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Potential of Mean Force of Hydrophobic Association: Dependence on Solute Size
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Simple Physics-Based Analytical Formulas for the Potentials of Mean Force for the Interaction of Amino Acid Side Chains in Water. IV. Pairs of Different Hydrophobic Side Chains
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Cloning, expression, and purification of a recombinant cold-adapted β-galactosidase from antarctic bacterium Pseudoalteromonas sp. 22b
PublikacjaAntarktyczny szczep, gram-ujemnych bakterii Pseudoalteromonas sp. 22b, wyizolowanych z przewodu pokarmowego kryla z gatunku Thyssanoessa macrura, jest producentem wewnątrzkomórkowej zimnolubnej beta-galaktozydazy. Białko to jest homotetramerem, w którym każda z jednostek monomeru zbudowana jest z 1028 reszt aminokwasowych. Gen kodujący ten enzym został sklonowany i eksprymowany w komórkach E. coli. Następnie z zastosowaniem procedury...
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Analysis of the possibilities of using of DME fuel in motor boat drive systems
PublikacjaThe characteristics of alternative fuel for diesel: dimethyl ether (DME) and an analysis of the potential to reduce emissions of toxic compounds by the engines when running on this fuel have been presented in this work. Basic types of design solutions of gas supply and control systems, possible for use in internal combustion engines with DME supply have been also presented. The paper presents a study of the legislation and an analysis...
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Improving platelet‐RNA‐based diagnostics: a comparative analysis of machine learning models for cancer detection and multiclass classification
PublikacjaLiquid biopsy demonstrates excellent potential in patient management by providing a minimally invasive and cost-effective approach to detecting and monitoring cancer, even at its early stages. Due to the complexity of liquid biopsy data, machine-learning techniques are increasingly gaining attention in sample analysis, especially for multidimensional data such as RNA expression profiles. Yet, there is no agreement in the community...
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Two-photon induced fluorescence of Cy5-DNA in buffer solution and on silver island film
PublikacjaOpisano fluorescencję barwnika CY5 połączonego z DNA w roztworze buforowym na wysepkach srebrowych.
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One- and two-photon induced fluorescence of Pacific Blue-labeled human serum albumine deposited on different core size silver colloids
PublikacjaPublikacja opisuje jedno i dwufotonowo indukowaną Fluorescencje znakowanej barwnikiem ''Pacific Blue'' ludzkiej albuminy osadzonej na srebrnych koloidach różnych rozmiarów
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Nitrogen speciation in wastewater treatment plant influents and effluents - the US and Polish case studies
PublikacjaW pracy przedstawiono wyniki pomiarów różnych frakcji azotu w dopływachi odpływach z trzech konwencjonalnych oczyszczalni ścieków w stanie Illinois (USA) i czterech wysokoefektywnych oczyszczalni w północnej Polsce. Azot organiczny rozpuszczony był dominującą frakcją (56-95%) azotu ogólnego w odpływach z oczyszczalni amerykańskich, podczas gdy w odpływach z oczyszczalni polskich stanowił mniej istotną frakcję (19-62%). W jednym...
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Nitrogen speciation in wastewater treatment plant influents and effluents - the US and Polish case studies
PublikacjaW pracy badano stężenia rozpuszczonego węgla organicznego i rozpuszczonego azotu organicznego. W badanych oczyszczalniach amerykańskich ta forma azotu stanowiła 56-95% azotu organicznego, podczas gdy w polskich oczyszczalniach udział ten był znacznie niższy i wynosił 19-62%.
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Experimental and model-based evaluation of the role of denitrifying polyphosphate accumulating organisms at two large scale WWTPs in northern Poland
PublikacjaW pracy dokonano oceny zdolności denitryfikacyjnych bakterii fosforowych na przykładzie oczyszczalni ścieków ''Wschód'' w Gdańsku i ''Dębogórze'' w Gdyni. W tym celu wykonano serię testów z wykorzystaniem tzw. reaktora ''wsadowego'', które następnie były modelowane za pomocą modelu ASM2d. Badania wykazały, że tylko 32% bakterii fosforowych posiada zdolność do denitryfikacji. Szybkość denitryfikacji związana z aktywnością bakterii...
