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Rok 2006
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Aplikacja wspomagająca przetwarzanie sekwencji dna: moduł edycji chromatogramu
PublikacjaModuł edycji chromatogramu jest częścią większej aplikacji, służącej do wspomagania przetwarzania danych pochodzących z sekwencjonowania DNA. Aplikacja skonstruowana jest z odrębnych, samodzielnych programów, które współpracują dwiema drogami - poprzez popularne formaty plików, co umożliwia wprowadzenie do modułów danych opracowanych częściowo w aplikacjach zewnętrznych, oraz poprzez przesyłanie danych pomiędzy modułami, co usprawnia...
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Approximation strategies for routing edge disjoint paths in complete graphs
PublikacjaPraca dotyczy problemu ścieżek krawędziowo rozłącznych w nieskierowanych grafach pełnych, dla którego podano nowe algorytmy przybliżone: 3.75-przybliżony (model off-line) i 6.47-przybliżony (model on-line). Stosując podobną metodologię, uzyskano algorytm 4.5-przybliżony (off-line) i 6-przybliżony (on-line) dla problemu routingu i kolorowania ścieżek w grafach pełnych.
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Chromatic scheduling of 1- and 2-processor uet tasks on dedicated machines with availability constraints.
PublikacjaRozważono uogólnienie klasycznego szeregowania jednostkowych zadań jedno- i dwuprocesorowych na maszynach dedykowanych. Przyjęty model pozwala na naturalne wprowadzenie wszystkich klasycznych kryteriów optymalizacyjnych dla harmonogramów. Zaproponowano algorytmy wielomianowe dla systemów rzadkich.
Rok 2007
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Application of an online judge & contester system in academic tuition
PublikacjaPraca zawiera opis systemu typu ''Online judge & contester'' o nazwie SPOJ, wykorzystywanego do zdalnej nauki programowania. Został on pomyślnie wdrożony w nauczaniu informatyki na Politechnice Gdańskiej. Omówiono zasadę działania i mechanizmy bezpieczeństwa systemu SPOJ. Przedstawiono wnioski z doświadczeń przy stosowaniu tego typu systemów w nauczaniu na etapie studiów 1. i 2. stopnia w ciągu ostatnich czterech lat.
Rok 2008
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Application of an online judge & contester system in academic tuition
PublikacjaPraca zawiera opis systemu typu ''Online judge & contester'' o nazwie SPOJ, wykorzystywanego do zdalnej nauki programowania. Został on pomyślnie wdrożony w nauczaniu informatyki na Politechnice Gdańskiej. Omówiono zasadę działania i mechanizmy bezpieczeństwa systemu SPOJ. Przedstawiono wnioski z doświadczeń przy stosowaniu tego typu systemów w nauczaniu na etapie studiów 1. i 2. stopnia w ciągu ostatnich czterech lat.
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Compact cyclic edge-colorings of graphs
PublikacjaArtykuł jest poświęcony modelowi zwartego cyklicznego kolorowania krawędzi grafów. Ten wariant kolorowania jest stosowany w modelowaniu uszeregowań w systemach produkcyjnych, w których proces produkcyjny ma charakter cykliczny. W pracy podano konstrukcje grafów, które nie zezwalają na istnienie pokolorowania w rozważanym modelu. Wykazano także kilka własności teoretycznych, takich jak ograniczenia górne na liczbę kolorów w optymalnym...
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Comparing phylogenetic trees using a minimum weight perfect matching
PublikacjaA phylogenetic tree represents historical evolutionary relationshipbetween different species or organisms. There are various methods for reconstructing phylogenetic trees.Applying those techniques usually results in different treesfor the same input data. An important problem is to determinehow distant two trees reconstructed in such a wayare from each other. Comparing phylogenetic trees is alsouseful in mining phylogenetic information...
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Computer experiments with a parallel clonal selection algorithm for the graph coloring problem
PublikacjaArtificial immune systems (AIS) are algorithms that are based on the structure and mechanisms of the vertebrate immune system. Clonal selection is a process that allows lymphocytes to launch a quick response to known pathogens and to adapt to new, previously unencountered ones. This paper presents a parallel island model algorithm based on the clonal selection principles for solving the Graph Coloring Problem. The performance of...
