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Search results for: SERINE PROTEINASE
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Optimized procedure of extraction, purification and proteomic analysis of nuclear proteins from mouse brain
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An animal model of the procognitive properties of cysteine protease inhibitor and immunomodulatory peptides based on colostrum.
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The role of the LB structural loop and its interactions with the PDZ domain of the human HtrA3 protease
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The LA Loop as an Important Regulatory Element of the HtrA (DegP) Protease from Escherichia coli
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Expression of INHβA and INHβB proteins in porcine oocytes cultured in vitro is dependent on the follicle size
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Elastic-contractile model proteins: Physical chemistry, protein function and drug design and delivery
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Efficient parallel algorithms in global optimization of potential energy functions for peptides, proteins, and crystals
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Electrodes Based on a Titanium Dioxide Nanotube–Spherical Silver Nanoparticle Composite for Sensing of Proteins
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The Effect of Hyperbaric Storage on the Nutritional Value and Retention of Certain Bioactive Proteins in Human Milk
PublicationHuman milk (HM) contains the essential macronutrients and bioactive compounds necessary for the normal growth and development of newborns. The milk collected by human milk banks is stored frozen and pasteurized, reducing its nutritional and biological value. The purpose of this study was to determine the effect of hyperbaric storage at subzero temperatures (HS-ST) on the macronutrients and bioactive proteins in HM. As control samples,...
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Post mortem development of meat quality as related to changes in cytoskeletal proteins of chicken muscles
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RecA Proteins from Deinococcus geothermalis and Deinococcus murrayi - Cloning, Purification and Biochemical Characterisation
PublicationEscherichia coli RecA plays a crucial role in recombinational processes, the induction of SOS response and mutagenic lesion bypasses. It has also been demonstrated that RecA protein is indispensable when it comes to the reassembly of shattered chromosomes in gamma-irradiated Deinococcus radiodurans, one of the most radiation-resistant organisms known. Moreover, some functional differences between E. coli and D. radiodurans RecA...
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The Impact of the Antigenic Composition of Chimeric Proteins on Their Immunoprotective Activity against Chronic Toxoplasmosis in Mice
PublicationToxoplasmosis may pose a serious threat for individuals with weakened or undeveloped immune systems. However, to date, there is no specific immunoprophylaxis for humans. Thus, the aim of this study was to evaluate the immunogenicity of three trivalent—SAG2-GRA1-ROP1L (SGR), SAG1L-MIC1-MAG1 (SMM), and GRA1-GRA2-GRA6 (GGG)—and two tetravalent—SAG2-GRA1-ROP1-GRA2 (SGRG) and SAG1-MIC1-MAG1-GRA2 (SMMG)—chimeric T. gondii proteins, as...
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Identification and properties of the psychrophilic bacterium Desulfolatea psychrophila single-stranded DNA binding proteins
PublicationTo study the biochemical properties of SSB from Desulfolatea psychrophila (DpsSSB), we have cloned the ssb genes obtained by PCR and have developed Escherichia coli overexpression systems. The gene consists of an open reading frame of 426 nucleotides encoding SSB protein of 142 amino acids with a calculated molecular mass of 15.6 kDa and it is the smallest known bacterial SSB protein indentified to date. The amino-acid sequence...
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Interfacial water controls the process of adsorption of hyperactive antifreeze proteins onto the ice surface
PublicationA mechanism of interactions between the ice-binding surface of a hyperactive antifreeze protein molecule and the ice surface is proposed, involving the influence of water present between the two surfaces on the behavior of the approaching molecule. It is demonstrated that the interfacial water, even before its full solidification, can act as a factor that pushes away or pulls nearer the protein molecule to ensure its proper positioning....
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Effect of urea and glycine betaine on the hydration sphere of model molecules for the surface features of proteins
PublicationWater properties may significantly affect protein stability. Osmolytes are compounds that intrinsically affect water in many different ways and thus can influence proteins with this type of indirect mechanism. In this study, we characterize water properties in ternary solutions: model–water–osmolyte, with two model molecules: N-methylacetamide (NMA) and dimethyl sulfoxide (DMSO) and two osmolytes: glycine betaine (TMG)and urea....
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Interactions of telomeric proteins with nucleic acids: sequence recognition on intact and oxidatively damaged telomeres
PublicationTelomeres are complex nucleoprotein assemblies that play a vital role in the maintenance of functional ends of linear chromosomes. Telomeric DNA, composed of tandem repeats of the 5'-TTAGGG-3' motif, solves the so-called end replication problem: as chromosomes shorten with each cell division, no information is lost, and the telomere can be re-extended. In the cell, many protein factors regulate telomere length, nuclear positioning...