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Modeling organic nitrogen conversions in activated sludge bioreactors
PublikacjaFor biological nutrient removal (BNR) systems designed to maximize nitrogen removal, the effluent total nitrogen (TN) concentration may range from 2.0 to 4.0 g N/m3 with about 25-50% in the form of organic nitrogen (ON). In this study, current approaches to modeling organic N conversions (separate processes vs. constant contents of organic fractions) were compared. A new conceptual model of ON conversions was developed and combined...
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An overview of the strategies for the deammonification process start-up and recovery after accidental operational failures
PublikacjaThe deammonification process has been universally acknowledged as an energy-efficient technology for sewage disposal. In contrast with traditional biological nitrogen removal technology, the deammonification process is able to remove ammonia from wastewater with the simplest nitrogen removal process because of its advantages of lower operating expenses, no organic carbon consumption, lower biomass production, lower carbon dioxide...
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Modeling organic nitrogen conversions in activated sludge bioreactors
PublikacjaOpracowano model przemian azotu organicznego (Norg)jako rozszerzenie Modelu Osadu Czynnego Nr 2d (ASM2d). Nowy model zawiera trzy frakcje Norg: rozpuszczoą, koloidalną i zawesinową. Każda frakcja została podzielona na dwie podfrakcje - rozkładalną i nierozkładalną. Model został zweryfikowany w oparciu o wyniki badań eksperymentalnych w oczyszczalni ścieków Gdańsk-Wschód.
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Characteristics and fate of organic nitrogen in municipal biological nutrient removal wastewater treatment plants
PublikacjaThe aim of this study was to investigate the occurrence and fate of colloidal and dissolved organic nitrogen (CON and DON) across biological nutrient removal (BNR) activated sludge bioreactors. Primary and secondary effluent total nitrogen (TN) measurements and component fractionation, CON and DON concentration profiles across BNR bioreactors, and laboratory batch experiments with the process mixed liquor were carried out at several...
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Coupling transformation of carbon, nitrogen and sulfur in a long-term operated full-scale constructed wetland
PublikacjaThe coupling transformation of carbon, nitrogen and sulfur compounds has been studied in lab-scale and pilot-scale constructed wetlands (CWs), but few studies investigated full-scale CW. In this study, we used batch experiments to investigate the potentials of carbon, nitrogen and sulfur transformation in a long-term operated, full-scale horizontal subsurface flow wetland. The sediments collected from the HSFW were incubated for...
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Charakterystyka procesu deamonifikacji oraz rozwój technologii usuwania azotu w oparciu o ten proces
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Identification and characterization of Staphylococcus spp. and their susceptibility to insect apolipophorin III
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Anthelmintics in the Aquatic Environment: A New Analytical Approach
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Graphene oxide aerogels for adsorptive separation of aromatic hydrocarbons and cycloalkanes
PublikacjaEfficient separation of benzene and cyclohexane has critical importance for production of commodity chemicals, and is one of the most challenging separations in the industry. Physisorption by recyclable, porous solids has a significant potential in substituting energy-intensive azeotropic or extractive distillation methods. Reduced graphene oxide aerogels (rGOAs) are emerging materials holding great promise for connecting unique...
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INTERNATIONAL JOURNAL OF INFORMATION TECHNOLOGY & DECISION MAKING
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Make a #GUTchoice Zwiększenie zróżnicowania kulturowego wśród studentów zagranicznych Politechniki Gdańskiej.
ProjektyProjekt realizowany w Centrum Współpracy Międzynarodowej zgodnie z porozumieniem PPI/PZA/2019/1/00133/U/00001 z dnia 2019-11-18
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Pasta Fortified with Potato Juice: Structure, Quality, and Consumer Acceptance
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The geodetic monitoring of the engineering structure – a practical solution of the problem in 3D space
PublikacjaThe study raises the issues concerning the automatic system designed for the monitoring of movement of controlled points, located on the roof covering of the Forest Opera in Sopot. It presents the calculation algorithm proposed by authors. It takes into account the specific design and location of the test object. High forest stand makes it difficult to use distant reference points. Hence the reference points used to study the stability...
