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Wyniki wyszukiwania dla: BOOSTED TREES
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On a matching distance between rooted phylogenetic trees
PublikacjaThe Robinson–Foulds (RF) distance is the most popular method of evaluating the dissimilarity between phylogenetic trees. In this paper, we define and explore in detail properties of the Matching Cluster (MC) distance, which can be regarded as a refinement of the RF metric for rooted trees. Similarly to RF, MC operates on clusters of compared trees, but the distance evaluation is more complex. Using the graph theoretic approach...
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Paired bondage in trees
PublikacjaW pracy zdefiniowano pojęcie liczby zniewolenia parami jako moc najmniejszego zbioru krawędzi, którego usunięcie z grafu spowoduje wzrost liczby dominowania parami. W szczególności scharakteryzowane są wszystkie drzewa, w których liczba zniewolenia wynosi 0, czyli takie, w których usunięcie dowolnego podzbioru krawędzi nie zwiększy liczby dominowania parami.
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On the partition dimension of trees
PublikacjaGiven an ordered partition Π={P1,P2,…,Pt} of the vertex set V of a connected graph G=(V,E), the partition representation of a vertex v∈V with respect to the partition Π is the vector r(v|Π)=(d(v,P1),d(v,P2),…,d(v,Pt)), where d(v,Pi) represents the distance between the vertex vv and the set Pi. A partition Π of V is a resolving partition of G if different vertices of G have different partition representations, i.e., for every...
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Preserving Trees in Automata
PublikacjaWe present a method to store additional information in a minimal automaton so that it is possible to compute a corresponding tree node number for a state. The number can then be used to retrieve additional information. The method works for minimal (and any other) deterministic acyclic finite state automata (DFAs). We also show how to compute the inverse mapping.
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Forests Trees and Livelihoods
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Trees Forests and People
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TREES-STRUCTURE AND FUNCTION
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Connected searching of weighted trees
PublikacjaW artykule rozważamy problem spójnego przeszukiwania drzew obciążonych. Autorzy w [L. Barriere i inni, Capture of an intruder by mobile agents, SPAA'02 (2002) 200-209] twierdzą, że istnieje wielomianowy algorytm dla problemu obliczania optymalnej strategii przeszukiwania obciążonego drzewa. W niniejszej pracy pokazano, że problem ten jest obliczeniowo trudny nawet dla wierzchołkowo-obciążonych drzew (wagi krawędzi równe 1) oraz...
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The complexity of list ranking of trees
PublikacjaUporządkowane kolorowanie grafu polega na takim etykietowaniu jego wierzchołków, aby każda ścieżka łącząca dwa wierzchołki o tym samym kolorze zawierała wierzchołek o kolorze wyższym. Jeśli każdy wierzchołek posiada dodatkowo listę dozwolonych dla niego etykiet, to mówimy wówczas o uporządkowanym listowym kolorowaniu wierzchołków. W pracy wskazano szereg klas grafów, dla których problem jest trudny: pełne drzewa binarne, drzewa...
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Total chromatic sum for trees
PublikacjaThe total chromatic sum of a graph is the minimum sum of colors (natural numbers) taken over all proper colorings of vertices and edges of a graph. We provide infinite families of trees for which the minimum number of colors to achieve the total chromatic sum is equal to the total chromatic number. We construct infinite families of trees for which these numbers are not equal, disproving the conjecture from 2012.
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Connected searching of weighted trees
PublikacjaW pracy pokazano, że problem spójnego przeszukiwania drzew ważonych jest silnie NP-zupełny. Problem pozostaje trudnym dla drzew z jednym wierzchołkiem o stopniu większym niż 2. Ponadto, przedstawiony został wielomianowy optymalny algorytm dla klasy drzew z ograniczonym stopniem.
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Total restrained domination numbers of trees
PublikacjaOpisane są wszystkie drzewa, w których liczby dominowania totalnego i totalno - powściągniętego są sobie równe, a także podano dolne ograniczenie na liczbę dominowania totalno - powściągniętego w drzewach.
