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Ultrastructural variability of macrophages in the wall of selected aorto-coronary bypass grafts
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Simulation of Protein Structure and Dynamics with the Coarse-Grained UNRES Force Field
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Theory and Practice of Coarse-Grained Molecular Dynamics of Biologically Important Systems
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Simulation of the Opening and Closing of Hsp70 Chaperones by Coarse-Grained Molecular Dynamics
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GBTX emulator for development and special versions of GBT-based readout chains
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Efficient list cost coloring of vertices and/or edges of some sparse graphs
PublikacjaRozważane jest kolorowanie wierzchołków i krawędzi grafów w modelach klasycznym, totalnym i pseudototalnym z uwzględnieniem dodatkowego ograniczenia w postaci list dostępnych kolorów. Proponujemy wielomianowy algorytm oparty na paradygmacie programowania dynamicznego dla grafów o strukturze drzewa. Wynik ten można uogólnić na grafy o liczbie cyklomatycznej ograniczonej z góry przez dowolnie wybraną stała.
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Unicyclic graphs with equal total and total outer-connected domination numbers
PublikacjaLet G = (V,E) be a graph without an isolated vertex. A set D ⊆ V (G) is a total dominating set if D is dominating and the in- duced subgraph G[D] does not contain an isolated vertex. The total domination number of G is the minimum cardinality of a total domi- nating set of G. A set D ⊆ V (G) is a total outer–connected dominating set if D is total dominating and the induced subgraph G[V (G)−D] is a connected graph. The total outer–connected...
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Urinary Tract Infections of Escherichia coli Strains of Chaperone-Usher System
PublikacjaZakażenia dróg moczowych stanowią bardzo poważny problem zdrowotny i ekonomiczny dotyczący milionów ludzi, każdego roku na całym świecie. Najbardziej rozpowszechnionym czynnikiem etiologicznym tego typu infekcji bakteryjnych, obejmujących górne i dolne drogi moczowe, są szczepy E. coli, reprezentujące około 80% przypadków. Uropatogenne szczepy E. coli produkują kilka czynników urowirulentncyh, które można podzielić na dwa główne...
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Scheduling with precedence constraints: mixed graph coloring in series-parallel graphs.
PublikacjaW pracy rozważono problem kolorowania grafów mieszanych, opisujący zagadnienie szeregowania zadań, w którym zależności czasowe zadań mają charakter częściowego porządku lub wzajemnego wykluczania. Dla przypadku, w którym graf zależności jest szeregowo-równoległy, podano algorytm rozwiązujący problem optymalnie w czasie $O(n^3.376 * log n)$.
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Enzymatic degradation and transport of endothiopeptides into Escherichia coli K12 mutant strains
PublikacjaZbadano transport trzech otrzymanych na drodze syntezy ditiopeptydów do komórek Escherichia coli K12. Ponadto zbadano szybkość hydrolizy tych związków. Wszystkie peptydy są transportowane przez permeazy, natomiast są bardziej oporne na hydrolizę enzymatyczną w stosunku do naturalnych peptydów.
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Coarse-grained simulation - an efficient approach for studying motions of large proteins
PublikacjaOne of the most important challenges in performing Molecular Dynamics (MD) simulations of large protein complexes is to accommodate the model accuracy and the simulation timescale. Hitherto, for the most relevant dynamics of protein aggregates in an explicit aqueous environment, the timescale reachable for the all-atoms simulations is of hundreds of nanoseconds. This range is four to six orders of magnitude smaller than processes...
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Modelling electrical machines using bond graphs for mechatronics system applications.
PublikacjaW artykule przedstawiono modelowanie maszyn elektrycznych metodą grafów wiązań dla potrzeb mechatroniki. Omówiono ogólne założenia modelowania maszyn elektrycznych w ujęciu grafów wiązań, bazującego na modelach wzorcowego sprzężenia transformatorowego i elektromechanicznego. Wykorzystując modele tych sprzężeń przedstawiono w ujęciu grafów wiązań model maszyny indukcyjnej w układzie współrzędnych naturalnych stojana. Model opracowano...
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Modelling of distributed-lumped parameter systems by application of modal bond graphs.
