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Search results for: dna purine bases
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Flow of liquid in flat gaps of the satellite motor working mechanism
PublicationThe article describes the methodology and results of investigations of the flow of oil and HFA-E emulsion in flat gaps of the working mechanism of a satellite motor. The flow of liquid in those gaps is turbulent and not fully developed. The article presents two methods of modelling this flow. Method I makes use of the Darcy-Weisbach formula, while Method II bases on the assumption that in the variable-length gaps the flow is turbulent...
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Human Factors and Functional Safety Analysis in Designing the Control Rooms of Industrial Hazardous Plants
PublicationIn this work some aspects of human factors and functional safety analysis in designing the control rooms of industrial hazardous plants are presented. The “defence in depth” (D-in-D) concept is outlined. Some designing issues of the alarm system (AS) with regard to human factors to be supported using the human reliability analysis (HRA) are discussed. The AS and decision support system (DSS), when properly designed, would contribute...
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RecA Proteins from Deinococcus geothermalis and Deinococcus murrayi - Cloning, Purification and Biochemical Characterisation
PublicationEscherichia coli RecA plays a crucial role in recombinational processes, the induction of SOS response and mutagenic lesion bypasses. It has also been demonstrated that RecA protein is indispensable when it comes to the reassembly of shattered chromosomes in gamma-irradiated Deinococcus radiodurans, one of the most radiation-resistant organisms known. Moreover, some functional differences between E. coli and D. radiodurans RecA...
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Recombinant !ermostable AP Exonuclease from Thermoanaerobacter tengcongensis: Cloning, Expression, Purification, Properties and PCR Application
PublicationApurinic/apyrimidinic (AP) sites in DNA are considered to be highly mutagenic and must be corrected to preserve genetic integrity, especially at high temperatures. !e gene encoding a homologue of AP exonuclease was cloned from the thermophilic anaerobic bacterium Thermoanaerobacter tengcongensis and transformed into Escherichia coli. The protein product showed high identity (80%) to human Ape1 nuclease, whereas to E. coli exonuclease...
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3d Visualization of Seabed from Multibeam Sonar Records Using TriangularIrregular Mesh. W: [CD-ROM] Forum Acusticum Sevilla 2002. 3rd European Con-gres on Acoustics. XXXIII Spanish Congress on Acoustics-TECNIACUSTICA 2002.European and Japanese Symposium on Acoustics. Sevilla, Spain 16-20 Septem- ber 2002. Madrid: Soc. Espanola de Acustica**2002 vol. 33, [6 s.] 4 rys. bibliogr. 6 poz. ISBN: 84-87985-06-8 Special Issue of the Journal Revista de Acustica, vol.33, ano 2002. Trójwym. wizual.dna mors. z danych pochodz. z echosond wielowiąz. z wykorz.niergul.siat.TIN.
PublicationPrzedstawiono sposób trójwymiarowej wizualizacji dna morskiego przy wyko-rzystaniu siatki nieregularnej (TIN) otrzymanej w wyniku triangularyzacjioraz porównano otrzymane wyniki z rzeczywistymi pomiarami batymetrycznymidna Bałtyku Południowego.
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BUDOWA I AKTYWNOŚĆ BIAŁEK NALEŻĄCYCH DO RODZINY TET
PublicationBiałka należące do rodziny TET (Tet1, Tet2, Tet3) są enzymami wykazującymi aktywność względem 5-metylocytozyny, która jest ważnym markerem epigenetycznym odgrywającym kluczową rolę w trakcie rozwoju organizmu i mającym istotny wpływ na poziom ekspresji genów. Białka TET przekształcają 5-metylocytozynę do 5-hydroksymetylocytozyny, 5-formylocytozyny i 5-karboksylocytozyny w trakcie następujących po sobie trzech reakcji utleniania....
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Towards Knowledge Sharing Oriented Adaptive Control
PublicationIn this paper, we propose a knowledge sharing oriented approach to enable a robot to reuse other robots' knowledge by adapting itself to the inverse dynamics model of the knowledge-sharing robot. The purpose of this work is to remove the heavy fine-tuning procedure required before using a new robot for a task via reusing other robots' knowledge. We use the Neural Knowledge DNA (NK-DNA) to help robots gain empirical knowledge and...
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Przeciwnowotworowe działanie akrydyn
PublicationOdkąd wykazano przeciwbakteryjne i przeciwwirusowe właściwości pochodnych akrydyny podjęto wiele prób modyfikacji chemicznej cząsteczki w celu znalezienia pochodnej charakteryzującej się wysoką aktywnością przeciwnowotworową. Wybór akrydyn jako potencjalnych leków przeciwnowotworowych podyktowany był przede wszystkim udowodnioną zdolnością tych związków do oddziaływania z DNA. W terapii przeciwnowotworowej, ze względu na brak istotnych...