Rok 2010
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Application of Artificial Neural Networks in Investigations of Steam Turbine Cascades
PublikacjaZaprezentowano wyniki badań numerycznych zastosowania sieci neuronowych przy obliczeniach przepływów w palisadach turbin parowych. Na podstawie uzyskanych wyników wykazano, że sieci neuronowe mogą być używane do szacowania przestrzennego rozkładu parametrów przepływu, takich jak entalpia, entropia, ciśnienie czy prędkość czynnika w kanale przepływowym. Omówiono również zastosowania tego typu metod przy projektowaniu palisad, stopni...
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Application of genetic algorithms in graph searching problem
PublikacjaGraph searching is a common approach to solving a problem of capturing a hostile intruder by a group of mobile agents. We assume that this task is performed in environment which we are able to model as a graph G. The question asked is how many agents are needed to capture an arbitrary fast, invisible and smart intruder. This number is called the (edge) search number of G. The strategy which must be performed by agents is called...
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Comparing Arbitrary Unrooted Phylogenetic Trees Using Generalized Matching Split Distance
PublikacjaIn the paper, we describe a method for comparing arbitrary, not necessary fully resolved, unrooted phylogenetic trees. Proposed method is based on finding a minimum weight matching in bipartite graphs and can be regarded as a generalization of well-known Robinson-Foulds distance. We present some properties and advantages of the new distance. We also investigate some properties of presented distance in a common biological problem...
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Comparison of reproduction strategies in genetic algorithm approach to graph searching
Publikacjagenetic algorithms (ga) are a well-known tool used to obtain approximate solutions to optimization problems. successful application of genetic algorithm in solving given problem is largely dependant on selecting appropriate genetic operators. selection, mutation and crossover techniques play a fundamental role in both time needed to obtain results and their accuracy. in this paper we focus on applying genetic algorithms in calculating...
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Connected searching of weighted trees
PublikacjaW artykule rozważamy problem spójnego przeszukiwania drzew obciążonych. Autorzy w [L. Barriere i inni, Capture of an intruder by mobile agents, SPAA'02 (2002) 200-209] twierdzą, że istnieje wielomianowy algorytm dla problemu obliczania optymalnej strategii przeszukiwania obciążonego drzewa. W niniejszej pracy pokazano, że problem ten jest obliczeniowo trudny nawet dla wierzchołkowo-obciążonych drzew (wagi krawędzi równe 1) oraz...
Rok 2022
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Application of Doubly Connected Dominating Sets to Safe Rectangular Smart Grids
PublikacjaSmart grids, together with the Internet of Things, are considered to be the future of the electric energy world. This is possible through a two-way communication between nodes of the grids and computer processing. It is necessary that the communication is easy and safe, and the distance between a point of demand and supply is short, to reduce the electricity loss. All these requirements should be met at the lowest possible cost....
Rok 2016
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Applications of semi-definite optimization in quantum information protocols
PublikacjaThis work is concerned with the issue of applications of the semi-definite programming (SDP) in the field of quantum information sci- ence. Our results of the analysis of certain quantum information protocols using this optimization technique are presented, and an implementation of a relevant numerical tool is introduced. The key method used is NPA discovered by Navascues et al. [Phys. Rev. Lett. 98, 010401 (2007)]. In chapter...
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Bounds on the cover time of parallel rotor walks
PublikacjaThe rotor-router mechanism was introduced as a deterministic alternative to the random walk in undirected graphs. In this model, a set of k identical walkers is deployed in parallel, starting from a chosen subset of nodes, and moving around the graph in synchronous steps. During the process, each node successively propagates walkers visiting it along its outgoing arcs in round-robin fashion, according to a fixed ordering. We consider...
Rok 2012
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Approximate search strategies for weighted trees
PublikacjaW pracy podajemy 3-przybliżony algorytm dla problemu spójnego przeszukiwania drzew ważonych.
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Colorings of the Strong Product of Circulant Graphs
PublikacjaGraph coloring is one of the famous problems in graph theory and it has many applications to information theory. In the paper we present colorings of the strong product of several circulant graphs.
Rok 2009
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Approximating the maximum 2- and 3-edge-colorable subgraph problems
PublikacjaDla ustalonej wartości parametru k>=2, problem maksymalnego podgrafu krawędziowo k-kolorowalnego polega na wskazaniu k rozłącznych skojarzeń w grafie prostym, a kryterium optymalizacji jest maksymalizacja całkowitej liczby użytych krawędzi. W pracy podano algorytmy 5/6- i 4/5-przybliżone odpowiednio dla przypadków k=2 i k=3, poprawiając wyniki znane z literatury.