PublikacjaZastosowano metodę transmitancji układów o parametrach rozłożonych oraz dekompozycję modalną do modelowania wybranych układów dynamicznych. Zaproponowane podejście pozwala otrzymać dokładne modele niskiego rzędu w postaci grafów wiązań.
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Global value chains and wages under different wage setting mechanisms
PublikacjaThis study examines whether, and how, differences in wage bargaining schemes shape the relationship between global value chains (GVCs) and the wages of workers while considering both GVC participation and position in GVC. Our dataset is derived from the European Structure of Earnings Survey (SES), containing employee–employer data from 18 European countries, merged with sectoral data from the World Input-Output Database (WIOD)....
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A coarse‐grained approach to NMR ‐data‐assisted modeling of protein structures
PublikacjaThe ESCASA algorithm for analytical estimation of proton positions from coarse-grained geometry developed in our recent work has been implemented in modeling protein structures with the highly coarse-grained UNRES model of polypeptide chains (two sites per residue) and nuclear magnetic resonance (NMR) data. A penalty function with the shape of intersecting gorges was applied to treat ambiguous distance restraints, which automatically...
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Global value chains and labour markets – simultaneous analysis of wages and employment
PublikacjaThis study examines the overall effect of global value chains (GVCs) on wages and labour demand. It exploits the World Input–Output Database to measure GVC involvement via recently developed participation indices (using both backward and forward linkages) and the relative GVC position using three-stage least squares regression. We find that the relative GVC position is negatively correlated with wages and employment and that the...
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Position in global value chains and wages in Central and Eastern European countries
PublikacjaThis paper examines the relationship between the relative position of industries in Global Value Chains (GVC) and wages in 10 Central and Eastern European countries. We combine GVC measures of global import intensity of production, upstreamness and the length of the value chain with micro-data on workers. We find that the wages of Central and Eastern European countries workers are higher when their industry is at the beginning...
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Quantum-correlation breaking channels, broadcasting scenarios, and finite Markov chains
PublikacjaOne of the classical results concerning quantum channels is the characterization of entanglementbreakingchannels [M. Horodecki et al., Rev. Math. Phys 15, 629 (2003)]. We address the questionwhether there exists a similar characterization on the level of quantum correlations which may gobeyond entanglement. The answer is fully affirmative in the case of breaking quantum correlationsdown to the, so called, QC (Quantum-Classical)...
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Tight bounds on the complexity of semi-equitable coloring of cubic and subcubic graphs
PublikacjaWe consider the complexity of semi-equitable k-coloring, k>3, of the vertices of a cubic or subcubic graph G. In particular, we show that, given a n-vertex subcubic graph G, it is NP-complete to obtain a semi-equitable k-coloring of G whose non-equitable color class is of size s if s>n/3, and it is polynomially solvable if s, n/3.
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Mechanical characteristics of welded joints between different stainless steels grades
Publikacjanvestigation of mechanical characteristics of welded joints is one of the most important tasks that allow determining their functional properties. Due to the very high, still rising, cost of some stainless steels it is justified, on economic grounds, welding austenitic stainless steel with steels that are corrosion-resistant like duplex ones. According to forecasts the price of...
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Soft-decision schemes for radar estimation of elevation at low grazing angles
PublikacjaIn modern radars, the problem of estimating elevation angle at low grazing angles is typically solved using superresolution techniques. These techniques often require one to provide an estimate of the number of waveforms impinging the array, which one can accomplish using model selection techniques. In this paper, we investigate the performance of an alternative approach, based on the Bayesian-like model averaging. The Bayesian...
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A note on polynomial algorithm for cost coloring of bipartite graphs with Δ ≤ 4
PublikacjaIn the note we consider vertex coloring of a graph in which each color has an associated cost which is incurred each time the color is assigned to a vertex. The cost of coloring is the sum of costs incurred at each vertex. We show that the minimum cost coloring problem for n-vertex bipartite graph of degree ∆≤4 can be solved in O(n^2) time. This extends Jansen’s result [K.Jansen,The optimum cost chromatic partition problem, in:...
