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- Publikacje 1684 wyników po odfiltrowaniu
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Isolation and identification of the restriction endonuclease Ptal fromPhormidium tadzschicicum, an isoschizomer of BspMII
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Targeted DNA oxidation by LSD1–SMAD2/3 primes TGF-β1/ EMT genes for activation or repression
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Endogenous oxidative DNA base modifications analysed with repair enzymes and GC/MS technique
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UNRES server for physics-based coarse-grained simulations and prediction of protein structure, dynamics and thermodynamics
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TspGWI, a thermophilic class-IIS restriction endonuclease from Thermus sp.,recognizes novel asymmetric sequence 5´-ACGGA(N11/9)-3
PublikacjaA novel prototype class-IIS restriction endonuclease, TspGWI, was isolated from the thermophilic bacterium Thermus sp. GW. The recognition sequence and cleavage positions have been established: TspGWI recognizes the non-palindromic 5-bp sequence 5′-ACGGA-3′ and cleaves the DNA 11 and 9 nt downstream in the top and bottom strand, respectively. In addition, an accompanying endonuclease, TspGWII, an isoschizomer of Pst I, was found...
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H2AX phosphorylation, its role in DNA damage response and cancer therapy
PublikacjaDouble-strand breaks (DSBs) are the most deleterious DNA lesions, which, if left unrepaired, may have severe consequences for cell survival, as they lead to chromosome aberrations, genomic instability, or cell death. Various physical, chemical, and biological factors are involved in DSB induction. Cells respond to DNA damage by activating the so-called DNA damage response (DDR), a complex molecular mechanism developed to detect...
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The SERRATE protein is involved in alternative splicing in Arabidopsis thaliana
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The SERRATE protein is involved in alternative splicing in Arabidopsis thaliana
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SERRATE interacts with the nuclear exosome targeting (NEXT) complex to degrade primary miRNA precursors in Arabidopsis
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Molecular dynamics simulations reveal the balance of forces governing the formation of a guanine tetrad—a common structural unit of G-quadruplex DNA
PublikacjaG-quadruplexes (G4) are nucleic acid conformations of guanine-rich sequences, in which guanines are arranged in the square-planar G-tetrads, stacked on one another. G4 motifs form in vivo and are implicated in regulation of such processes as gene expression and chromosome maintenance. The structure and stability of various G4 topologies were determined experimentally; however, the driving forces for their formation are not fully...
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How proteins bind to DNA: target discrimination and dynamic sequence search by the telomeric protein TRF1
PublikacjaTarget search as performed by DNA-binding proteins is a complex process, in which multiple factors contribute to both thermodynamic discrimination of the target sequence from overwhelmingly abundant off-target sites and kinetic acceleration of dynamic sequence interrogation. TRF1, the protein that binds to telomeric tandem repeats, faces an intriguing variant of the search problem where target sites are clustered within short fragments...
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Defining a novel domain that provides an essential contribution to site-specific interaction of Rep protein with DNA
PublikacjaAn essential feature of replication initiation proteins is their ability to bind to DNA. In this work, we describe a new domain that contributes to a replication initiator sequence-specific interaction with DNA. Applying biochemical assays and structure prediction methods coupled with DNA–protein crosslinking, mass spectrometry, and construction and analysis of mutant proteins, we identified that the replication initiator of the...
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DNAffinity: a machine-learning approach to predict DNA binding affinities of transcription factors
PublikacjaWe present a physics-based machine learning approach to predict in vitro transcription factor binding affinities from structural and mechanical DNA properties directly derived from atomistic molecular dynamics simulations. The method is able to predict affinities obtained with techniques as different as uPBM, gcPBM and HT-SELEX with an excellent performance, much better than existing algorithms. Due to its nature, the method can...
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Dorota Wojtowicz-Jankowska dr hab. inż. arch.
