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Prediction of Protein Structure by Template-Based Modeling Combined with the UNRES Force Field
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Use of Restraints from Consensus Fragments of Multiple Server Models To Enhance Protein-Structure Prediction Capability of the UNRES Force Field
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A Maximum-Likelihood Approach to Force-Field Calibration
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Improved Consensus-Fragment Selection in Template-Assisted Prediction of Protein Structures with the UNRES Force Field in CASP13
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Free Energies of the Disassembly of Viral Capsids from a Multiscale Molecular Simulation Approach
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Modified monopole ring antennas as a solution for HiperLAN1/2 and IEEE 802.11b/g standard devices
PublikacjaZaprojektowano, wykonano i przebadano pierścieniową antenę planarną przeznaczona do aplikacji multisystemowych. Zastosowano system zasilania poprzez linie mikropaskową oraz dobrano wymiary i kształty pierścieni (promienników) w taki sposób, aby odpowiednio ''ulokować'' podzakresy pracy anteny. Zrealizowany prototyp anteny pracuje w zakresie standardów IEEE 802.11b/g oraz HiperLAN1/2.
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Chirality Measures of α-Amino Acids
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The Microwave Sources for EPR Spectroscopy
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Automatic Image and Speech Recognition Based on Neural Network
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General paradigm for distilling classical key from quantum states
PublikacjaIn this paper, we develop a formalism for distilling aclassical key from a quantum state in a systematic way, expandingon our previous work on a secure key from bound entanglement(Horodecki et al., 2005). More detailed proofs, discussion, andexamples are provided of the main results. Namely, we demonstratethat all quantum cryptographic protocols can be recast in away which looks like entanglement theory, with the only changebeing...
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Linux scheduler improvement for time demanding network applications, running on Communication Platform Systems
PublikacjaCommunication Platform Systems as ex. ATCA standard blades located in standardized chassis provides high level communication services between system peripherals. Each ATCA blade brings dedicated functionality to the system but can as well exist as separated host responsible for servicing set of task. According to platform philosophy these parts of system can be quite independent against another solutions provided by competitors....
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A few steps more towards NPT bound entanglement
PublikacjaIn this paper, existence of bound entangled states with nonpositive partial transpose (NPT) is considered. As one knows, existence of such states would in particular imply nonadditivity of distillable entanglement. Moreover, it would rule out a simple mathematical description of the set of distillable states. The particular state, known to be 1-copy nondistillable and supposed to be bound entangled, is considered. The problem of...
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On thermal stability of topological qubit in Kitaev's 4D model
PublikacjaWe analyse stability of the four-dimensional Kitaev model-a candidate for scalable quantum memory - in finite temperature within the weak coupling Markovian limit. It is shown that, below a critical temperature, certain topological qubit observables X and Z possess relaxation times exponentially long in the size of the system. Their construction involves polynomial in system size algorithm which uses as an input the results of...
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Why is IPv6 Deployment Important for the Internet Evolution?
PublikacjaAbstract-Replacing the IPv4 protocol with IPv6 on the Internet is currently one of the aims of the European Union policy. The main reason for this replacement is the effeteness of the addresses pool in the IPv4 protocol, which can cause serious complications in the evolution of the Internet and its adaptation in new areas, e.g., in next generation mobile telephony or the so called Internet of Things. Simultaneously, the addressing...
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The Realization of NGN Architecture for ASON/GMPLS Network
PublikacjaFor the last decades huge efforts of telecommunication,Internet and media organizations have been focusingon creating standards and implementing one common networkdelivering multimedia services - Next Generation Network.One of the technologies which are very likely to beused in NGN transport layer is ASON/GMPLS optical network.The implementation of ASON/GMPLS technology usingopen source software and its results are the subject...
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Multi Queue Approach for Network Services Implemented for Multi Core CPUs
PublikacjaMultiple core processors have already became the dominant design for general purpose CPUs. Incarnations of this technology are present in solutions dedicated to such areas like computer graphics, signal processing and also computer networking. Since the key functionality of network core components is fast package servicing, multicore technology, due to multi tasking ability, seems useful to support packet processing. Dedicated...
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Communication Platform for Evaluation of Transmitted Speech Quality
PublikacjaA voice communication system designed and implemented is described. The purpose of the presented platform was to enable a series of experiments related to the quality assessment of algorithms used in the coding and transmitting of speech. The system is equipped with tools for recording signals at each stage of processing, making it possible to subject them to subjective assessments by listening tests or, objective evaluation employing...