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Optimization of parallel implementation of UNRES package for coarse‐grained simulations to treat large proteins
PublicationWe report major algorithmic improvements of the UNRES package for physics-based coarse-grained simulations of proteins. These include (i) introduction of interaction lists to optimize computations, (ii) transforming the inertia matrix to a pentadiagonal form to reduce computing and memory requirements, (iii) removing explicit angles and dihedral angles from energy expressions and recoding the most time-consuming energy/force terms...
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Organic solvents aggregating and shaping structural folding of protein, a case study of the protease enzyme
PublicationLow solubility of reactants or products in aqueous solutions can result in the enzymatic catalytic reactions that can occur in non-aqueous solutions. In current study we investigated aqueous solutions containing different organic solvents / deep eutectic solvents (DESs) that can influence the protease enzyme's activity, structural, and thermal stabilities. Retroviral aspartic protease enzyme is responsible for the cleavage of the...
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Two bacterial small heat shock proteins, IbpA and IbpB, form a functional heterodimer
PublicationSmall heat shock proteins (sHsps) are a conserved class of ATP-independent chaperones which in stress conditions bind to unfolded protein substrates and prevent their irreversible aggregation. Substrates trapped in sHsps-containing aggregates are efficiently refolded into native structures by ATP-dependent Hsp70 and Hsp100 chaperones. Most γ-proteobacteria possess a single sHsp (IbpA), while in a subset of Enterobacterales, as...
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Nanoparticle Tracking Analysis of Urinary Extracellular Vesicle Proteins as a New Challenge in Laboratory Medicine
PublicationUrinary extracellular vesicle (uEV) proteins may be used as specific markers of kidney damage in various pathophysiological conditions. The nanoparticle-tracking analysis (NTA) appears to be the most useful method for the analysis of uEVs due to its ability to analyze particles below 300 nm. The NTA method has been used to measure the size and concentration of uEVs and also allows for a deeper analysis of uEVs based on their protein...
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Exploiting the S4–S5 Specificity of Human Neutrophil Proteinase 3 to Improve the Potency of Peptidyl Di(chlorophenyl)-phosphonate Ester Inhibitors: A Kinetic and Molecular Modeling Analysis
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Determination of denaturation temperature of connective tissue proteins by viscometric measurements.
Open Research DataViscometric denaturation temperature of connective tissue proteins was determined by measuring viscosity with a Brookfield viscometer, using a LV SC4 - 18, 25 or LV3 spindle and shear rates from 50 to 110 s-1 (Fig.1). Freeze-dried protein samples were dissolved in 0.5 M acetic acid at 4 °C and concentration of 20 mg/mL. The solution was stirred with...
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EU Project of Life Programme “Algae Service for Life” Creates Tools for Ecological Service to Mitigate Cyanobacteria and Macroalgae Blooms in Freshwater Ecosystems
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Possible efficiency increasing of ship propulsion and marine power plant with the system combined of marine diesel engine, gas turbine and steam turbine
PublicationW rozdziale przedstawiono koncepcję układu kombinowanego okrętowego lub morskiej pływającej elektrowni dużej mocy złożonego z silnika głównego tłokowego oraz skojarzonych z nim turbiny gazowej mocy i układu turbiny parowej, wykorzystujących energię zawartą w spalinach wylotowych silnika głównego tłokowego. Rozpatrywano możliwości zastosowania takich układów w układach okrętowych z punktu widzenia sprawnościowego. Podano możliwości...
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Constituents of organic alkalinity in pore water of marine sediments
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Structural pounding models with Hertz spring and nonlinear damper
PublicationW artykule przedstawiono porównanie możliwości wykorzystania dwóch modeli zderzeń: nieliniowego modelu lepkosprężystego i modelu Hertz'a z dodatkowym tłumieniem. Efektywność każdego z modeli zbadano porównując wyniki analiz numerycznych z wynikami badań eksperymentalnych. Wyniki pracy pokazują, iż zastosowanie nieliniowego modelu lepkosprężystego prowadzi do mniejszych błędów w przebiegach czasowych siły zderzenia oraz do mniejszych...
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Accuracy analysis of the radio location service in the sea environment
PublicationW artykule przedstawiono koncepcję systemu bezpieczeństwa na morzu w oparciu o istniejące systemy komórkowe. Scharakteryzowano problem lokalizowania terminala ruchomego przez sieć w warunkach morskich. Przedstawiono wyniki badań przeprowadzonych w warunkach rzeczywistych w odniesieniu do efektywności lokalizowania terminala na morzu. Przedstawiono wnioski, wypływające z przeprowadzonych analiz.