OsobyStarszy wykładowca na Wydziale Architektury Politechniki Gdańskiej. W latach 1996 – 2014 pracowała w Katedrze Użyteczności Publicznej, a obecnie jest zatrudniona w Katedrze Projektowania Środowiskowego. W roku 2006 uzyskała tytuł doktora. Od roku 2011 jest członkiem POIA RP. W latach 2014 – 2017 była członkiem Rady Wydziału. W pracy badawczej zajmuje się problematyką związaną z przestrzeniami ekspozycyjnymi. W obszarze jej zainteresowań...
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Non-Linear Interaction of Harmonic Waves in a Quasi-Isentropic Flow of Magnetic Gas
PublikacjaThe diversity of wave modes in the magnetic gas gives rise to a wide variety of nonlinear phenomenaassociated with these modes. We focus on the planar fast and slow magnetosound waves in the geometryof a flow where the wave vector forms an arbitrary angleθwith the equilibrium straight magnetic field.Nonlinear distortions of a modulated signal in the magnetic gas are considered and compared to thatin unmagnetised gas. The case of...
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Validation of lumbar spine finite element model
Dane BadawczeThe functional biomechanics of the lumbar spine have been better understood by finite element method (FEM) simulations. However, there are still areas where the behavior of soft tissues can be better modeled or described in a different way. The purpose of this research is to develop and validate a lumbar spine section intended for biomechanical research....
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Krzysztof Redlarski dr inż.
OsobyKrzysztof Redlarski jest adiunktem w Katedrze Zastosowań Informatyki w Zarządzaniu na Wydziale Zarządzania i Ekonomii Politechniki Gdańskiej. Absolwent Wydziału Elektrotechniki i Automatyki, gdzie ukończył studia magisterskie. W 2013 roku uzyskał stopień naukowy doktora nauk ekonomicznych w zakresie nauk o zarządzaniu. Od początku swojej pracy na Politechnice Gdańskiej jego zainteresowania naukowe skupiają się wokół problematyki...
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Versatility of putative aromatic aminotransferases from Candida albicans.
PublikacjaAmino acids constitute the key sources of nitrogen for growth of Candida albicans. In order to survive inside the host in different and rapidly changing environments, this fungus must be able to adapt via its expression of genes for amino acid metabolism. We analysed the ARO8, ARO9, YER152C, and BNA3 genes with regards to their role in the nutritional flexibility of C. albicans. CaAro8p is undoubtedly the most versatile enzyme...
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Influence of low-temperature physical hardening on stiffness and tensile strength of asphalt concrete and stone mastic asphalt
PublikacjaThis paper presents laboratory testing of stiffness modulus and indirect tensile strength of three asphalt concrete (AC) and three stone mastic asphalt (SMA) mixes after isothermal storage at temperature of -20oC, at different time intervals up to 16 days. The tests under repeated dynamic loading showed physical hardening of all tested mixes which was manifested by an evident increase of their stiffness moduli after isothermal...
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Non-volatile molecular composition and discrimination of single grape white of chardonnay, riesling, sauvignon blanc and silvaner using untargeted GC–MS analysis
PublikacjaThis study developed and applied a GC–MS method aiming at molecular fingerprinting of 120 commercial single grape white wines (Chardonnay, Riesling, Sauvignon Blanc and Silvaner) for possible authentication according to grape variety. The method allowed detection of 372 peaks and tentative identification of 146 metabolites including alcohols, organic acids, esters, amino acids and sugars. The grape variety effect explained 8.3%...
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Excess Gibbs energies and excess molar volumes for binary mixtures: (2-pyr-rolidone+water), (2-pyrrolidone+methanol), and (2-pyrrolidone+ethanol) at the temperature 313.15K
PublikacjaZmierzono całkowite prężności pary oraz zmiany objętości mieszania dla tytułowych układów dwuskładnikowych w temperaturze 313.15K. Rezultaty zostały porównane z wynikami uzyskanymi poprzednio dla pozostałych amidów N-metylofor-mamidu, N,N-dimetyloformamidu oraz N-metyloacetamidu.