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Vacuum Rabi oscillation in nonzero-temperature open cavity
PublikacjaPorównania teorii oscylacji Rabiego z eksperymentem [M. Wilczewski, M. Czachor, Phys. Rev. A 79, 0333836 (2009)] sugerują, że parametry wnęki doświadczeniu z dużą ilością fotonów mogą być znacznie mniejsze niż te otrzymane dla stanów prawie próżniowych. W tym kontekście pokazujemy, że wniosek pozostaje bez zmian, nawet jeśli do opisu stanu początkowego wnęki zastosuje się bardziej realistyczny opis.
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Intelligent video and audio applications for learning enhancement
PublikacjaThe role of computers in school education is briefly discussed. Multimodal interfaces development history is shortly reviewed. Examples of applications of multimodal interfaces for learners with special educational needs are presented, including interactive electronic whiteboard based on video image analysis, application for controlling computers with facial expression and speech stretching audio interface representing audio modality....
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Two examples of Quantum Dynamical Semigroups
PublikacjaThe Hamiltonians of the considered bi-partite systems are of the form $$ H_{S,R} = H_S /times 1_R + Q_{S} /times M_R + 1_S /times H_R $$ Subindex $S$ corresponds to the observed system and $R$ to the reservoir (the enviroment of $S$). Two classes of systems are distinguished: the discrete-continuous...
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A hybrid-mesh solution for coverage issues in WiMAX metropolitan area networks.
PublikacjaThe new WiMAX technology offers several advantages over the currently available (GSM or UMTS-based) solutions. It is a cost effective, evolving, and robust technology providing quality of service guarantees, high reliability, wide coverage and non-line-of-sight (NLOS) transmission capabilities. All these features make it particularly suitable for densely populated urban environments. In this paper we discuss the design and implementation...
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Low-dimensional bound entanglement with one-way distillable cryptographic key
PublikacjaIn this paper, we provide a class of bound entangled states that have positive distillable secure key rate. The smallest state of this kind is 4 circle times 4, which shows that peculiar security contained in bound entangled states does not need high-dimensional systems. We show that for these states a positive key rate can be obtained by one-way Devetak-Winter (DW) protocol. Subsequently, the volume of bound entangled key-distillable...
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Quantum key distribution based on private states: Unconditional security over untrusted channels with zero quantum capacity
PublikacjaIn this paper, we prove unconditional security for a quantum key distribution (QKD) protocol based on distilling pbits (twisted ebits) from an arbitrary untrusted state that is claimed to contain distillable key. Our main result is that we can verify security using only public communication-via parameter estimation of the given untrusted state. The technique applies even to bound-entangled states, thus extending QKD to the regime...
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Propagation Path Loss Modeling in Container Terminal Environment
PublikacjaThis paper describes novel method of path loss modeling for radio communication channels in container port area. Multi-variate empirical model is presented, based on multidimensional regression analysis of real path loss measurements from container terminal environment. The measurement instruments used in propagation studies in port area are also described.
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A framework for detection of selfishness in multihop mobile ad hoc networks
PublikacjaThe paper discusses the need for a fully-distributed selfishness detection mechanism dedicated for multihop wireless ad hoc networks which nodes may exhibit selfish forwarding behaviour. The main contribution of this paper is an introduction to a novel approach for detecting and coping with the selfish nodes. Paper describes a new framework based on Dempster-Shafer Theory called Dempster-Shafer Theory-based Selfishness Detection...
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Modulo N Backoff Scheme for effective QoS differentiation and increased bandwidth utilization in IEEE 802.11 networks
PublikacjaThe paper presents a new "modulo N" channel access scheme for wireless Local Area Networks (WLANs). The novel solution derives from the Distributed Coordination Function (DCF) of the IEEE 802.11 standard, further elaborated as Enhanced Distribution Channel Access (EDCA) by the 802.11e draft specification. The main innovation concerns improvement of the binary exponential backoff scheme used for collision avoidance in 802.11 networks....