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Equitable coloring of graphs. Recent theoretical results and new practical algorithms
PublikacjaIn this paper we survey recent theoretical results concerning conditions for equitable colorability of some graphs and recent theoretical results concerning the complexity of equitable coloring problem. Next, since the general coloring problem is strongly NP-hard, we report on practical experiments with some efficient polynomial-time algorithms for approximate equitable coloring of general graphs.
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Seasonal and spatial differences in metal and metalloid concentrations in the snow cover of Hansbreen, Svalbard
PublikacjaMetals and metalloids in snow on glaciers, depending on the season of deposition, may come from various sources: local rock dust (erosion of the geological substratum), marine aerosol, local human activity (e.g. fuel combustion, waste incineration) and long-range atmospheric transport. Hansbreen glacier, located close to the Polish Polar Station in Svalbard, is a perfect site to study metals and metalloids: it has complex geological...
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Profile of phenolic compounds and antioxidant activity of organically and conventionally grown black-grain barley genotypes treated with biostimulant
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Effect of boundary, shear rate and grain crushing on shear localization in granular materials within micro-polar hypoplasticity
PublikacjaW artykule przedstawiono wpływ 3 efektów na zachowanie się materiałów granulowanych: warunku brzegowego, prędkości ścinania oraz miażdżenia ziaren. Obliczenia wykonano przy pomocy mikropolarnego prawa hipoplastycznego rozszerzonego o efekt prędkości ścinania i miażdżenia ziaren w oparciu o teorię mechaniki zniszczenia. Szczególna uwagę zwrócono na rozkład lokalizacji odkształceń stycznych.
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An efficient algorithm for mobile guarded guards in simple grids
PublikacjaW pracy rozważono problem strzeżenia ortogonalnych krat dwuwymiarowych przez mobilne straże strzeżone. Podano algorytmy wielomianowe m.in. dla przypadku krat prostych i dla przypadku krat bez przeszkód w kierunku poziomym (pionowym).
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The Ethernet POWERLINK Protocol for smart grids elements integration
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Overview of DC–DC Converters Dedicated to HVdc Grids
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Image Segmentation of MRI image for Brain Tumor Detection
Publikacjathis research work presents a new technique for brain tumor detection by the combination of Watershed algorithm with Fuzzy K-means and Fuzzy C-means (KIFCM) clustering. The MATLAB based proposed simulation model is used to improve the computational simplicity, noise sensitivities, and accuracy rate of segmentation, detection and extraction from MR...
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The association between allostatic load and brain: A systematic review
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Parametric imaging in dynamic glucose metabolism studies in brain
PublikacjaArtykuł analizuje badania dynamiczne 18FDG-PET, które służą do estymacji metabolizmu glukozy w mózgu. Zbadano w nim wpływ zakłóceń na wyznaczanie interesującego nas parametru LCMRGlc.
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Evaluating Asymmetric N-Grams as Spell-Checking Mechanism
PublikacjaTypical approaches to string comparing marks two strings as either different or equal without taking into account any similarity measures. Being able to judge similarity is however required for spelling error corrections, as we want to find the best match for a given word. In this paper we present a bi2quadro-grams method for spelling errors correction. The method proposed uses different n-grams dimension for the source (checked)...
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Pathological brain network activity: memory impairment in epilepsy
PublikacjaOur thinking, memory and cognition in general, relies upon precisely timed interactions among neurons forming brain networks that support cognitive processes. The surgical evaluation of drug-resistant epilepsy using intracranial electrodes provides a unique opportunity to record directly from human brain and to investigate the coordinated activity of cognitive networks. In this issue of Neurology®, Kleen and colleagues1 implicate...
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Cybersecurity and Privacy in Standards for Smart Grids – a Comprehensive Survey
PublikacjaResilient information and communications technologies are a prerequisite for reliable operation of smart grid. In recent years, many standards for the new form of electricity network have been proposed, which results in operators and other smart grid stakeholders having difficulties in finding the documents which can be related to their particular problems. The purpose of this paper is to bring in all smart grid standards that...
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Electrochemistry from first-principles in the grand canonical ensemble
PublikacjaProgress in electrochemical technologies, such as automotive batteries, supercapacitors, and fuel cells, depends greatly on developing improved charged interfaces between electrodes and electrolytes. The rational development of such interfaces can benefit from the atomistic understanding of the materials involved by first-principles quantum mechanical simulations with Density Functional Theory (DFT). However, such simulations are...
