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Wyniki wyszukiwania dla: coarse graining
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Plasmons in AlGaN/GaN grating-gate structure probing with 300 K background illumination
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Asymptotic approximations of lasing eigenvalues of an infinite grating of circular quantum wires in the free space
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The application of the Superpave method of climatic zones analysis in Poland with regard to bitumen performance grading
PublikacjaCurrently in Poland, similarly as in the other EU countries, road bitumens are tested and classified with regard to mainly the penetration value determined at the tempera-ture of 25C. It should be noted that this classification is not correlated with the cli-matic conditions in which the bitumens are to serve in the road pavement. Towards the end of the last century a new system of bitumen grading was developed and im-plemented...
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Local and long range potentials for heparin‐protein systems for coarse‐grained simulations
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Modelling Coarse Particulate Matter PM10 Concentration in the Tricity Area Using GIS
PublikacjaEnvironmental pollution is an issue of global concern, with Particulate Matter (PM) poisoning being a prime cause of lung cancer. This has led the European Commission to establish strict daily and annual PM concentration limits. The monitoring of air quality in major cities is the responsibility of European Member States. The Tricity, a 414.81 km 2 area in northern Poland, is monitored by a network of only 9 stations operated by...
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Investigation of Protein Folding by Coarse-Grained Molecular Dynamics with the UNRES Force Field
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Extension of the UNRES Coarse-Grained Force Field to Membrane Proteins in the Lipid Bilayer
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Effects of Contamination with Gasoline and Diesel Oil on Shear Strength of Coarse Grained Soil
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Experimental and Numerical Analysis of Air Trapping in a Porous Medium with Coarse Textured Inclusions
PublikacjaThe paper presents a 2D upward infiltration experiment performed on a model porous medium consisting of fine sand background with two inclusions made of coarser sands. The purpose of the experiment was to investigate the effects of structural air trapping, which occurs during infiltration as a result of heterogeneous material structure. The experiment shows that a significant amount of air becomes trapped in each of the inclusions. Numerical...
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Modeling protein structures with the coarse-grained UNRES force field in the CASP14 experiment
PublikacjaThe UNited RESidue (UNRES) force field was tested in the 14th Community Wide Experiment on the Critical Assessment of Techniques for Protein Structure Prediction (CASP14), in which larger oligomeric and multimeric targets were present compared to previous editions. Three prediction modes were tested (i) ab initio (the UNRES group), (ii) contact-assisted (the UNRES- contact group), and (iii) template-assisted (the UNRES-template...
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Implementation of Time-Averaged Restraints with UNRES Coarse-Grained Model of Polypeptide Chains
PublikacjaTime-averaged restraints from nuclear magnetic resonance (NMR) measurements have been implemented in the UNRES coarse-grained model of polypeptide chains in order to develop a tool for data-assisted modeling of the conformational ensembles of multistate proteins, intrinsically disordered proteins (IDPs) and proteins with intrinsically disordered regions (IDRs), many of which are essential in cell biology. A numerically stable variant...
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Issues of Measuring the Course of Batch Production Processes
PublikacjaIn order to meet demands induced by development of manufacturing processes and production systems, new criteria and indicators that would allow a multiple aspect and realistic rating of batch production process courses are necessary. The objective of this paper is to present the correlation between production processes measurement, its rating and production control, basing on case study analysis from production enterprise. A new...
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Learning design of a blended course in technical writing
PublikacjaBlending face-to-face classes with e-learning components can lead to a very successful outcome if the blend of approaches, methods, content, space, time, media and activities is carefully structured and approached from both the student’s and the tutor’s perspective. In order to blend synchronous and asynchronous e-learning activities with traditional ones, educators should make them inter-dependent and develop them according to...
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Alternative methods for dark fermentation course analysis
PublikacjaDark fermentation course analysis is crucial, as complexed matrix of gaseous components may be formed and revealed during the process. The paper considers key issues related to the microbiological process in which complex organic substances are transformed into hydrogen. For the purposes of hydrogen generation, the application of wastewater mixed sludge pre-treated according to Faloye method (Faloye et al. in Int J Hydrog Energy...