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Photosensitive and pH-dependent activity of pyrazine-functionalized carbazole derivative as promising antifungal and imaging agent
PublicationCarbazole skeleton plays a significant role as a structural scaffold of many pharmacologically active compounds. Pyrazine-functionalized carbazole derivative was constructed by coupling 2-amino-5-bromo-3-methylaminepyrazine (ABMAP) into 3 and 6 positions of the carbazole ring. Multi-experimental methods were used, e.g., potentiometric, spectroscopic (ATR, UV, XRD powder,1H and13C NMR), electrochemical (cyclic voltammetry), and...
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Ontology management in the multi-agent system for the it evaluation
PublicationThe team of researchers at the Gdańsk University of Technology is currently developing a model of the multi-agent system (MAS_IT) that would aid the IT managers to find the most appropriate technology to the goals assumed. The knowledge is to be provided by experts and stored in the facts and rules bases. The responsibility of the verification process-on the input and query stages-is given to the ontology, making it to some extend...
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A new approach of coastal cliff monitoring using Mobile Laser Scanning
PublicationThe article proposes a new approach of coastal cliff monitoring which bases on a new comprehensive monitoring system, being a combination of mobile scanning from the sea with the geotechnical stability analysis. Mobile laser scanning is an innovative solution for 3D data collection which allows the monitored object geometry to be precisely measured, thus providing opportunities for series of analyses contributing to the development...
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Designing Particle Kalman Filter for Dynamic Positioning
PublicationThe article presents a comparative analysis of two variants of the Particle Kalman Filter designed by using two different ship motion models. The first filter bases only on the kinematic model of the ship and can be used in many types of vehicles, regardless of the vehicle dynamics model. The input value to the filter is the noisy position of the ship. The second filter makes use of the kinematic and dynamic models of the moving...
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The Method of a Two-Level Text-Meaning Similarity Approximation of the Customers’ Opinions
PublicationThe method of two-level text-meaning similarity approximation, consisting in the implementation of the classification of the stages of text opinions of customers and identifying their rank quality level was developed. Proposed and proved the significance of major hypotheses, put as the basis of the developed methodology, notably about the significance of suggestions about the existence of analogies between mathematical bases of...
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An approach to constructing genuinely entangled subspaces of maximal dimension
PublicationGenuinely entangled subspaces (GESs) are the class of completely entangled subspaces that contain only genuinely multiparty entangled states. They constitute a particularly useful notion in the theory of entanglement but also have found an application, for instance, in quantum error correction and cryptography. In a recent study (Demianowicz and Augusiak in Phys Rev A 98:012313, 2018), we have shown how GESs can be efficiently...
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3D reconstruction seafloor from side-scan records
PublicationArtykuł przedstawia sposób wykorzystania języka opisu wirtualnej rzeczywistości (VRML) do trójwymiarowej wizualizacji dna morskiego. W szczególności zaprezentowano techniki rekonstrukcji trójwymiarowego obrazu z danych pochodzących z sonaru bocznego.
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Polyp of stomach and duodenum - Female, 50 - Tissue image [9230729557256121]
Open Research DataThis is the histopathological image of STOMACH tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format.
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Neuroendocrine carcinoma, NOS - Male, 81 - Tissue image [5300730025891971]
Open Research DataThis is the histopathological image of STOMACH tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format.
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Neuroendocrine carcinoma, NOS - Male, 81 - Tissue image [5300730025891301]
Open Research DataThis is the histopathological image of STOMACH tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format.
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Neuroendocrine carcinoma, NOS - Male, 81 - Tissue image [5300730025892911]
Open Research DataThis is the histopathological image of STOMACH tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format.
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Topographic AFM imaging of the leaf surface with magnification of details of its morphological structure
Open Research DataTopographic imaging of the leaf surface with magnification of details of its morphological structure. Measurements in semi-contact mode. NTEGRA Prima (NT-MDT) device. NSG 01 probe.
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Virtual Engineering Factory: Creating Experience Base for Industry 4.0
PublicationABSTRACT In recent times, traditional manufacturing is upgrading and adopting Industry 4.0, which supports computerization of manufacturing by round-the-clock connection and communica- tion of engineering objects. Consequently, Decisional DNA- based knowledge representation of manufacturing objects, processes, and system is achieved by virtual engineering objects (VEO), virtual engineering processes (VEP), and virtual engineering...
