’s dimers can bind blocking transcription of protein mRNA.
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IFI16 Impacts Metabolic Reprogramming during Human Cytomegalovirus Infection
PublicationCellular lipid metabolism plays a pivotal role in human cytomegalovirus (HCMV) infection, as increased lipogenesis in HCMV-infected cells favors the envelopment of newly synthesized viral particles. As all cells are equipped with restriction factors (RFs) able to exert a protective effect against invading pathogens, we asked whether a similar defense mechanism would also be in place to preserve the metabolic compartment from HCMV...
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Development of a Peptide Derived from Platelet-Derived Growth Factor (PDGF-BB) into a Potential Drug Candidate for the Treatment of Wounds
PublicationObjective: This study evaluated the use of novel peptides derived from platelet-derived growth factor (PDGF-BB) as potential wound healing stimulants. One of the compounds (named PDGF2) was subjected for further research after cytotoxicity and proliferation assays on human skin cells. Further investigation included evaluation of: migration and chemotaxis of skin cells, immunological and allergic safety, the transcriptional analyses...
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Optimizing Medical Personnel Speech Recognition Models Using Speech Synthesis and Reinforcement Learning
PublicationText-to-Speech synthesis (TTS) can be used to generate training data for building Automatic Speech Recognition models (ASR). Access to medical speech data is because it is sensitive data that is difficult to obtain for privacy reasons; TTS can help expand the data set. Speech can be synthesized by mimicking different accents, dialects, and speaking styles that may occur in a medical language. Reinforcement Learning (RL), in the...
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Sensory analysis of confectionery products.
Open Research DataThe data set presents the results of the sensory analysis of confectionery products, which was carried out by the sensory profiling analysis method based on the PN-ISO 11035: 1999 standard – “Sensory analysis - Identification and selection of descriptors for determining the sensory profile using multivariate methods”. The method was used to evaluate...
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Hopf bifurcation in time‐delayed gene expression model with dimers
PublicationWe study a mathematical model of gene transcription and protein synthesis with negative feedback. We consider a system of equations taking into account the formation of dimers (i.e., complex formed by two protein monomers), the way in which dimers bind to DNA and time delay in translation process. For the model consisting of three ordinary differential equations with time delay, we derive conditions for stability of the positive...
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Igor Szpotakowski
PeoplePrincipal Investigator in the four-year project (2020-2024): “Services contracts in private law of the PRC - codification in the era of decodification” funded by the Polish Ministry of Science and Higher Education “Diamond Grant” programme, which is awarded to the most promising young researchers in Poland. Awarded a Ryoichi Sasakawa Young Leaders Fellowship to conduct one-year research (2020-2021) about “The effects of non-performance...
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Sensory analysis of bread samples with the addition of beetroot
Open Research DataThe data set presents the results of the sensory analysis of bread samples with the addition of beetroot, which was carried out by the sensory profiling analysis method based on the PN-ISO 11035: 1999 standard – “Sensory analysis - Identification and selection of descriptors for determining the sensory profile using multivariate methods”. The method...
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Small regulatory bacterial RNAs regulating the envelope stress response
PublicationMost bacteria encode a large repertoire of RNA-based regulatory mechanisms. Recent discoveries have revealed that the expression of many genes is controlled by a plethora of base-pairing noncoding small regulatory RNAs (sRNAs), regulatory RNA-binding proteins and RNA-degrading enzymes. Some of these RNA-based regulated processes respond to stress conditions and are involved in the maintenance of cellular homeostasis. They achieve...
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Structure and evolution of the 4-helix bundle domain of Zuotin, a J-domain protein co-chaperone of Hsp70
PublicationThe J-domain protein Zuotin is a multi-domain eukaryotic Hsp70 co-chaperone. Though it is primarily ribosome-associated, positioned at the exit of the 60S subunit tunnel where it promotes folding of nascent polypeptide chains, Zuotin also has off-ribosome functions. Domains of Zuotin needed for 60S association and interaction with Hsp70 are conserved in eukaryotes. However, whether the 4-helix bundle (4HB) domain is conserved remains...
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Jakub Montewka prof. dr hab. inż.