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Clonal selection in discrete optimization
PublikacjaW rozprawie zajmujemy się efektywnymi metodami przybliżonego rozwiązywania problemów optymalizacji dyskretnej, a w szczególności algorytmami opartymi na metodzie selekcji klonalnej (SK), należącymi do kategorii sztucznych systemów immunologicznych. Techniki optymalizacji to znaczące pole badań w informatyce, a niektóre ze starszych technik, takie jak algorytmy genetyczne, symulowane wyżarzanie czy przeszukiwanie tabu, stały się...
Rok 2024
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Approximation algorithms for job scheduling with block-type conflict graphs
PublikacjaThe problem of scheduling jobs on parallel machines (identical, uniform, or unrelated), under incompatibility relation modeled as a block graph, under the makespan optimality criterion, is considered in this paper. No two jobs that are in the relation (equivalently in the same block) may be scheduled on the same machine in this model. The presented model stems from a well-established line of research combining scheduling theory...
Rok 2017
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Approximation Strategies for Generalized Binary Search in Weighted Trees
PublikacjaWe consider the following generalization of the binary search problem. A search strategy is required to locate an unknown target node t in a given tree T. Upon querying a node v of the tree, the strategy receives as a reply an indication of the connected component of T\{v} containing the target t. The cost of querying each node is given by a known non-negative weight function, and the considered objective is to minimize the total...
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Average distance is submultiplicative and subadditive with respect to the strong product of graphs
PublikacjaWe show that the average distance is submultiplicative and subadditive on the set of non-trivial connected graphs with respect to the strong product. We also give an application of the above-mentioned result.
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Collaborative Delivery by Energy-Sharing Low-Power Mobile Robots
PublikacjaWe study two variants of delivery problems for mobile robots sharing energy. Each mobile robot can store at any given moment at most two units of energy, and whenever two robots are at the same location, they can transfer energy between each other, respecting the maximum capacity. The robots operate in a simple graph and initially each robot has two units of energy. A single edge traversal by an robot reduces its energy by one...
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Collision-free network exploration
PublikacjaMobile agents start at different nodes of an n-node network. The agents synchronously move along the network edges in a collision-free way, i.e., in no round two agents may occupy the same node. An agent has no knowledge of the number and initial positions of other agents. We are looking for the shortest time required to reach a configuration in which each agent has visited all nodes and returned to its starting location. In...
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Comparing Phylogenetic Trees by Matching Nodes Using the Transfer Distance Between Partitions
PublikacjaAbility to quantify dissimilarity of different phylogenetic trees describing the relationship between the same group of taxa is required in various types of phylogenetic studies. For example, such metrics are used to assess the quality of phylogeny construction methods, to define optimization criteria in supertree building algorithms, or to find horizontal gene transfer (HGT) events. Among the set of metrics described so far in...
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Complementarity between entanglement-assisted and quantum distributed random access code
PublikacjaCollaborative communication tasks such as random access codes (RACs) employing quantum resources have manifested great potential in enhancing information processing capabilities beyond the classical limitations. The two quantum variants of RACs, namely, quantum random access code (QRAC) and the entanglement-assisted random access code (EARAC), have demonstrated equal prowess for a number of tasks. However, there do exist specific...
Rok 2003
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Automatyzacja sprawdzania poprawności wnioskowania podczas rozwiązywania zadań obliczeniowych.
PublikacjaW artykule omówiono założenia projektowe i architekturę edukacyjnego systemu informatycznego nadzorującego proces wnioskowania użytkownika podczas rozwiązywania zadań obliczeniowych. Opisywany jest system z bazą wiedzy, w których wiedza o zadaniach z elementarnej matematyki, fizyki lub chemii jest reprezentowana w postaci modeli obliczeniowych, stanowiących szczególny przypadek sieci semantycznych. Scharakteryzowano prototypowy...