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Pre-oxidation of porous ferritic Fe22Cr alloys for lifespan extension at high-temperature
PublikacjaPre-oxidation of porous ferritic Fe22Cr alloys was extensively studied in this paper. Weight gain measurements and SEM analysis revealed that pre-oxidation performed at 900◦C for 40 min increased the lifespan of the alloy. A Cr evaporation study did not disclose any significant influence of the pre-oxidation process on the Cr content in the alloy. For a more detailed assessment, TEM imaging and X-ray tomography measurements of...
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Copper(II) coordination properties of GxG peptides: Key role of side chains of central residues on coordination of formed systems; combined potentiometric and ITC studies
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Electronic States of Tris(bipyridine) Ruthenium(II) Complexes in Neat Solid Films Investigated by Electroabsorption Spectroscopy
PublikacjaWe present the electric field-induced absorption (electroabsorption, EA) spectra of the solid neat films of tris(bipyridine) Ru(II) complexes, which were recently functionalized in our group as photosensitizers in dye-sensitized solar cells, and we compare them with the results obtained for an archetypal [Ru(bpy)3]2+ ion (RBY). We argue that it is difficult to establish a unique set of molecular parameter values by discrete parametrization...
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Deep Learning-Based, Multiclass Approach to Cancer Classification on Liquid Biopsy Data
PublikacjaThe field of cancer diagnostics has been revolutionized by liquid biopsies, which offer a bridge between laboratory research and clinical settings. These tests are less invasive than traditional biopsies and more convenient than routine imaging methods. Liquid biopsies allow studying of tumor-derived markers in bodily fluids, enabling the development of more precise cancer diagnostic tests for screening, disease monitoring, and...
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Design and Synthesis of NTU-9/C3N4 Photocatalysts: Effects of NTU-9 Content and Composite Preparation Method
PublikacjaHybrid materials based on graphitic carbon nitride (g-C3N4) and NTU-9 metal–organic frameworks (MOF) were designed and prepared via solvothermal synthesis and calcination in air. The as-prepared photocatalysts were subsequently characterized using Brunauer–Emmett–Teller (BET) analysis, UV-Vis diffuse reflectance spectroscopy (DRS), photoluminescence (PL) emission spectroscopy, X-ray diffraction (XRD), X-ray photoelectron spectroscopy...
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Simple Physics-Based Analytical Formulas for the Potentials of Mean Force for the Interaction of Amino Acid Side Chains in Water. 3. Calculation and Parameterization of the Potentials of Mean Force of Pairs of Identical Hydrophobic Side Chains
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In vitro and in silico assessment of anti-inflammatory activity of cocoa powders
PublikacjaPlants are considered the major sources of biologically active compounds, which provide unlimited opportunities for their use either as medical treatments or as novel drug formulations. Cocoa powder is frequently used in nutrition and is known to have many benefits thanks to its wide range of biological activities. The presented study was focused on th evaluation of the anti-inflammatory potential of extracts obtained from cocoa...
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Pilicides effectively hinder chaperone-usher interactions in all Gram-negative bacteria
PublikacjaThe chaperone-usher pathway of adhesive structures biogenesis is highly conserved in all Gram-negative bacteria. Pili are polymers of thousands protein subunits that possess conserved immunoglobuline-like structure denoted by lack of the seventh G strand. The effect of this structural defect is a hydrophobic acceptor cleft. The folding of protein subunits is strictly dependent on the action of specific periplasmic chaperone protein...
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Ordinal Pattern Statistics for RR Intervals during Head-Up Tilt Test in Patients with the History of Vasovagal Syncope
PublikacjaWe apply ordinal pattern analysis to quantify differences in distribution of patterns of length 3 and 4 in basal state and during head-up tilt test (HUTT) in patients with the history of syncope and positive (HUTT(+)) or negative (HUTT(-)) responses to the test. We identify the patterns related to prevalence of sympathetic or parasympathetic cardiac modulation as well as describe the relations between the response to the test and...
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Ordinal pattern statistics for the assessment of heart rate variability
PublikacjaThe recognition of all main features of a healthy heart rhythm (the so-called sinus rhythm) is still one of the biggest challenges in contemporary cardiology. Recently the interesting physiological phenomenon of heart rate asymmetry has been observed. This phenomenon is related to unbalanced contributions of heart rate decelerations and accelerations to heart rate variability. In this paper we apply methods based on the concept...