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Reconfiguring Minimum Dominating Sets in Trees
PublikacjaWe provide tight bounds on the diameter of γ-graphs, which are reconfiguration graphs of the minimum dominating sets of a graph G. In particular, we prove that for any tree T of order n ≥ 3, the diameter of its γ-graph is at most n/2 in the single vertex replacement adjacency model, whereas in the slide adjacency model, it is at most 2(n − 1)/3. Our proof is constructive, leading to a simple linear-time algorithm for determining...
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Minimal 2-dominating sets in Trees
PublikacjaWe provide an algorithm for listing all minimal 2-dominating sets of a tree of order n in time O(1.3247^n). This leads to that every tree has at most 1.3247^n minimal 2-dominating sets. We also show that thisbound is tight.
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Properties of the triset metric for phylogenetic trees
Publikacjathe following paper presents a new polynomial time metric for unrootedphylogenetic trees (based on weighted bipartite graphs and the method ofdetermining a minimum perfect matching) and its properties. also many its properties are presented.
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TreeCmp: Comparison of Trees in Polynomial Time
PublikacjaMetryki filogenetyczne umożliwiają ocenę jakości wyników analizy filogenetycznej oraz wiarygodności algorytmów przeprowadzających taką analizę. Aplikacja TreeCmp oferuje efektywne, wielomianowe implementacje ośmiu takich metryk (dla drzew nieukorzenionych i zawierających korzeń) zdefiniowanych dla dowolnych filogenez (nie koniecznie binarnych). Program ten jako pierwszy umożliwia wyznaczanie nowych metryk, definiowanych w oparciu...
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Approximate search strategies for weighted trees
PublikacjaW pracy podajemy 3-przybliżony algorytm dla problemu spójnego przeszukiwania drzew ważonych.
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Minimal double dominating sets in trees
PublikacjaWe provide an algorithm for listing all minimal double dominating sets of a tree of order $n$ in time $\mathcal{O}(1.3248^n)$. This implies that every tree has at most $1.3248^n$ minimal double dominating sets. We also show that this bound is tight.
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Total outer-connected domination in trees
PublikacjaW pracy przedstawiono dolne ograniczenie na liczbę dominowania totalnego zewnętrznie spójnego w grafach oraz scharakteryzowano wszystkie drzewa osiągające to ograniczenie.
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Construction of phylogenetic trees with topological constraints
PublikacjaThis paper proposes a method of reconstruction of phylogenetic trees based on heuristic search with topological constraints. Using topological constraints it is possible to reduce the set of solutions as well as to enforce that the result is consistent with a given hypothesis about the evolution process within some group of species. Along with this work a number of algorithms used for phylogenetic analysis were implemented. Those...
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Rational designing of TiO2-X@Cs3Bi2X9 nanocomposite for boosted hydrogen evolution
PublikacjaHalide perovskites are known as compounds possessing interesting properties, including visible light-induced photoactivity, however, they suffer from instability. Herein, a novel technique for reducing the decomposition rate of halide bismuth-based perovskites Cs3Bi2X9 (X=I, Br, Cl) in the aqueous environment by combining with different types of TiO2 (anatase TiO2-I, anatase/rutile TiO2-B, and rutile TiO2-C synthesized using HI,...
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Fuzzy Gaussian Decision Tree
PublikacjaThe Decision Tree algorithm is one of the first machine learning algorithms developed. It is used both as a standalone model and as an ensemble of many cooperating trees like Random Forest, AdaBoost, Gradient Boosted Trees, or XGBoost. In this work, a new version of the Decision Tree was developed for classifying real-world signals using Gaussian distribution functions and a fuzzy decision process. The research was carried out...
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Total outer-connected domination numbers of trees
PublikacjaNiech G=(V,E) będzie grafem bez wierzchołków izolowanych. Zbiór wierzchołków D nazywamy zbiorem dominującym totalnym zewnętrznie spójnym jeżli każdy wierzchołek grafu ma sąsiada w D oraz podgraf indukowany przez V-D jest grafem spójnym. Moc najmniejszego zbioru D o takich własnościach nazywamy liczbą dominowania totalnego zewnątrznie spójnego. Praca m.in. zawiera dolne ograniczenie na liczbę dominowania totalnego zewnętrznie spójnego...