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Certain family of analytical solutions of nonlinear von Neumann equations
PublicationIn this paper we present a slight generalization of certain type of Darboux transformation, that may be used sub-sequently in a convenient way. This method allows to obtain families of solutions of nonlinear von Neumann equations, that are used in particular in DNA modeling.
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PARP inhibition potentiates the cytotoxic activity of C-1305, a selective inhibitor of topoisomerase II, in human BRCA1-positive breast cancer cells
PublicationTwo cellular proteins encoded by the breast and ovarian cancer type 1 susceptibility (BRCA1 and BRCA2) tumor suppressor genes are essential for DNA integrity and the maintenance of genomic stability.Approximately 5-10% of breast and ovarian cancers result from inherited alterations or mutations in these genes.Remarkably, BRCA1/BRCA2-deficient cells are hypersensitive to selective inhibition of poly(ADPribose) polymerase 1 (PARP-1),...
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Decomposition of halogenated nucleobases by surface plasmon resonance excitation of gold nanoparticles
PublicationHalogenated uracil derivatives are of great interest in modern cancer therapy, either as chemotherapeutics or radiosensitisers depending on their halogen atom. This work applies UV-Vis spectroscopy to study the radiation damage of uracil, 5-bromouracil and 5- uorouracil dissolved in water in the presence of gold nanoparticles upon irradiation with an Nd:YAG ns-pulsed laser operating at 532nm at dierent uences. Gold nanoparticles...
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Typing of Candida isolates from patients with invasive infection and concomitant colonization
PublicationWe investigated the relationship between colonizing and invasive isolates from patients with candidaemia. Molecular typing was performed using random amplification of polymorphic DNA (RAPD) and multilocus sequence typing (MLST). We found MLST to be sufficient for typing Candida isolates, and that surveillance cultures are helpful in predicting concomitant invasive isolates, but not necessarily the pathogen involved in subsequent...
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Zakażenia bakteryjne w przewlekłym zapaleniu ucha środkowego - ocena przydatności diagnostyki molekularnej opartej o technikę PCR. Bacterial infection in chronic otitis media - assessment of usefulness of molecular diagnostic based in PCR method.
PublicationIdentyfikacja zakażeń w przewlekłym zapaleniu ucha środkowego jest trudna, o czym świadczą wysokie odsetki ujemnych wyników badań bakteriologicznych. Przyczyną tego jest trudność w uzyskiwaniu wiarygodnego materiału do badań oraz stosunkowo niska czułość klasycznych metod diagnostycznych. Amplifikacja bakteryjnego DNA techniką PCR jest badaniem, które może przyczynić się do zwiększenia efektywności i czułości badań bakteriologicznych....
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Targeting shelterin proteins for cancer therapy.
PublicationAs a global health challenge, cancer prompts continuous exploration for innovative therapies that are also based on new targets. One promising avenue is targeting the shelterin protein complex, a safeguard for telomeres crucial in preventing DNA damage. The role of shelterin in modulating ataxia- telangiectasia mutated (ATM) and ataxia-telangiectasia and Rad3-related (ATR) kinases, key players in the DNA damage response (DDR),...
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ZzP - Biotechnologia wokól nas - Spotkanie Akademickie 17.04.2021 r.
e-Learning CoursesSpotkanie akademickie poświęcone będzie mikroorganizmom, które tak naprawdę są wszędzie. Nie widzimy ich gołym okiem, ale nawet bez oglądania możemy poznać ich niektóre, ważne dla nas cechy. Musimy tylko umieć je wyhodować, co wbrew pozorom, w przypadku większości gatunków mikroorganizmów, nie jest łatwe. Jednym z istotniejszych etapów pracy biologa molekularnego jest możliwość izolacji DNA danego organizmu, dlatego podczas zajęć...
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ZzP - Mikroorganizmy wśród nas - Spotkanie Akademickie 14.11.2020 r.
e-Learning CoursesSpotkanie akademickie poświęcone będzie mikroorganizmom, które tak naprawdę są wszędzie. Nie widzimy ich gołym okiem, ale nawet bez oglądania możemy poznać ich niektóre, ważne dla nas cechy. Musimy tylko umieć je wyhodować, co wbrew pozorom, w przypadku większości gatunków mikroorganizmów, nie jest łatwe. Jednym z istotniejszych etapów pracy biologa molekularnego jest możliwość izolacji DNA danego organizmu, dlatego podczas zajęć...