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Facilitated water transport in composite reduced graphene oxide pervaporation membranes for ethanol upgrading
PublikacjaHigh purity ethanol is one of the most sought-after renewable energy sources. However, standard production methods yield ethanol of insufficient quality. Membrane processes such as pervaporation are recognized as a viable method for upgrading ethanol. Their performance and selectivity depend solely on membrane employed. Hydrophilic polyvinyl alcohol (PVA) membranes are used industrially for this purpose, but there is a trade-off...
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Comparison of image pre-processing methods in liver segmentation task
PublikacjaAutomatic liver segmentation of Computed Tomography (CT) images is becoming increasingly important. Although there are many publications in this field there is little explanation why certain pre-processing methods were utilised. This paper presents a comparison of the commonly used approach of Hounsfield Units (HU) windowing, histogram equalisation, and a combination of these methods to try to ascertain what are the differences...
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Distillery Wastes as External Carbon Sources for Denitrification in Municipal Wastewater Treatment Plants
PublikacjaW pracy przedstawiono wyniki badań nad zastosowaniem półproduktów oraz produktów odpadowych z gorzelni i destylarni, jako potencjalne źródło zewnętrznego węgla organicznego w celu poprawy denitryfikacji w systemach z biologicznym usuwaniem związków biogennych. W celu porównania efektywności trzech badanych substancji (oleje fuzlowe, odcieki i syrop) wykonano testy na szybkość redukcji azotanów (z ang. NUR) oraz szybkość zużycia...
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Modeling external carbon addition in combined N-P activated sludge systems with an extension of the IWA Activated Sludge Models
PublikacjaThe aim of this study was to expand the IWA Activated Sludge Model No. 2d (ASM2d) to account for a newly defined readily biodegradable substrate that can be consumed by polyphosphate accumulating organisms (PAOs) under anoxic and aerobic conditions, but not under anaerobic conditions. The model change was to add a new substrate component and process terms for its use by PAOs and other heterotrophic bacteria under anoxic and aerobic...
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Comparison of the Effects of Conventional and Alternative External Carbon Sources for Enhancing of the Denitrification Process
PublikacjaFood industry effluents are considered a potential alternative for methanol when seeking external carbon sources to enhance denitrification in municipal wastewater treatment plants (WWTPs). The aim of this study was to determine the immediate effects of dosing different carbon sources on the denitrification capability of process biomass from the "Wschod" WWTP in Gdansk (northern Poland). Five carbon sources, including settled wastewater,...
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Mathematical modelling of two-step nitrification-denitrification for treatment of sludge digester liquors: influence of nitrite (NO2-N) on the process kinetics
PublikacjaSeparate treatment of the sludge digester liquors is an alternative for expansion of the mainstream treatment line. In order to reduce the oxygen demand for nitrification and organic carbon demand for denitrification, a shortcut in the nitrogen conversion pathway has been promoted in recent years, i.e. nitrification-denitrification via NO2-N instead of NO3-N. Although NO2-N is a common intermediate product of nitrification and...
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Modifications to the anaerobic digestion model no. 1 (ADM1) for enhanced understanding and application of the anaerobic treatment processes – A comprehensive review
PublikacjaAnaerobic digestion (AD) is a promising method for the recovery of resources and energy from organic wastes. Correspondingly, AD modelling has also been developed in recent years. The International Water Association (IWA) Anaerobic Digestion Model No. 1 (ADM1) is currently the most commonly used structured AD model. However, as substrates become more complex and our understanding of the AD mechanism grows, both systematic and specific...
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The metagenomic approach to characterization of the microbial community shift during the long-term cultivation of anammox-enriched granular sludge
PublikacjaA metagenomic approach was used to investigate how the microbial community composition changes when an anammox-based granular sludge reactor is seeded with nitritation-anammox biomass from a wastewater treatment plant. In the seed sample, the abundance of Candidatus Kuenenia stuttgartiensis was similar to Candidatus Jettenia caeni (12.63 vs. 11.68%). This biomass was typical in terms of microbial nitrogen conversion; both ammonia...