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Analyzing sets of phylogenetic trees using metrics
PublikacjaThe reconstruction of evolutionary trees is one of the primary objectives in phylogenetics. Such a tree represents historical evolutionary relationships between different species or organisms. Tree comparisons are used for multiple purposes, from unveiling the history of species to deciphering evolutionary associations among organisms and geographical areas. In this paper, we describe a general method for comparing phylogenetictrees...
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The effect of trees in the road crown on road safety
PublikacjaW referacie przedstawiono problem występowania wypadków związanych z najechaniem na drzewo. Problem ten występuje w Polsce głównie w województwach północnych i zachodnich, co jest związane ze specyficznymi cechami sieci drogowej tego obszaru. Referat przedstawia negatywny wpływ drzew rosnących w koronie drogi na bezpieczeństwo ruchu drogowego oraz określa metody zapobiegania wypadkom związanym z najechaniem na drzewo. Ze względu...
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Weakly connected domination stable trees [online]
PublikacjaPraca dotyczy pełnej charakteryzacji drzew stabilnych ze względu na liczbę dominowania słabo spójnego.
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Isolation Number versus Domination Number of Trees
PublikacjaIf G=(VG,EG) is a graph of order n, we call S⊆VG an isolating set if the graph induced by VG−NG[S] contains no edges. The minimum cardinality of an isolating set of G is called the isolation number of G, and it is denoted by ι(G). It is known that ι(G)≤n3 and the bound is sharp. A subset S⊆VG is called dominating in G if NG[S]=VG. The minimum cardinality of a dominating set of G is the domination number, and it is denoted by γ(G)....
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Modeling of event trees for the rapid scenario development
PublikacjaThe paper concerns the safety of ships in abnormal/damage conditions. Some conclusions following from the research associated with development of a method for safety assessment of ships in abnormal/damage conditions is presented in the paper. The method called SSAMADC (Ship Safety Assessment Method in Abnormal/Damage Conditions) is a risk-based method and is connected with application of the quantitative risk assessment QRA approach....
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Trees having many minimal dominating sets
PublikacjaWe provide an algorithm for listing all minimal dominating sets of a tree of order n in time O(1.4656^n). This leads to that every tree has at most 1.4656^n minimal dominating sets. We also give an infinite family of trees of odd and even order for which the number of minimal dominating sets exceeds 1.4167^n, thus exceeding 2^{n/2}. This establishes a lower bound on the running time of an algorithm for listing all minimal dominating...
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Polynomial triset metric for unrooted phylogenetic trees
Publikacjathe following paper presents a polynomial triset metric for unrooted phylogenetic trees (based on weighted bipartite graphs and the method of determining a minimum edge cover) and its basic characteristics. also a list of further directions of research and examples of the wider use of this metric is presented.
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TREE PHYSIOLOGY
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Matching Split Distance for Unrooted Binary Phylogenetic Trees
PublikacjaRekonstrukcja drzew ewolucji jest jednym z głównych celów w bioinformatyce. Drzewa filogenetyczne reprezentuje historię ewolucji i związki pokrewieństwa między różnymi gatunkami. W pracy proponujemy nową ogólną metodę określania odległości między nieukorzenionymi drzewami filogenetycznymi, szczególnie użyteczną dla dużych zbiorów gatunków. Następnie podajemy szczegółowe własności jednej metryki określonej przy użyciu tej metody...
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Edge-chromatic sum of trees and bounded cyclicity graphs
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Matching Split Distance for Unrooted Binary Phylogenetic Trees
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A linear time algorithm for edge coloring of binomial trees
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Why are trees still such a major hazard to drivers in Poland?
PublikacjaRoadside trees are one of Poland's most serious road safety issues. Since 2009 more than 2800 people have been killed as a result of tree collisions; this represents about 15% of all of Poland's accident fatalities between 2009 and 2013. In some of the country's regions striking a tree caused more than 30% of all road accident fatalities. With no proper regulations, guidelines or examples of good practice, roadside environments...