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Parametric versus nonparametric modelling of dynamic susceptibility contrast enhanced MRI based data
PublicationDynamic tracking of a bolus of a paramagnetic agent (dynamic susceptibility contract - DSC) in MRI (magnetic resonance imaging) measurements is successfully used for assessment of the tissue perfusion and the other features and functions of the brain (i.e. cerebral blood flow - CBF, cerebral blood volume - CBV, mean transit time - MTT). The parametric and nonparametric approaches to the identification of MRI models are presented...
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Information Retrieval with the Use of Music Clustering by Directions Algorithm
PublicationThis paper introduces the Music Clustering by Directions (MCBD) algorithm. The algorithm is designed to support users of query by humming systems in formulating queries. This kind of systems makes it possible to retrieve songs and tunes on the basis of a melody recorded by the user. The Music Clustering by Directions algorithm is a kind of an interactive query expansion method. On the basis of query, the algorithm provides suggestions...
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The usage of the openBIM idea in architectural design on the example of Blender and BlenderBIM add-on
PublicationThe aim of the article is the research about the method and advancement of the openBIM idea implementation, clearly defined by the buildingSMART organization. The conducted analysis are limited to the Blender program and the BlenderBIM add-on and has been embedded in the context of the work of an architect and other IT solutions. The article presents four aspects of the openBIM concept implementation. The first approach relates...
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"Shadow" method application within endoscopic examinations of marine engines
PublicationThe paper deals with diagnostic issues concerning endoscopic examinations of the working spaces within marine diesel and gas turbine engines. In the beginning, the endoscopy apparatus being on the laboratory equipment of the Department of Ship Power Plants of Gdansk University of Technology in Poland has been characterized. The endoscopy considerations have been focused on theoretical bases of a digital image processing and especially...
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"Shadow" method application within endoscopic examinations of marine engines
PublicationThe paper deals with diagnostic issues concerning endoscopic examinations of the working spaces within marine diesel and gas turbine engines. In the beginning, the endoscopy apparatus being on the laboratory equipment of the Department of Ship Power Plants of Gdansk University of Technology in Poland has been characterized. The endoscopy considerations have been focused on theoretical bases of a digital image processing and especially...
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Badania skuteczności ochrony katodowej nóg platformy wydobywczej
PublicationWykonano badania potencjałowe parametrów ochrony platformy wydobywczej Baltic Beta. Stwierdzono występowanie pełnej ochrony katodowej w rejonie dna. Stan techniczny anod wykazuje znaczne zużycie, jednakże w dalszym ciągu realizują proces ochorny
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Molecular Strategy for Survival at a Critical High Temperature in Eschierichia coli
PublicationThe molecular mechanism supporting survival at a critical high temperature (CHT) in Escherichia coli was investigated. Genome-wide screening with a single-gene knockout library provided a list of genes indispensable for growth at 47°C, called thermotolerant genes. Genes for which expression was affected by exposure to CHT were identified by DNA chip analysis. Unexpectedly, the former contents did not overlap with the latter except...
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Biochemical, Structural Analysis, and Docking Studies of Spiropyrazoline Derivatives
PublicationIn this study, we evaluated the antiproliferative potential, DNA damage, crystal struc‐ tures, and docking calculation of two spiropyrazoline derivatives. The main focus of the research was to evaluate the antiproliferative potential of synthesized compounds towards eight cancer cell lines. Compound I demonstrated promising antiproliferative properties, especially toward the HL60 cell line, for which IC50 was equal to 9.4 μM/L....
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New, fast and cheap prediction tests for BRCA1 gene mutations identification in clinical samples.
PublicationDespite significant progress in cancer therapy, cancer is still the second cause of mortality in the world. The necessity to make quick therapeutic decisions forces the development of procedures allowing to obtain a reliable result in a quick and unambiguous manner. Currently, detecting predictive mutations, including BRCA1, is the basis for effectively treating advanced breast cancer. Here, we present new insight on gene mutation...
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Jacek Chróścielewski prof. dr hab. inż.
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Szczepionki przeciw toksoplazmozie - aktualny stan badań
PublicationArtykuł prezentuje współczesną wiedzę na temat opracowywania skutecznej szczepionki przeciwko toksoplazmozie. W publikacji zebrane zostały informacje dotyczące nowych strategii w konstruowaniu efektywnych szczepionek opartych na antygenach natywnych, rekombinantowych, DNA lub RNA pasożyta.