PeopleJakub Montewka is an associate professor at Gdańsk University of Technology in Poland and visiting processor at Aalto University in Espoo, Finland and Wuhan University of Technology in China. Jakub is researching in the field of maritime traffic risk and safety. His primary interests lie in the risk assessment of maritime transportation, quantification of safety of maritime navigation, route optimization for ships in ice-covered...
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The database of localization and expression of aquaporin 3 (AQP3), aquaporin 7 (AQP7) and aquaporin 9 (AQP9) in the male reproductive system in cattle. Morphometric studies. Localization of zinc finger transcription factor GATA-4.
Open Research DataThe data present research results being part of the OPUS-22 project entitled “In search of new markers of male fertility in cattle. Aquaporins expression in the reproductive organs and sperm of the bulls (Bos taurus)” obtained from the National Science Center in Poland (grant no. 2021/43/B/NZ9/00204). The aim of this part of the project was (i) to determine...
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Interaction of the conserved region 4.2 of sigma(E) with the RseA anti-sigma factor
PublicationEo-E RNA polymerase transcribes a regulon of folding factors for the bacterial envelope and is induced by physical and chemical stresses. The RseA anti-sigma factor inhibits the activity of Esigma(E) RNA, polymerase. It is shown here that the N-terminal portion of sigma(E), residues 1-153, binds core RNA polymerase. RseA interacts with residues 154-191 of sigma(E), a site that is homologous to region 4, the sigma factor binding...
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Bimodal classification of English allophones employing acoustic speech signal and facial motion capture
PublicationA method for automatic transcription of English speech into International Phonetic Alphabet (IPA) system is developed and studied. The principal objective of the study is to evaluate to what extent the visual data related to lip reading can enhance recognition accuracy of the transcription of English consonantal and vocalic allophones. To this end, motion capture markers were placed on the faces of seven speakers to obtain lip...
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Data on solutions of Hes1 system
Open Research DataHes1 protein (hairy and enhancer of split 1) belongs to the helix-loop-helix (bHLH) family of transcription proteins, i.e. DNA-binding proteins in the promoter region or in another region where regulation of transcription processes occurs. The database collects data on solutions of the Hes1 systems with multiple binding sites and the dimer formation...
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Projektowanie profili maszyn wirnikowych przy zastosowaniu kryterium mini- mum dyssypacji.**2002, 122 s. 126 rys. 2 tab. bibliogr. 35 poz. maszyn. Rozprawa doktorska /2002.06.25/. PG, Wydz. Mechaniczny. Promotor: Prof. dr hab. inż. R. Puzyrewski.
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Palindromic carbazole derivatives: unveiling their antiproliferative effect via topoisomerase II catalytic inhibition and apoptosis induction
PublicationHuman DNA topoisomerases are essential for crucial cellular processes, including DNA replication, transcription, chromatin condensation, and maintenance of its structure. One of the significant strategies employed in cancer treatment involves the inhibition of a specific type of topoisomerase, known as topoisomerase II (Topo II). Carbazole derivatives, recognised for their varied biological activities, have recently become a significant...
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Roman Kotlowski dr hab. inż.
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Detection of apple in orange juice using ultra-fast gas chromatography
PublicationThe determination of authenticity is an increasingly important issue for food quality and safety. The use of an electronic nose based on ultra-fast gas chromatography technique ensures rapid analysis of the volatile compounds from food products. Due to the fact that this technique enables chemical profiling of agricultural products, it can be an effective tool for authentication when combined with chemometrics. In this article...
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Regulation of the First Committed Step in Lipopolysaccharide Biosynthesis Catalyzed by LpxC Requires the Essential Protein LapC (YejM) and HslVU Protease
PublicationWe previously showed that lipopolysaccharide (LPS) assembly requires the essential LapB protein to regulate FtsH-mediated proteolysis of LpxC protein that catalyzes the first committed step in the LPS synthesis. To further understand the essential function of LapB and its role in LpxC turnover, multicopy suppressors of ΔlapB revealed that overproduction of HslV protease subunit prevents its lethality by proteolytic degradation...