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Role of Glycosaminoglycans in Procathepsin B Maturation: Molecular Mechanism Elucidated by a Computational Study
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Role of Oligosaccharide Chain Polarity in Protein–Glycosaminoglycan Interactions
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Multi-Objective Genetic Algorithm (MOGA) As a Feature Selecting Strategy in the Development of Ionic Liquids’ Quantitative Toxicity–Toxicity Relationship Models
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Metadata harvesting in regional digital libraries in the PIONIER network
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Multimedia polysensory integration training system dedicated to children with educational difficulties
PublikacjaThis paper aims at presenting a multimedia system providing polysensory train- ing for pupils with educational difficulties. The particularly interesting aspect of the system lies in the sonic interaction with image projection in which sounds generated lead to stim- ulation of a particular part of the human brain. The system architecture, video processing methods, therapeutic exercises and guidelines for children’s interaction...
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Digital Audio Broadcasting or Webcasting: A Network Quality Perspective
PublikacjaIn recent years, many alternative technologies of delivering audio content have emerged, with different advantages and disadvantages. In this paper pros and cons of digital audio broadcasting and webcasting transmission techniques in a network quality perspective are described. A case study of user expectations with respect to currently available services is analyzed, and the perceived quality of real digital broadcasted and webcasted...
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Interworking and Cross-layer Service Discovery Extensions for IEEEE802.11s Wireless Mesh Standard
PublikacjaWith the rapid popularization of mobile end-user electronic devices wireless network technologies begin to play a crucial role as networks access technologies. While classic point-to-multipoint wireless access systems, based on fixed infrastructure of base stations providing access to clients, remain the main most popular solution, an increasing attention is devoted to wireless mesh systems, where each connecting client can extend...
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Decoherence-free communication over multiaccess quantum channels
PublikacjaIn this paper we consider decoherence-free communication over multiple access and k-user quantum channels. First, we concentrate on a hermitian unitary noise model U for a two-access bi-unitary channel and show that in this case a decoherence-free code exists if the space of Schmidt matrices of an eigensubspace of U exhibits certain properties of decomposability. Then, we show that our technique is also applicable for generic random unitary...
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Radionuclides activity and effective doses referred to geological formations
PublikacjaNaturally occurring radioactive materials (NORM) are present in Earth’s crust and they caused natural background radiation, variable in different regions. Liquid, gas and solid radionuclides emit three types of radiation – alpha, beta and gamma. Fluctuations of natural radioactivity in different geological formations in the world and in Poland were compared in relation to radiological hazard. Also drilling cuttings from boreholes...
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Digital Fingerprinting Based on Quaternion Encryption Scheme for Gray-Tone Images
PublikacjaIn this paper a new idea of digital images fingerprinting is proposed. The method is based on quaternion encryption in the Cipher Block Chaining (CBC) mode. Quaternion sare hyper-complex numbers of rank 4 and thus often applied to mechanics in three-dimensional space. The encryption algorithm described in the paper is designed for gray-tone images but can easily be adopted for color ones. For the encryption purpose, the algorithm...
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Music Recommendation System
PublikacjaThe paper focuses on optimization vector content feature for the music recommendation system. For the purpose of experiments a database is created consisting of excerpts of music les. They are assigned to 22 classes corresponding to dierent music genres. Various feature vectors based on low-level signal descriptors are tested and then optimized using correlation analysis and Principal Component Analysis (PCA). Results of the experiments...
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On the Characteristic Graph of a Discrete Symmetric Channel
PublikacjaWe present some characterizations of characteristic graphs of row and/or column symmetric channels. We also give a polynomial-time algorithm that decides whether there exists a discrete symmetric channel whose characteristic graph is equal to a given input graph. In addition, we show several applications of our results.
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Calculating the Partition Coefficients of Organic Solvents in Octanol/Water and Octanol/Air
PublikacjaPartition coefficients define how a solute is distributed between two immiscible phases at equilibrium. The experimental estimation of partition coefficients in a complex system can be an expensive, difficult, and time-consuming process. Here a computational strategy to predict the distributions of a set of solutes in two relevant phase equilibria is presented. The octanol/water and octanol/air partition coefficients are predicted...
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Database of speech and facial expressions recorded with optimized face motion capture settings
PublikacjaThe broad objective of the present research is the analysis of spoken English employing a multiplicity of modalities. An important stage of this process, discussed in the paper, is creating a database of speech accompanied with facial expressions. Recordings of speakers were made using an advanced system for capturing facial muscle motion. A brief historical outline, current applications, limitations and the ways of capturing face...
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The Role of Electrostatics in Enzymes: Do Biomolecular Force Fields Reflect Protein Electric Fields?