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The influence of fresh cabbage and sauerkraut juices on the activity of protective enzymes in human cell lines
PublicationMechanizmami przeciwrakotwórczego działania związków zawartych w kapuście jest m.in. metaboliczna aktywacja enzymów II fazy detoksykacji, indukcja enzymów naprawczych DNA oraz aktywnośc przeciwutleniająca. Do enzymów II fazy odtruwania należą m.in. S-transferazy glutationowe (GST) oraz oksydoreduktaza chinonowa NQO1 zwana też DT-diaforazą. GST katalizują reakcję sprzęgania glutationu z wieloma różnymi typami ksenobiotyków, ułatwiając...
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Interactions of dissolved dsDNA with intercalating drug by anodic voltammetry and spectroscopy. Influence of pH
PublicationOddziaływanie związku przeciwnowotworowego C-1305 z DNA było badane przy pomocy impulsowej voltametrii różnicowej oraz spektroskopii UV/Vis. Triazoloakrydon C-1305 oddziałuje z DNA na dwóch drogach: przez interkalacje pomiedzy pary zasad oraz przez wiązanie sie w małym rowku helisy. W fizjologicznym pH (7,4) stałe wiązania wynoszą: K1=3,36E+5 i K2=0,18E+5 [1/M] a wielkość miejsca wiązania: n1=2,5 i n2=4,0, odpowiednio dla pierwszego...
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The use of a one-step PCR method for the identification of Microsporum canis and Trichophyton mentagrophytes infection of pets
PublicationIntroduction: Dermatophytes are a closely related group of keratinophilic fungi. They encompass important etiological agents of superficial fungal infections. These fungi are able to invade keratinized tissues of humans and animals, causing dermatophytosis (ringworm) of hair, nails or skin. The aim: Traditional diagnostics of ringworm is based on morphological identification of cultured fungi and is time-consuming. Materials and methods:...
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Numeryczny model terenu dla studium wykonalności inwestycji
PublicationAutorzy prezentują możliwość pozyskania numerycznego modelu terenu (lądu i dna morskiego) w oparciu o korelację pomiarów fotogrametrycznych i batymetrycznych. Prezentują autorskie opracowanie geoinformatyczne połączone z wdrożeniem na przykładzie wybranej inwestycji w strefie brzegowej Morza Bałtyckiego.
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Extended Reflexive Ontologies for the Generation of Clinical Recommendations
PublicationDecision recommendations are a set of alternative options for clinical decisions (e.g., diagnosis, prognosis, treatment selection, follow-up, and prevention) that are provided to decision makers by knowledge-based Clinical Decision Support Systems (k-CDSS) as aids. We propose to follow a ‘‘reasoning over domain’’ approach for the generation of decision recommendations by gathering and inferring conclusions from production rules....
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Synthesis and polymerisation techniques of molecularly imprinted polymers
PublicationMolecularly Imprinted Polymers (MIPs) are materials that has been processed using the molecular imprinting technique which permit to obtain well-defined three-dimensional cavities, with affinity to a template molecule, in the polymer matrix. Technology involves three strategies, i.e., covalent, non-covalent and semi-covalent approach, but the most popular is non-covalent approach. The most important components for the synthesis...
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Listening to Live Music: Life beyond Music Recommendation Systems
PublicationThis paper presents first a short review on music recommendation systems based on social collaborative filtering. A dictionary of terms related to music recommendation systems, such as music information retrieval (MIR), Query-by-Example (QBE), Query-by-Category (QBC), music content, music annotating, music tagging, bridging the semantic gap in music domain, etc. is introduced. Bases of music recommender systems are shortly presented,...
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Seismic pounding between adjacent buildings: Identification of parameters, soil interaction issues and mitigation measures
PublicationStructural pounding has been observed in many previous earthquakes due to insufficient gap commonly provided between adjacent structures. The collisions usually generate large impact forces and short duration acceleration pulses which may result in significant damage to the colliding buildings. Because of that, earthquake induced structural pounding has been intensively studied and investigated for the last three decades. Results...
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Call processing performance in multidomain IMS/NGN architecture
PublicationThe Next Generation Network (NGN) architecture, which bases on the IP Multimedia Subsystem (IMS) concept, is a proposition of a telecommunication network dedicated to the needs of the modern information society. The main goal of NGN is to provide Quality of Service (QoS), for which proper network design and dimensioning are necessary. This also requires appropriate traffic models, which should be efficient and not excessively complicated...
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Cultural Heritage in Spatial Planning
PublicationThe cultural heritage objects of each country should have a major impact on the development of space. Unfortunately, most often the investment needs prevail and only the most precious historical objects are protected. Thus often a monument is preserved, but its surroundings (which put it in context) are lost forever. This article addressed the issues of cultural heritage in relation to the spatial planning system in Poland. The...