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Trans-Risk - An Integrated Method for Risk Management in Transport
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Gran Tour
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Comparison of hydrochemistry and organic compound transport in two non-glaciated high Arctic catchments with a permafrost regime (Bellsund Fjord, Spitsbergen)
PublikacjaAn increase in air temperature related to climate change results in the retreat of glaciers, the degradation of permafrost, and the expansion of glacier-free areas in the polar regions. All these processes lead to changes in the Arctic landscape. They influence the hydrochemistry of streams and rivers fed by glaciers and thawing permafrost. In this study, we examine eighty two water samples from two non-glaciated catchments with...
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Antibiotic resistance in Staphylococcus aureus strains isolated from cows with mastitis in the eastern Poland and analysis of susceptibility of resistant strains to alternative non-antibiotic agents: lysostaphin, nisin and polymyxin B.
PublikacjaThe aim of the studies was analysis of resistance of Staphylococcus aureus isolates from bovine mastitis in eastern part of Poland to a set of 20 antibiotics and three alternative agents: lysostaphin, nisin and polymyxin B. Eighty-six out of 123 examined isolates were susceptible to all of 20 tested antibiotics (70 %). The highest percentage of resistance was observed in the case of β-lactam antibiotics: amoxicillin (n=22, 17.9...
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The computational complexity of the backbone coloring problem for bounded-degree graphs with connected backbones
PublikacjaGiven a graph G, a spanning subgraph H of G and an integer λ>=2, a λ-backbone coloring of G with backbone H is a vertex coloring of G using colors 1, 2, ..., in which the color difference between vertices adjacent in H is greater than or equal to lambda. The backbone coloring problem is to find such a coloring with maximum color that does not exceed a given limit k. In this paper, we study the backbone coloring problem for bounded-degree...
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Quantum-state transfer in spin chains via isolated resonance of terminal spins
PublikacjaWe propose a quantum-state transfer protocol in a spin chain that requires only the control of the spins at the ends of the quantum wire. The protocol is to a large extent insensitive to inhomogeneity caused by local magnetic fields and perturbation of exchange couplings. Moreover, apart from the free evolution regime, it allows one to induce an adiabatic spin transfer, which provides the possibility of performing the transfer...
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Eqiuitable coloring of corona products of cubic graphs is harder than ordinary coloring
PublikacjaA graph is equitably k-colorable if its vertices can be partitioned into k independent sets in such a way that the number of vertices in any two sets differ by at most one. The smallest k for which such a coloring exists is known as the equitable chromatic number of G. In this paper the problem of determinig the equitable coloring number for coronas of cubic graphs is studied. Although the problem of ordinary coloring of coronas...
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Ultrafine grained Mg-1Zn-1Mn-0.3Zr alloy and its corrosion behaviour
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Response of inflammatory cells to biodegradable ultra-fine grained Mg-based composites
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Properties of ultrafine-grained Mg-based composites modified by addition of silver and hydroxyapatite
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Optical properties of a dielectric slab front-loaded with a grating of plasmonic silver nanowires
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The DraC usher in Dr fimbriae biogenesis of uropathogenic E. coli Dr+ strains
PublikacjaBiogeneza fimbrii Dr kodowanych przez operon dra uropatogennych szczepów Escherichia coli (infekcje górnych dróg moczowych) odbywa się na bazie zakonserwowanego systemu sekrecji typu chaperone-usher. Funkcjonowanie powyższego systemu sekrecji opiera się na dwóch komponentach białkowych, periplazmatycznym chaperonie DraB i zewnątrzbłonowym kanale DraC. Białko DraB kontroluje proces składania podjednostek fimbrialnych DraE, natomiast...
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How to meet when you forget: log-space rendezvous in arbitrary graphs
PublikacjaProblem rendezvous został dogłębnie zbadany, zarówno dla agendów anonimowych jak i poetykietowanych. zbadano też problem eksploracji grafu za pomocą agentów mobilnych.
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Equitable and semi-equitable coloring of cubic graphs and its application in batch scheduling
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