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Visual TreeCmp : Comprehensive Comparison of Phylogenetic Trees on the Web
Publikacja1. We present Visual TreeCmp—a package of applications for comparing phylogenetic tree sets. 2. Visual TreeCmp includes a graphical web interface allowing the visualization of compared trees and command line application extended by comparison methods recently proposed in the literature. 3. The phylogenetic tree similarity analysis in Visual TreeCmp can be performed using eighteen metrics, of which 11 are dedicated to rooted trees...
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Tight bounds on global edge and complete alliances in trees
PublikacjaIn the talk the authors present some tight upper bounds on global edge alliance number and global complete alliance number of trees. Moreover, we present our NP-completeness results from [8] for global edge alliances and global complete alliances on subcubic bipartite graphs without pendant vertices. We discuss also polynomial time exact algorithms for finding the minimum global edge alliance on trees [7] and complete alliance...
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Time versus space trade-offs for randezvous in trees
PublikacjaTwo identical (anonymous) mobile agents start from arbitrary nodes of an unknown tree and have to meet at some node. Agents move in synchronous rounds: in each round an agent can either stay at the current node or move to one of its neighbors. We consider deterministic algorithms for this rendezvous task. The main result of this paper is a tight trade-off between the optimal time of completing rendezvous and the size of memory...
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On trees attaining an upper bound on the total domination number
PublikacjaA total dominating set of a graph G is a set D of vertices of G such that every vertex of G has a neighbor in D. The total domination number of a graph G, denoted by γ_t(G), is the minimum cardinality of a total dominating set of G. Chellali and Haynes [Total and paired-domination numbers of a tree, AKCE International Journal of Graphs and Combinatorics 1 (2004), 69-75] established the following upper bound on the total domination...
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Lossless Compression of Binary Trees with Correlated Vertex Names
PublikacjaCompression schemes for advanced data structures have become the challenge of today. Information theory has traditionally dealt with conventional data such as text, image, or video. In contrast, most data available today is multitype and context-dependent. To meet this challenge, we have recently initiated a systematic study of advanced data structures such as unlabeled graphs [1]. In this paper, we continue this program by considering...
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Approximation Strategies for Generalized Binary Search in Weighted Trees
PublikacjaWe consider the following generalization of the binary search problem. A search strategy is required to locate an unknown target node t in a given tree T. Upon querying a node v of the tree, the strategy receives as a reply an indication of the connected component of T\{v} containing the target t. The cost of querying each node is given by a known non-negative weight function, and the considered objective is to minimize the total...
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Collaborative Exploration of Trees by Energy-Constrained Mobile Robots
PublikacjaWe study the problem of exploration of a tree by mobile agents (robots) that have limited energy. The energy constraint bounds the number of edges that can be traversed by a single agent. We use a team of agents to collectively explore the tree and the objective is to minimize the size of this team. The agents start at a single node, the designated root of the tree and the height of the tree is assumed to be less than the energy...
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Porous silica matrix as an efficient strategy to boosted photocatalytic performance of titania/carbon composite
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New Biocompatible Ti-MOF@hydroxyapatite Composite Boosted with Gentamicin for Postoperative Infection Control
PublikacjaThe standard clinical management of osteomyelitis involves prolonged antibiotic therapy, which frequently necessitates the excision of infected tissues. However, the efficacy of such treatments is increasingly compromised by the rise of antibiotic-resistant pathogens, underscoring an urgent need for innovative approaches. This study introduces a novel composite material designed to offer dual functionality: robust antimicrobial...
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Willingness to Receive the Booster COVID-19 Vaccine Dose in Poland
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Comparing phylogenetic trees using a minimum weight perfect matching
PublikacjaA phylogenetic tree represents historical evolutionary relationshipbetween different species or organisms. There are various methods for reconstructing phylogenetic trees.Applying those techniques usually results in different treesfor the same input data. An important problem is to determinehow distant two trees reconstructed in such a wayare from each other. Comparing phylogenetic trees is alsouseful in mining phylogenetic information...
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Ensemble-Based Logistic Model Trees for Website Phishing Detection
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Trees with equal restrained domination and total restrained domination numbers
PublikacjaW publikacji scharakteryzowano wszystkie drzewa, w których liczby dominowania powściągniętego oraz podwójnie totalnego są sobie równe.
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Enumerations of Plane Trees with Multiple Edges and Raney Lattice Paths
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