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Improvement of Attention, Executive Functions, and Processing Speed in Elderly Women as a Result of Involvement in the Nordic Walking Training Program and Vitamin D Supplementation
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Sizes and Shapes of Sea Ice Floes Broken by Waves–A Case Study From the East Antarctic Coast
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A Risk Score for Predicting Long-Term Mortality Following Off-Pump Coronary Artery Bypass Grafting
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Trailing-Edge Separation Control of a NACA 0015 Airfoil Using Dielectric-Barrier-Discharge Plasma Actuators
PublikacjaThis paper presents a part of the works conducted in the Plasmaero European project (task 3.1), where the trailing-edge flow separation of a NACA 0015 airfoil has been controlled using four different dielectric barrier discharge (DBD) actuator types at three institutions across Europe. The results show that it is possible to enhance the aerodynamic performance of aircraft at speeds up to 40 m/s. Dielectric-barrier-discharge vortex...
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Preoperative factors predicting saphenous vein graft occlusion in coronary artery bypass grafting: a multivariate analysis
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Histological evaluation of age-related variations in saphenous vein grafts used for coronary artery bypass grafting
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Grazing of Native Livestock Breeds as a Method of Grassland Protection in Roztocze National Park, Eastern Poland
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Current-driven THz emission from AlGaN/GaN grating gate structures in the magnetic field
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Contribution of the gate leakage current to terahertz detection by asymmetric dual-grating gate HEMT structures
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Grating resonances on periodic arrays of sub-wavelength wires and strips: Historical narrative and possible applications
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Binary Grating of Subwavelength Silver and Quantum Wires as a Photonic-Plasmonic Lasing Platform With Nanoscale Elements
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Mixed electronic-ionic conductivity in transition metal oxide glasses con-taining alkaline ions
PublikacjaOpisano właściwości elektryczne szkieł z tlenkami metali przejściowych zawierających jony metali alkalicznych. Szczególną uwagę zwrócono na typowe zmiany przewodnictwa występujące przy domieszkowaniu tego typu szkieł jonami metali alkalicznych. Porównano przewodnictwo elektryczne szkieł fosforanowo-żelazowych zawierających jony sodu z przewodnictwem szkieł bizmutowo-miedziowych.
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Rediscovering Automatic Detection of Stuttering and Its Subclasses through Machine Learning—The Impact of Changing Deep Model Architecture and Amount of Data in the Training Set
PublikacjaThis work deals with automatically detecting stuttering and its subclasses. An effective classification of stuttering along with its subclasses could find wide application in determining the severity of stuttering by speech therapists, preliminary patient diagnosis, and enabling communication with the previously mentioned voice assistants. The first part of this work provides an overview of examples of classical and deep learning...
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Erratum to: Coarse-grained model of the native cellulose Iα and the transformation pathways to the Iβ allomorph
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Elastic moduli of biological fibers in a coarse-grained model: crystalline cellulose and β-amyloids
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Replica Exchange and Multicanonical Algorithms with the Coarse-Grained United-Residue (UNRES) Force Field
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Robots for Elderly Care: Review, Multi-Criteria Optimization Model and Qualitative Case Study
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Optimization of parallel implementation of UNRES package for coarse‐grained simulations to treat large proteins
PublikacjaWe report major algorithmic improvements of the UNRES package for physics-based coarse-grained simulations of proteins. These include (i) introduction of interaction lists to optimize computations, (ii) transforming the inertia matrix to a pentadiagonal form to reduce computing and memory requirements, (iii) removing explicit angles and dihedral angles from energy expressions and recoding the most time-consuming energy/force terms...
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Multi-GPU UNRES for scalable coarse-grained simulations of very large protein systems
PublikacjaGraphical Processor Units (GPUs) are nowadays widely used in all-atom molecular simulations because of the advantage of efficient partitioning of atom pairs between the kernels to compute the contributions to energy and forces, thus enabling the treatment of very large systems. Extension of time- and size-scale of computations is also sought through the development of coarse-grained (CG) models, in which atoms are merged into extended...
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Secondary Structure in Free and Assisted Modeling of Proteins with the Coarse-Grained UNRES Force Field
PublikacjaSecondary structure is a solid scaffold on which the three-dimensional structure of a protein is built. Therefore, care must be taken to reproduce the secondary structure as accurately as possible in the simulations of protein systems. In this chapter, we summarize the physics-based energy terms that govern secondary-structure formation, the auxiliary restraints on secondary structure derived from bioinformatics and from the experimental...