Rok 2019
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Better polynomial algorithms for scheduling unit-length jobs with bipartite incompatibility graphs on uniform machines
PublikacjaThe goal of this paper is to explore and to provide tools for the investigation of the problems of unit-length scheduling of incompatible jobs on uniform machines. We present two new algorithms that are a significant improvement over the known algorithms. The first one is Algorithm 2 which is 2-approximate for the problem Qm|p j = 1, G = bisubquartic|Cmax . The second one is Algorithm 3 which is 4-approximate for the problem Qm|p...
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Building a Nest by an Automaton
PublikacjaA robot modeled as a deterministic finite automaton has to build a structure from material available to it. The robot navigates in the infinite oriented grid $Z x Z$. Some cells of the grid are full (contain a brick) and others are empty. The subgraph of the grid induced by full cells, called the {\em field}, is initially connected. The (Manhattan) distance between the farthest cells of the field is called its {\em span}. The robot...
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Clearing directed subgraphs by mobile agents
PublikacjaWe study several problems of clearing subgraphs by mobile agents in digraphs. The agents can move only along directed walks of a digraph and, depending on the variant, their initial positions may be pre-specified. In general, for a given subset S of vertices of a digraph D and a positive integer k, the objective is to determine whether there is a subgraph H=(V,A) of D such that (a) S is a subset of V, (b) H is the union of k directed...
Rok 2015
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Bipartite theory of graphs: outer-independent domination
PublikacjaLet $G = (V,E)$ be a bipartite graph with partite sets $X$ and $Y$. Two vertices of $X$ are $X$-adjacent if they have a common neighbor in $Y$, and they are $X$-independent otherwise. A subset $D \subseteq X$ is an $X$-outer-independent dominating set of $G$ if every vertex of $X \setminus D$ has an $X$-neighbor in $D$, and all vertices of $X \setminus D$ are pairwise $X$-independent. The $X$-outer-independent domination number...
Rok 2021
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Block graphs with large paired domination multisubdivision number
PublikacjaThe paired domination multisubdivision number of a nonempty graph G, denoted by msdpr(G), is the smallest positive integer k such that there exists an edge which must be subdivided k times to increase the paired domination number of G. It is known that msdpr(G) ≤ 4 for all graphs G. We characterize block graphs with msdpr(G) = 4.
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Bortezomib induces methylation changes in neuroblastoma cells that appear to play a significant role in resistance development to this compound
PublikacjaThe anticancer activity of bortezomib (BTZ) has been increasingly studied in a number of indications and promising results for the use of this treatment have been shown in neuroblastoma. As BTZ treatment is usually administered in cycles, the development of resistance and side effects in patients undergoing therapy with BTZ remains a major challenge for the clinical usage of this compound. Common resistance development also means...
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Bounds on isolated scattering number
PublikacjaThe isolated scattering number is a parameter that measures the vulnerability of networks. This measure is bounded by formulas de- pending on the independence number. We present new bounds on the isolated scattering number that can be calculated in polynomial time.
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Bounds on isolated scattering number
PublikacjaThe isolated scattering number is a parameter that measures the vulnerability of networks. This measure is bounded by formulas de- pending on the independence number. We present new bounds on the isolated scattering number that can be calculated in polynomial time.
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Closer Look at the Uncertainty Estimation in Semantic Segmentation under Distributional Shift
PublikacjaWhile recent computer vision algorithms achieve impressive performance on many benchmarks, they lack robustness - presented with an image from a different distribution, (e.g. weather or lighting conditions not considered during training), they may produce an erroneous prediction. Therefore, it is desired that such a model will be able to reliably predict its confidence measure. In this work, uncertainty estimation for the task...
Rok 2020
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Blurred quantum Darwinism across quantum reference frames
PublikacjaQuantum Darwinism describes objectivity of quantum systems via their correlations with their environment--information that hypothetical observers can recover by measuring the environments. However, observations are done with respect to a frame of reference. Here, we take the formalism of [Giacomini, Castro-Ruiz, & Brukner. Nat Commun 10, 494 (2019)], and consider the repercussions on objectivity when changing quantum reference...
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Chromatic cost coloring of weighted bipartite graphs
PublikacjaGiven a graph G and a sequence of color costs C, the Cost Coloring optimization problem consists in finding a coloring of G with the smallest total cost with respect to C. We present an analysis of this problem with respect to weighted bipartite graphs. We specify for which finite sequences of color costs the problem is NP-hard and we present an exact polynomial algorithm for the other finite sequences. These results are then extended...