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Epitaph of Bartholomew Wagner in St. Mary's Church in Gdańsk
Open Research DataThe data set concerns epigraphy. It refers to the epitaph placed in St. Mary’s Church in Gdańsk, that is dedicated to Bartholomew Wagner, city physician from 1562, who came to Gdańsk from Konigsberg. Data set contains one general photo of the epitaph, transcription of its text in Latin, its translation in Polish, and the biography of the deceased, also...
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Foundation text of St. Mary's Church in Gdańsk
Open Research DataThe data set concerns epigraphy. It refers to the medieval foundation preserved on the wall above the sacristy entrance in St. Mary’s Church in Gdańsk, which confirms that the foundation stone of the temple was laid on 28th of March 1343. The data set contains one general photo of the foundation text, transcription of its text in Latin and its Polish...
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Epitaph of John Schroeder in St. Mary's Church in Gdańsk
Open Research DataThe data set concerns epigraphy. It refers to the epitaph placed in St. Mary’s Church in Gdańsk, that is dedicated to John Schröder, son of Simon. John, as he was a single, erected this epitaph for himself. Data set contains one general photo of the epitaph, transcription of its text in Latin, its translation in Polish, and the biography of the deceased,...
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Epitaph of Henry Giese in St. Mary's Church in Gdańsk
Open Research DataThe data set concerns epigraphy. It refers to the epitaph placed in St. Mary’s Church in Gdańsk, that is dedicated to Henry Giese, a member of merchant family that came from Germany and settled down in Gdańsk in XVI century. Data set contains one general photo of the epitaph, transcription of its text in Latin, its translation in Polish, and the biography...
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Epitaph of Oehm family in St. Mary's Church in Gdańsk
Open Research DataThe data set concerns epigraphy. It refers to the epitaph placed in St. Mary’s Church in Gdańsk, that is dedicated to Öhm family, rather unknown to Gdańsk. The epitaph was erected by two latest representatives of family – John and Andrew. Data set contains one general photo of the epitaph, transcription of its text in Latin, its translation in Polish,...
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Alms-panel of Anton Moeller in St. Mary's Church in Gdańsk
Open Research DataThe data set concerns epigraphy. It refers to the Alms-panel placed in St. Mary’s Church in Gdańsk, that is the work of Gdańsk painter Antoni Moller, made in 1607, or rather – to be more specific – to lower part of this work, which are the verses from Holy Bible. Data set contains one general photo of the inscription, transcription of its text in Latin...
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Changes in gene methylation patterns in neonatal murine hearts: Implications for the regenerative potential
PublicationBackground The neonatal murine heart is able to regenerate after severe injury; this capacity however, quickly diminishes and it is lost within the first week of life. DNA methylation is an epigenetic mechanism which plays a crucial role in development and gene expression regulation. Under investigation here are the changes in DNA methylation and gene expression patterns which accompany the loss of regenerative potential. Results The...
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Epitaph of Anna Loitz in St. Mary's Church in Gdansk
Open Research DataThe data set concerns epigraphy. It refers to the epitaph placed in St. Mary’s Church in Gdańsk which is dedicated to Anna Loitz, daughter of the well-known merchant Michał Loitz, wife of the juror and councilor Jan Konnert the Younger. The data set contains one general photo of the epitaph, transcription of its text in Latin, its Polish translation,...
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Plaque of Dorothy and John Brandes in St. Mary's Church in Gdańsk
Open Research DataThe data set concerns epigraphy. It refers to the plaque placed in St. Mary’s Church in Gdańsk, that is dedicated to John Brandes, highly influential citizen of Gdańsk, whose official career was crowned with the function of mayor, and his wife Dorothy née Zimmermann. The plaque was placed in the church in 1586. Data set contains two photos of the plaque,...
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Epitaph of Martin Ramus in St. Mary's Church in Gdańsk
Open Research DataThe data set concerns epigraphy. It refers to the epitaph placed in St. Mary’s Church in Gdańsk which is dedicated to Martin Ramus, teacher of the parochial school at the St. Mary church in Gdansk who died on 24th of June 1631 in Gdańsk. The data set contains one general photo of the epitaph, transcription of its text in Latin, its Polish translation,...