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Peroxidative metabolism of arachidonic acid in the course of Lyme arthritis
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Designing a ship course controller by applying the adaptivebackstepping method
PublikacjaThe article discusses the problem of designing a proper and efficient adaptive course-keeping control system for a seagoingship based on the adaptive backstepping method. The proposed controller in the design stage takes into account thedynamic properties of the steering gear and the full nonlinear static maneuvering characteristic. The adjustable parametersof the achieved nonlinear control structure were tuned up by using the...
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Elite athletes with COVID-19 — Predictors of the course of disease
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Characteristic of factors influencing the proper course of folliculogenesis in mammals
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An application of blended and collaborative learning in spatial planning course
PublikacjaSpatial Planning is a master course for graduate students of Environmental Engineering. The course is based on assumptions that students’ future work will be connected with spatial planning, and spatial issues will have an influence on their everyday lives. To familiarize students with environmental issues in planning, the teams of students get an assignment to design an urban space, waterfront along a stream. The whole project...
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E-learning course "International comparative studies on SMEs"
PublikacjaProjekt Leonardo da Vinci "International comparative studies and course development on SMEs" został zainspirowany poprzednim projektem LdV "A European Diploma in SME Management". Bazując na poprzednich doświadczeniach projektowych zaproponowano opracowanie struktur dla opisania narodowych systemów małych i średnich przedsiębiorstw (ang. SME Small Media Enterprises) przy wykorzystaniu dostępnych krajowych danych. Udowodniono, że...
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Vascular restenosis in coronary artery bypass grafting might be associated with VEGF-C/VEGFR-3 signaling pathway
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Cytokeratin 8 in venous grafts: A factor of unfavorable long-term prognosis in coronary artery bypass grafting patients
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The role of depressive and anxiety symptoms in the evaluation of cardiac rehabilitation efficacy after coronary artery bypass grafting surgery
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Development of Safirinium dyes for new applications: fluorescent staining of bacteria, human kidney cells, and the horny layer of the epidermis
PublikacjaLow-molecular synthetic fluorophores are convenient tools in bioimaging applications. Several derivatives of Safirinium dyes as well as their reactive N-hydroxysuccinimide (NHS) esters bearing diverse substituents were synthesized and evaluated experimentally in terms of their lipophilicity by means of reverse-phase and immobilized artificial membrane high-performance liquid chromatography. Subsequently, the selected compounds...
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Cardiovascular and Perceptual Responses to Resistance Training with Practical Blood Flow Restriction Induced by a Non-Elastic Band vs. Pneumatic Cuff: A Crossover Randomized Study
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Endurance training upregulates the nitric oxide/soluble guanylyl cyclase/cyclic guanosine 3′,5′-monophosphate pathway in the striatum, midbrain and cerebellum of male rats
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Zastosowanie algorytmu ewolucyjnego do uczenia neuronowego regulatora napięcia generatora synchronicznego. Evolutionary algorithm for training a neural network of synchronous generator voltage controller
PublikacjaNajpopularniejsza metoda uczenia wielowarstwowych sieci neuronowych -metoda wstecznej propagacji błędu - charakteryzuje się słabą efektywnością. Z tego względu podejmowane są próby stosowania innych metod do uczenia sieci. W pracy przedstawiono wyniki uczenia sieci realizującej regulator neuronowy, za pomocą algorytmu ewolucyjnego. Obliczenia symulacyjne potwierdziły dobrą zbieżność algorytmu ewolucyjnego w tym zastosowaniu.
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Sparse autoregressive modeling
PublikacjaIn the paper the comparison of the popular pitch determination (PD) algorithms for thepurpose of elimination of clicks from archive audio signals using sparse autoregressive (SAR)modeling is presented. The SAR signal representation has been widely used in code-excitedlinear prediction (CELP) systems. The appropriate construction of the SAR model is requiredto guarantee model stability. For this reason the signal representation...
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Optical investigations of electrochemical processes using a long-period fiber grating functionalized by indium tin oxide
Publikacjahe growing needs for fast and reliable sensing devices stimulate development of new technological solutions. In this work a new multi-domain sensing method is demonstrated where optical sensing device has been applied to enhance amount of data received during electrochemical analysis. Thin, optically transparent, high-refractive-index, and electrically conductive indium tin oxide (ITO) film was deposited using magnetron sputtering...
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Preliminary Results of Effect of Rotational Grazing of Farmed Red Deer (Cervus elaphus) on the Biochemical Status of Soil
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