Rok 2014
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Bounds on the Cover Time of Parallel Rotor Walks
PublikacjaThe rotor-router mechanism was introduced as a deterministic alternative to the random walk in undirected graphs. In this model, a set of k identical walkers is deployed in parallel, starting from a chosen subset of nodes, and moving around the graph in synchronous steps. During the process, each node maintains a cyclic ordering of its outgoing arcs, and successively propagates walkers which visit it along its outgoing arcs in...
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Bounds on the vertex-edge domination number of a tree
PublikacjaA vertex-edge dominating set of a graph $G$ is a set $D$ of vertices of $G$ such that every edge of $G$ is incident with a vertex of $D$ or a vertex adjacent to a vertex of $D$. The vertex-edge domination number of a graph $G$, denoted by $\gamma_{ve}(T)$, is the minimum cardinality of a vertex-edge dominating set of $G$. We prove that for every tree $T$ of order $n \ge 3$ with $l$ leaves and $s$ support vertices we have $(n-l-s+3)/4...
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Brushing with additional cleaning restrictions
PublikacjaIn graph cleaning problems, brushes clean a graph by traversing it subject to certain rules. We consider the process where at each time step, a vertex that has at least as many brushes as incident, contaminated edges, sends brushes down these edges to clean them. Various problems arise, such as determining the minimum number of brushes (called the brush number) that are required to clean the entire graph. Here, we study a new variant...
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Collision-Free Network Exploration
PublikacjaA set of mobile agents is placed at different nodes of a n-node network. The agents synchronously move along the network edges in a collision-free way, i.e., in no round may two agents occupy the same node. In each round, an agent may choose to stay at its currently occupied node or to move to one of its neighbors. An agent has no knowledge of the number and initial positions of other agents. We are looking for the shortest possible...
Rok 2018
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Brief Announcement: Energy Constrained Depth First Search
PublikacjaDepth first search is a natural algorithmic technique for constructing a closed route that visits all vertices of a graph. The length of such route equals, in an edge-weighted tree, twice the total weight of all edges of the tree and this is asymptotically optimal over all exploration strategies. This paper considers a variant of such search strategies where the length of each route is bounded by a positive integer B (e.g. due...
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Collaborative Exploration of Trees by Energy-Constrained Mobile Robots
PublikacjaWe study the problem of exploration of a tree by mobile agents (robots) that have limited energy. The energy constraint bounds the number of edges that can be traversed by a single agent. We use a team of agents to collectively explore the tree and the objective is to minimize the size of this team. The agents start at a single node, the designated root of the tree and the height of the tree is assumed to be less than the energy...
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Computational aspects of greedy partitioning of graphs
PublikacjaIn this paper we consider a variant of graph partitioning consisting in partitioning the vertex set of a graph into the minimum number of sets such that each of them induces a graph in hereditary class of graphs P (the problem is also known as P-coloring). We focus on the computational complexity of several problems related to greedy partitioning. In particular, we show that given a graph G and an integer k deciding if the greedy...
Rok 2013
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Certain family of analytical solutions of nonlinear von Neumann equations
PublikacjaIn this paper we present a slight generalization of certain type of Darboux transformation, that may be used sub-sequently in a convenient way. This method allows to obtain families of solutions of nonlinear von Neumann equations, that are used in particular in DNA modeling.
Rok 2023
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Complexity Issues on of Secondary Domination Number
PublikacjaIn this paper we study the computational complexity issues of the problem of secondary domination (known also as (1, 2)-domination) in several graph classes. We also study the computational complexity of the problem of determining whether the domination and secondary domination numbers are equal. In particular, we study the influence of triangles and vertices of degree 1 on these numbers. Also, an optimal algorithm for finding...
Rok 2002
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Complexity of weak acceptonic conditions in tree automata
PublikacjaRozważano złożoność problemu pustości dla automatów na drzewach ze słabymi warunkami akceptowalności. Rozważano także translacje pomiędzy słabymi i silnymi warunkami akceptowalności.
Rok 2011
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Connected searching of weighted trees
PublikacjaW pracy pokazano, że problem spójnego przeszukiwania drzew ważonych jest silnie NP-zupełny. Problem pozostaje trudnym dla drzew z jednym wierzchołkiem o stopniu większym niż 2. Ponadto, przedstawiony został wielomianowy optymalny algorytm dla klasy drzew z ograniczonym stopniem.