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Distillery Wastes as External Carbon Sources for Denitrification in Municipal Wastewater Treatment Plants
PublikacjaW pracy przedstawiono wyniki badań nad zastosowaniem półproduktów oraz produktów odpadowych z gorzelni i destylarni, jako potencjalne źródło zewnętrznego węgla organicznego w celu poprawy denitryfikacji w systemach z biologicznym usuwaniem związków biogennych. W celu porównania efektywności trzech badanych substancji (oleje fuzlowe, odcieki i syrop) wykonano testy na szybkość redukcji azotanów (z ang. NUR) oraz szybkość zużycia...
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Badania kinetyczne procesu denitryfikacji z dawkowaniem zewnętrznego źródła węgla z postaci produktów odpadowych z produkcji alkoholu
PublikacjaCelem badań była ocena możliwości zastosowania produktów odpadowych z produkcji alkoholu (olejów fuzlowych) jako alternatywnych źródeł węgla w procesie denitryfikacji. Dla porównania, w badaniach wykorzystano również ścieki oczyszczone mechanicznie (bez podczyszczania oraz podczyszczone w procesie koagulacji- flokulacji), jak również dwa konwencjonalne zewnętrzne źródła węgla(kwas octowy i etanol). Badania laboratoryjne obejmowały...
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Wspomaganie procesu denitryfikacji substancjami odpadowymi z przemysłu gorzelniczego
PublikacjaW pracy tej oleje fuzlowe, produkt uboczny pozostały z produkcji alkoholu spożywczego w destylarniach i gorzelniach, badano jako alternatywne źródło węgla w stosunku do komercyjnego produktu – etanolu. Z uwagi na fakt, iż węgiel organiczny znacząco wpływa na bakteriocenozę osadu czynnego, struktura mikroorganizmów oraz zróżnicowanie biomasy występującej w rektorach analizowana była za pomocą fluorescencyjnej hybrydyzacji in situ...
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The metabolic activity of denitrifying microorganisms accumulating polyphosphate in response to addition of fusel oil
PublikacjaThe effect of distillery waste product (fusel oil) as an alternative external organic carbon source (EOCS) was investigated in terms of the metabolic properties of denitrifying polyphosphate accumulating organisms (DPAOs). Samples of the non-acclimated biomass were collected from a local full-scale wastewater treatment plant employing A2/O type bioreactors. The acclimated biomass was obtained after cultivation (with fusel oil added)...
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Modelization of Nutrient Removal Processes at a Large WWTP Using a Modified ASM2d Model
PublikacjaThe biodegradation of particulate substrates starts by a hydrolytic stage. Hydrolysis is a slow reaction and usually becomes the rate limiting step of the organic substrates biodegradation. The objective of this work was to evaluate a novel hydrolysis concept based on a modification of the activated sludge model (ASM2d) and to compare it with the original ASM2d model. The hydrolysis concept was developed in order to accurately...
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Modeling nutrient removal and energy consumption in an advanced activated sludge system under uncertainty
PublikacjaActivated sludge models are widely used to simulate, optimize and control performance of wastewater treatment plants (WWTP). For simulation of nutrient removal and energy consumption, kinetic parameters would need to be estimated, which requires an extensive measurement campaign. In this study, a novel methodology is proposed for modeling the performance and energy consumption of a biological nutrient removal activated sludge system...
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Energy and valuable organic products recovery from anaerobic processes
PublikacjaChapter 8 contains: Introduction, Energy balance in wastewater treatment plants and potential energy recovery, Potential valuable products recovery, Anaerobic processes focused on liquid products recovery; Anaerobic digestion (AD) processes focused on gaseous products recovery, Processes enhancing energy and valuable organic products recovery, Conclusions and perspectives. Anaerobic processes offer different pathways for the recovery...
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Model-based identification of the dominant N2O emission pathway in a full-scale activated sludge system
PublikacjaActivated sludge models (ASMs), extended with an N2O emission module, are powerful tools to describe the operation of full-scale wastewater treatment plants (WWTPs). Specifically, such models can investigate the most contributive N2O production pathways and guide towards N2O and carbon footprint (CF) mitigation measures. A common practice is to develop and validate models using data from a single WWTP. In this study, a successfully...
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Single incision laparoscopic surgery – is it time for laboratory skills training?
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