PublikacjaPreorganization of large, directionally oriented, electric fields inside protein active sites has been proposed as a crucial contributor to catalytic mechanism in many enzymes, and it may be efficiently investigated at the atomistic level with molecular dynamics simulations. Here, we evaluate the ability of the AMOEBA polarizable force field, as well as the additive Amber ff14SB and Charmm C36m models, to describe the electric...
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System for monitoring road slippery based on CCTV cameras and convolutional neural networks
PublikacjaThe slipperiness of the surface is essential for road safety. The growing number of CCTV cameras opens the possibility of using them to automatically detect the slippery surface and inform road users about it. This paper presents a system of developed intelligent road signs, including a detector based on convolutional neural networks (CNNs) and the transferlearning method employed to the processing of images acquired with video...
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An audio-visual corpus for multimodal automatic speech recognition
Publikacjareview of available audio-visual speech corpora and a description of a new multimodal corpus of English speech recordings is provided. The new corpus containing 31 hours of recordings was created specifically to assist audio-visual speech recognition systems (AVSR) development. The database related to the corpus includes high-resolution, high-framerate stereoscopic video streams from RGB cameras, depth imaging stream utilizing Time-of-Flight...
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Automatic music genre classification based on musical instrument track separation / Automatyczna klasyfikacja gatunku muzycznego wykorzystująca algorytm separacji dźwięku instrumentó muzycznych
PublikacjaThe aim of this article is to investigate whether separating music tracks at the pre-processing phase and extending feature vector by parameters related to the specific musical instruments that are characteristic for the given musical genre allow for efficient automatic musical genre classification in case of database containing thousands of music excerpts and a dozen of genres. Results of extensive experiments show that the approach...
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Path-based methods on categorical structures for conceptual representation of wikipedia articles
PublikacjaMachine learning algorithms applied to text categorization mostly employ the Bag of Words (BoW) representation to describe the content of the documents. This method has been successfully used in many applications, but it is known to have several limitations. One way of improving text representation is usage of Wikipedia as the lexical knowledge base – an approach that has already shown promising results in many research studies....
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Validating data acquired with experimental multimodal biometric system installed in bank branches
PublikacjaAn experimental system was engineered and implemented in 100 copies inside a real banking environment comprising: dynamic handwritten signature verification, face recognition, bank client voice recognition and hand vein distribution verification. The main purpose of the presented research was to analyze questionnaire responses reflecting user opinions on: comfort, ergonomics, intuitiveness and other aspects of the biometric enrollment...
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Amplifying the Randomness of Weak Sources Correlated With Devices
PublikacjaThe problem of device-independent randomness amplification against no-signaling adversaries has so far been studied under the assumption that the weak source of randomness is uncorrelated with the (quantum) devices used in the amplification procedure. In this paper, we relax this assumption, and reconsider the original protocol of Colbeck and Renner using a Santha-Vazirani (SV) source. To do so, we introduce an SV-like condition...
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Tacit knowledge acquisition & sharing, and its influence on innovations: A Polish/US cross-country study
PublikacjaThis study measures the relationship between tacit knowledge sharing and innovation in the Polish (n=350) and US (n=379) IT industries. Conceptually, the study identifies the potential sources of tacit knowledge development by individuals. That is, the study examines how “learning by doing” and “learning by interaction” lead to a willingness to share knowledge and, as a consequence, to support process and product/service innovation....
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On the Limiting Distribution of Lempel-Ziv’78 Redundancy for Memoryless Sources
PublikacjaWe study the Lempel-Ziv'78 algorithm and show that its (normalized) redundancy rate tends to a Gaussian distribution for memoryless sources. We accomplish it by extending findings from our 1995 paper, in particular, by presenting a new simplified proof of the central limit theorem (CLT) for the number of phrases in the LZ'78 algorithm. We first analyze the asymptotic behavior of the total path length in the associated digital search...
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Enhancing Security of Advanced Metering Infrastructure by Introducing Threshold Attendance Protocol
PublikacjaThe industry pushes towards smart grid systems in order to resolve current limitations of the unidirectional legacy power grid infrastructure. By introducing Advanced Metering Infrastructure (AMI) as an integral part of the smart grid solution, the utility company obtains an invaluable tool to optimize its network, lower the operational costs, and improve quality of service. Unfortunately, introducing two-way communication poses...