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Computer aided machine design 2022/23
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Computer Aided Manufacturing Systems (M:320417W0)
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Teledetekcyjne badanie konstrukcyjnych elementów żelbetowych z użyciem naziemnego skaningu laserowego
PublikacjaWspółczesna technologia naziemnego skaningu laserowego (TLS) z użyciem skanerów geodezyjnych o zasięgu większym niż 50 metrów pozwala na pomiar geometrii elementów konstrukcyjnych z dokładnością bliską 1 mm. Autorzy, w oparciu o badania laboratoryjne i doświadczenia własne, prezentują rozwiązanie pozwalające na wstępną ocenę belek żelbetowych jako podstawowych elementów konstrukcyjnych budowli typu mosty, wiadukty, budynki wielkopowierzchniowe. Przedmiotem...
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Computer Aided Machine Design and Manufacturing (PG_00060425)
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Naval mine detection system based of FPGA circuit
PublikacjaElectrochemical processes take place in a metal object immersed into sea water even if an anticorrosive coating is applied [1]. As a result, flowing field appears around the object. There are naval mines between many other objects situated in the sea. Naval mines can be put in the seabed in order to be more difficult to detect by sonars. Such a mine is located on the line demarking two environments of different electrical conductivity....
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Mathematical Models in Design Process of Ship Bow Thrusters
PublikacjaThe paper describes an application of simulation models for computer-aided design of ship bow thrusters. Generation of simulation models of ship bow thruster requires development and verifying of mathematical models of system component elements. Using the results of simulation the expert system is able to determine, that the rules of classification societies are met. Design procedures and mathematical models are part of an expert...
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Mathematical Models in Design Process of Ship Bow Thrusters
PublikacjaThe presentation is about an application of simulation models for computer-aided design of ship bow thrusters. Generation of simulation models of ship bow thruster requires development and verifying of mathematical models of system component elements. Using the results of simulation the expert system is able to determine, that the rules of classification societies are met. Design procedures and mathematical models are part of an...
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Anna Baj-Rogowska dr
OsobyAnna Baj-Rogowska zatrudniona jest na stanowisku adiunkta w Katedrze Informatyki w Zarządzaniu (Politechnika Gdańska, Wydział Zarządzania i Ekonomii). Jej wyższa edukacja związana jest z Uniwersytetem Gdańskim, gdzie ukończyła magisterskie studia informatyczne, studia doktoranckie i następnie uzyskała stopień naukowy doktora nauk ekonomicznych w zakresie nauk o zarządzaniu (Katedra Informatyki Ekonomicznej na Wydziale Zarządzania...
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Development and validation of lumbar spine finite element model
PublikacjaThe functional biomechanics of the lumbar spine have been better understood by finite element method (FEM) simulations. However, there are still areas where the behavior of soft tissues can be better modeled or described in a different way. The purpose of this research is to develop and validate a lumbar spine section intended for biomechanical research. A FE model of the 50th percentile adult male (AM) Total Human Model for Safety...
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Green products from herbal medicine wastes by subcritical water treatment
PublikacjaHerbal medicine wastes (HMWs) are byproducts of medicine factories, which are mainly landfilled for their environmental problems. Only bearing in mind the contamination and concerns caused by the COVID-19 pandemic and environmental emissions, the worth of herbal medicine wastes management and conversion to green products can be understood. In this work, subcritical water treatment was carried out batch-wise in a stainless tube...
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Effect of particle size of aluminosilicate microspheres on the change of hydration heat of cement mortars and selected physical, chemical, and mechanical properties.
Dane BadawczeThis subject of the work is the study of selected properties of cement mortars containing two fractions of aluminosilicate microspheres with grain size in the range of 125 to 250 μm and from 250 to 500 μm. Mortar mixtures with ordinary Portland cement (OPC 42.5R) and three substitution rates of cement by microspheres, 1.5%, 3.5%, and 5.0%, were investigated....