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Epitaph of Guldenstern family in St. Mary's Church in Gdańsk
Open Research DataThe data set concerns epigraphy. It refers to the epitaph placed in St. Mary’s Church in Gdańsk, that is dedicated to family Guldenstern, very noble family that came to Poland with the king of Sweden and Poland – Sigismund III Vasa, and to representatives of Swedish emigration. Data set contains one general photo of the epitaph, transcription of its...
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Epitaph of Clemens and Gabriel Coelmer in St. Mary's Church in Gdańsk
Open Research DataThe data set concerns epigraphy. It refers to the epitaph placed in St. Mary’s Church in Gdańsk which is dedicated to Clemens and Gabiel Coelmer, sons of a Gdańsk merchant; Clemens devoted himself to a clerical career in Gdańsk and became a councilor. The data set contains one general photo of the epitaph, transcription of its text in Latin, its Polish...
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Sepulchral plate of Dorothy and Matthias Zimmermann in St. Mary's Church in Gdańsk
Open Research DataThe data set concerns epigraphy. It refers to the sepulchral plate placed in St. Mary’s Church in Gdańsk which is dedicated to Dorothy and Matthias Zimmermann, a wealthy merchant and Gdańsk mayor, trusted courtier of King Alexander Jagiellon. The data set contains one general photo of the sepulchral plate, transcription of its text in Latin, its Polish...
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Cabbage Juices and Indoles Modulate the Expression Profile of AhR, ERα, and Nrf2 in Human Breast Cell Lines
PublicationOur previous studies showed the diversified effect of cabbage juices and indoles on the estrogen metabolism key enzymes (CYP1A1, CYP1A2, CYP1B1) in breast epithelial cells differing in ER status, i.e., in tumorigenic—MCF7, MDA-MB-231 and non-tumorigenic—MCF10A cells. The aim of the present study was to further investigate the mechanism of chemopreventive action of cabbage juice and its active components by evaluating their effect...
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Policy of supporting scientific and research activities in selected private universities in Gdańsk, Sopot and Gdynia in 2010
Open Research DataAs the research results show, all surveyed universities support research primarily by helping to obtain funds from the EU and providing resources for scientific literature. 6 universities declare financing investments in equipment and activities supporting research, as well as assistance in obtaining funds from other sources. However, none of the universities...
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Epitaph of Bartholomew Schachmann in St. Mary's Church in Gdańsk
Open Research DataThe data set concerns epigraphy. It refers to the epitaph placed in St. Mary’s Church in Gdańsk which is dedicated to Bartholomew Schachmann, the mayor to whom Gdańsk owes, among others, the creation of the Neptune Fountain and the decoration of the Red Hall in the New Town Hall. The data set contains one general photo of the epitaph, transcription...
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Epitaph of George Wildtberger in St. Mary's Church in Gdańsk
Open Research DataThe data set concerns epigraphy. It refers to the epitaph placed in St. Mary’s Church in Gdańsk which is dedicated to George Wildtberger, personal secretary to king Sigismund III Vasa of Sweden and Poland who died on 8th of February 1593 in Gdańsk. The data set contains one general photo of the epitaph, transcription of its text in Latin, its Polish...
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Analysis of a gene expression model
PublicationWe study a mathematical model of gene transcription and protein synthesis with negative feedback. We consider a system of equations taking into account the number of active binding sites, the way in which dimers bind to DNA and time delay in translation process. For a simplified model that consist of three ordinary differential equations with time delay we derive conditions for stability of the positive steady state and for the...
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Seminarium dyplomowe mgr KB 2021
e-Learning CoursesSeminarium dyplomowe dla studentów 3-go semestru II stopnia studiów stacjonarnych na profili konstrukcje betonowe.
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Epitaph of John Sinclair in St. Mary's Church in Gdańsk
Open Research DataThe data set concerns epigraphy. It refers to the epitaph placed in St. Mary’s Church in Gdańsk, which is dedicated to John Sinclair, an Scottish nobleman, the 6th count of Caithness. He was general and from 1716 was chief commandant of the defenses in Gdańsk. He died in 1731 in Gdańsk. Data set contains one general photo of the epitaph, transcription...