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Scale effects in cavitation experiments with marine propeller models
PublicationPraca zawiera przegląd specyficznych efektów skali występujących w badaniach kawitacyjnych modeli śrub okrętowych oraz analizę ich wpływu na prognozowane osiągi śrub okrętowych w skali rzeczywistej.
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End-to-end service survivability under attacks on networks
PublicationW artykule zaproponowano model znajdowania przeżywalnych i odpornych na ataki połączeń od końca do końca dla sieci o topologii bezskalowej. Głównymi założeniami są: zróżnicowanie sposobu zapewniania przeżywalności połączeń w zależności od klasy ruchu oraz omijanie przez ścieżki aktywne węzłów, narażonych na ataki (tzw. centrów). Wprowadzono nową metrykę dla wyznaczania ścieżek, proporcjonalną do wymaganej jakości obsługi połączeń,...
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Experimental tests of water lubricated marine rubber bearing
PublicationW referacie przedstawiono stosowane obecnie rodzaje łożysk gumowych smarowanych wodą. Omówiono ich zalety i wady.W drugiej części pracy przedstawiono wyniki badań eksperymantalnych typowego okrętowego łożyska gumowego. Uzyskane rezultaty porównano z wynikami badań łożysk z polimerową panwią.
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End-to-end service survivability under attacks on networks
PublicationW artykule zaproponowano model znajdowania przeżywalnych i odpornych na ataki połączeń od końca do końca dla sieci o topologii bezskalowej. Głównymi założeniami są: zróżnicowanie sposobu zapewniania przeżywalności połączeń w zależności od klasy ruchu oraz omijanie przez ścieżki aktywne węzłów, narażonych na ataki (tzw. centrów). Wprowadzono nową metrykę dla wyznaczania ścieżek, proporcjonalną do wymaganej jakości obsługi połączeń,...
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Membrane Distillation of Saline Water Contaminated with Oil and Surfactants
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Low-Sulphur Marine Fuels—Panacea or a New Threat?
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Mytilidae as model organisms in the marine ecotoxicology of pharmaceuticals - A review
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Computer simulation of induction heating system with series inverter
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Guitar String Sound Retrieved from Moving Pixels
PublicationThe aim of this study was to develop a method of visual recording and analyzing the vibrations of guitar strings using high-speed cameras and dedicated video processing algorithms. The recording of a plucked string reveals the way in which the deformations propagate, composing the standing and travelling wave. The paper compares the results for a few selected models of classical and acoustic guitars, and it involves processing...
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Regeneration of marine engine valves using laser surfacing
PublicationThis article presents an analysis of the applicability of laser surfacing of the exhaust valve face of a marine diesel engine using cobalt-based powder. After preparation by machining, the selected valves were subjected to laser surfacing using a high-power ROFIN DL020 laser. The EuTroLoy 16012 powder was used in the surfacing process. One of the valves was cut and subjected to metallographic examination and hardness measurements,...
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Marine polymers in tissue bioprinting: Current achievements and challenges
PublicationBioprinting has a critical role in tissue engineering, allowing the creation of sophisticated cellular scaffolds with high resolution, shape fidelity, and cell viability. Achieving these parameters remains a challenge, necessitating bioinks that are biocompatible, printable, and biodegradable. This review highlights the potential of marine-derived polymers and crosslinking techniques including mammalian collagen and gelatin along...
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Algorithms of fast service restoration in survivable multilayer networks
PublicationGłównym celem rozprawy jest zaproponowanie nowych modeli/algorytmów doboru tras zapewniających przeżywalność usług w sieciach IP-MPLS/WDM poprzez zastosowanie wyznaczonych zawczasu ścieżek zabezpieczających. Zakres pracy obejmuje: dokonanie przeglądu mechanizmów transmisji informacji w warstwowych sieciach teleinformatycznych IP-MPLS/WDM; szczegółowy opis sposobów zapewniania przeżywalności usług; zaproponowanie nowych metod doboru...
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Selected problems on application of steel sandwich panels to marine
PublicationW pracy przedstawiono wybrane problemy stosowania stalowych laserowo spawanych paneli w konstrukcji statku. Problemy te wynikają ze specyfiki cienkiej, spawanej laserowo konstrukcji stalowej i obejmują szerokie spektrum zagadnień począwszy od własności wytrzymałościowychy elementarnego połączenia teowego spawanego laserowo poprzez łączenie paneli ze sobą a skończywszy na integracji paneli z konstrukcją tradycyjną.