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Laboratory station for research of the innovative dry method of exhaust gas desulfurization for an engine powered with residual fuel
PublikacjaContemporary methods of exhaust gas desulfurization in marine engines are all expensive methods (4-5 million euro). This is, among other reasons, due to the limited market audience, but primarily due to the monop-olized position of manufacturers offering fabrication and assembly of this type of marine ship installations. Proposed as part of a research project financed by the Regional Fund for Environmental Protection and Maritime...
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Investigations of the Working Process in a Dual-Fuel Low-Emission Combustion Chamber for an FPSO Gas Turbine Engine
PublikacjaThis investigation is devoted to an analysis of the working process in a dual-fuel low-emission combustion chamber for a floating vessel’s gas turbine. The low-emission gas turbine combustion chamber with partial pre-mixing of fuel and air inside the outer and inner radial-axial swirlers was chosen as the object of research. When modelling processes in a dual-flow low-emission gas turbine combustion chamber, a generalized method...
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Functional fluorine-doped tin oxide coating for opto-electrochemical label-free biosensors
PublikacjaSensors operating in multiple domains, such as optical and electrochemical, offer properties making biosensing more effective than those working in a single domain. To combine such domains in one sensing device, materials offering a certain set of properties are required. Fluorine-doped tin oxide (FTO) thin film is discussed in this work as functional optically for guiding lossy modes and simultaneously electrochemically, i.e....
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On the Role of Polarimetric Decomposition and Speckle Filtering Methods for C-Band SAR Wetland Classification Purposes
PublikacjaPrevious wetlands studies have thoroughly verified the usefulness of data from synthetic aperture radar (SAR) sensors in various acquisition modes. However, the effect of the processing parameters in wetland classification remains poorly explored. In this study, we investigated the influence of speckle filters and decomposition methods with different combinations of filter and decomposition windows sizes on classification accuracy....
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Mechanical Properties of Brass under Impact and Perforation Tests for a Wide Range of Temperatures: Experimental and Numerical Approach
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The viscometric evaluation of the gelation rate the chitosan-metal oxide hydrogel systems.
Dane BadawczeThe dataset shows the change in the viscosity of a hydrogel medium over time. Viscometric measurement was used as a universal method for determining the cross-linking rate of chitosan hydrogel using metal oxides or other solutions with a negative net charge. The method was prepared as a method of predicting the kinetics of additive manufacturing using...
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Materiały dla jednowarstwowych ogniw paliwowych
PublikacjaA composite material, which may be further applied as a single layer fuel cell, was synthesizes using solid state synthesis method. Composite consisted of two components. The first was a nanoeramic proton conductor - calcium doped lanthanum niobate. The second one was a nanoceramic semiconductor oxide composed of lithium, nickel and zinc oxides respectively.
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Study of the influence of medium composition on motility and aggregation of recombinant Escherichia coli strain AAEC191A/pCC90 D54-STOP-PBS, PBS+0.2% glucose, PBS+0.5% glucose
Dane BadawczeMicrobial motility is a fundamental aspect of many microbial life cycles and is a key survival mechanism that enables microorganisms to navigate diverse and dynamic environmental conditions. This phenomenon becomes particularly important in response to changes in stimuli in time and space. The following experiment aimed to investigate how the composition...
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Study of the influence of medium composition on motility and aggregation of recombinant Escherichia coli strain BL21(DE3)/pACYCpBAD-PBS, PBS+0.2% glucose, PBS+0.5% glucose
Dane BadawczeMicrobial motility is a fundamental aspect of many microbial life cycles and is a key survival mechanism that enables microorganisms to navigate diverse and dynamic environmental conditions. This phenomenon becomes particularly important in response to changes in stimuli in time and space. The following experiment aimed to investigate how the composition...
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Study of the influence of medium composition on motility and aggregation of recombinant Escherichia coli strain AAEC191A/pCC90 Dra D-mut-PBS, PBS+0.2% glucose, PBS+0.5% glucose
Dane BadawczeMicrobial motility is a fundamental aspect of many microbial life cycles and is a key survival mechanism that enables microorganisms to navigate diverse and dynamic environmental conditions. This phenomenon becomes particularly important in response to changes in stimuli in time and space. The following experiment aimed to investigate how the composition...
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Study of the influence of medium composition on the motility and aggregation of the recombinant Escherichia coli strain AAEC191A/pACYCpBAD-LB, LB+0.2% glucose, LB+0.5% glucose
Dane BadawczeMicrobial motility is a fundamental aspect of many microbial life cycles and is a key survival mechanism that enables microorganisms to navigate diverse and dynamic environmental conditions. This phenomenon becomes particularly important in response to changes in stimuli in time and space. The following experiment aimed to investigate how the composition...
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Study of the influence of medium composition on the motility and aggregation of the recombinant Escherichia coli strain AAEC191A/pACYCpBAD-PBS, PBS+0.2% glucose, PBS+0.5% glucose
Dane BadawczeMicrobial motility is a fundamental aspect of many microbial life cycles and is a key survival mechanism that enables microorganisms to navigate diverse and dynamic environmental conditions. This phenomenon becomes particularly important in response to changes in stimuli in time and space. The following experiment aimed to investigate how the composition...
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Study of the influence of medium composition on motility and aggregation of recombinant Escherichia coli strain BL21(DE3)/pACYCpBAD-LB, LB+0.2% glucose, LB+0.5% glucose
Dane BadawczeMicrobial motility is a fundamental aspect of many microbial life cycles and is a key survival mechanism that enables microorganisms to navigate diverse and dynamic environmental conditions. This phenomenon becomes particularly important in response to changes in stimuli in time and space. The following experiment aimed to investigate how the composition...
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Study of the influence of medium composition on motility and aggregation of recombinant Escherichia coli strain BL21(DE3)/pCC90 Dra D-mut-PBS, PBS+0.2% glucose, PBS+0.5% glucose
Dane BadawczeMicrobial motility is a fundamental aspect of many microbial life cycles and is a key survival mechanism that enables microorganisms to navigate diverse and dynamic environmental conditions. This phenomenon becomes particularly important in response to changes in stimuli in time and space. The following experiment aimed to investigate how the composition...
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Study of the influence of medium composition on motility and aggregation of recombinant Escherichia coli strain AAEC191A/pCC90-LB, LB+0.2% glucose, LB+0.5% glucose
Dane BadawczeMicrobial motility is a fundamental aspect of many microbial life cycles and is a key survival mechanism that enables microorganisms to navigate diverse and dynamic environmental conditions. This phenomenon becomes particularly important in response to changes in stimuli in time and space. The following experiment aimed to investigate how the composition...
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Study of the influence of medium composition on motility and aggregation of recombinant Escherichia coli strain AAEC191A/pCC90 Dra D-mut-LB, LB+0.2% glucose, LB+0.5% glucose
Dane BadawczeMicrobial motility is a fundamental aspect of many microbial life cycles and is a key survival mechanism that enables microorganisms to navigate diverse and dynamic environmental conditions. This phenomenon becomes particularly important in response to changes in stimuli in time and space. The following experiment aimed to investigate how the composition...
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Study of the influence of medium composition on motility and aggregation of recombinant Escherichia coli strain AAEC191A/pCC90 D54-STOP-LB, LB+0.2% glucose, LB+0.5% glucose
Dane BadawczeMicrobial motility is a fundamental aspect of many microbial life cycles and is a key survival mechanism that enables microorganisms to navigate diverse and dynamic environmental conditions. This phenomenon becomes particularly important in response to changes in stimuli in time and space. The following experiment aimed to investigate how the composition...
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Study of the influence of medium composition on motility and aggregation of recombinant Escherichia coli strain BL21(DE3)/pCC90 Dra D-mut-LB, LB+0.2% glucose, LB+0.5% glucose
Dane BadawczeMicrobial motility is a fundamental aspect of many microbial life cycles and is a key survival mechanism that enables microorganisms to navigate diverse and dynamic environmental conditions. This phenomenon becomes particularly important in response to changes in stimuli in time and space. The following experiment aimed to investigate how the composition...