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Search results for: molecular dynamic simulation
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Simulation of the derecho event in Poland of 11th August 2017 using the WRF model and GDAS data as initial conditions
Open Research DataThis series contains datasets related to the forecasting of a severe weather event, a derecho, in Poland on 11 August 2017. The simulations were conducted using the Weather Research and Forecasting (WRF) model version 4.2.1 with initial and boundary conditions from Global Data Assimilation System (GDAS). Simulation was performed for two starting hours:...
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Simulation of the derecho event in Poland of 11th August 2017 using the WRF model and ECMWF data as initial conditions
Open Research DataThis series contains datasets related to the forecasting of a severe weather event, a derecho, in Poland on 11 August 2017. The simulations were conducted using the Weather Research and Forecasting (WRF) model version 4.2.1 with initial and boundary conditions from European Centre for Medium-Range Weather Forecasts (ECMWF). Simulation was performed...
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Conformational studies of [Nphe5]SFTI-1 by means of 2D NMR spectroscopy in conjunction with molecular dynamics calculations
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Intramolecular transformation of an antifungal antibiotic nystatin A1 into its isomer, iso-nystatin A1 - structural and molecular modeling studies
PublicationNystatin A1, a polyene macrolide antifungal antibiotic, in a slightly basic or acidic solution undergoes an intramolecular transformation, yielding a structural isomer, the translactonization product, iso-nystatin A1 with lactone ring diminished by two carbon atoms. Structural evidence is provided by advanced NMR and Mass Spectrometry (MS) studies. Molecular dynamics simulations and quantum mechanics calculations gave the insight...
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Operation of the Hybrid Photovoltaic-Battery System on the Electricity Market—Simulation, Real-Time Tests and Cost Analysis
PublicationThis paper presents research on a hybrid photovoltaic-battery energy storage system, declaring its hourly production levels as a member of a balancing group submitting common scheduling unit to the day-ahead market. It also discusses the variability of photovoltaic system generation and energy storage response. The major research questions were whether the operation of a hybrid photovoltaic-battery energy storage system is viable...
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Differential Quadrature Method for Dynamic Buckling of Graphene Sheet Coupled by a Viscoelastic Medium Using Neperian Frequency Based on Nonlocal Elasticity Theory
PublicationIn the present study, the dynamic buckling of the graphene sheet coupled by a viscoelastic matrix was studied. In light of the simplicity of Eringen's non-local continuum theory to considering the nanoscale influences, this theory was employed. Equations of motion and boundary conditions were obtained using Mindlin plate theory by taking nonlinear strains of von Kármán and Hamilton's principle into account. On the other hand, a...
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Molecular Catalysis
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Fatigue resistance investigation of the IC engine MB11 bearings, working under conditions of dynamic unidirectional loadings
PublicationThe slide bearing material MB11 fatigue resistance has been investigated with the application of SMOK - test stand in which dynamic unidirectional loadings to the test bearing is generated. Slide bearing layer consists of the bronze MB11 ( Cu Pb22 Sn 3 ) sintered to the steel shell. Each of the tested bearing has been subject to the standard 20-hour test, under conditions of the full fluid lubrication. Methodology of the experiments,...
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Simulation of the profile wear of the tool in double wheel lapping
PublicationW pracy przedstawiono model zużycia narzędzia w docieraniu dwutarczowym. Wyprowadzono równania opisujące kontakt przedmiotu z narzędziem. Przedstawiono wyniki analiz symulacyjnych dla różnych parametrów kinematycznych - dla układu współbieżnego i przeciwbieżnego.
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Model and laboratory simulation of a induction motor for diagnostic purposes
PublicationStatistics say that bearings are this part of induction motors which is most susceptible to damage. The equipment employed for bearing diagnostics usually makes use of vibrations as the criterion for technical condition of the bearings. A faulty bearing results in additional motor vibrations. They are reflected in the harmonic content of stator currents. In certain operating conditions the current signal is the sole source of information...
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Simulation of the conformational flexibility of the mycodextran under external forces
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Simulation of Force Spectroscopy Experiments on Galacturonic Acid Oligomers
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Simulation of temperature field in cylindrical boiling heating section
PublicationW pracy przedstawiono wyniki obliczeń cylindrycznej sekcji grzejnej. Biorąc pod uwagę geometrię i konstrukcję sekcji grzejnej zaprezentowano rozwiązania pola temperatury dla cylindrycznej sekcji grzejenej. W uzyskaniu rozwiązania posłużono się metodą elementów skończonych.
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Modelling the set of earthworks machinery with the use of computer simulation
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Dynamics of Opposing Polymer Brushes: A Computer Simulation Study
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Computer simulation of induction heating system with series inverter
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Computer simulation of induction hardening of moving flat charge
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Mathematical Modelling and Computer Simulation of Activated Sludge Systems
PublicationPrzegląd systemów osadu czynnego. Rozwój modeli procesu osadu czynnego. Podstawowe definicje z zakresu modelowania matematycznego i symulacji komputerowej. Proces budowy modelu (model biokinetyczny, hydrodynamiczny, transferu tlenu, temperatury). Modelowanie procesów biochemicznych zachodzących w systemach osadu czynnego. Organizacja badań symulacyjnych. Praktyczne zastosowania modeli osadu czynnego.
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Modeling and Simulation of Electric Motors Using Lightweight Materials
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Thermal simulation of building performance with different loadbearing materials
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Selected aspects of heat recovery simulation in houseboat installations
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Conditional simulation of spatiotemporal random fields of environmental contamination
PublicationArtykuł przedstawia metodę warunkowego modelowania przestrzenno-czasowych pól losowych w zagadnieniach środowiska naturalnego. Metoda ta może być wykorzystana do prognozy zanieczyszczenia w wybranych punktach w danym czasie na podstawie pomiarów wykonanych w innych miejscach i/lub w innym czasie. Analizę przeprowadzono na przykładzie zanieczyszczenia gruntu metalami ciężkimi.
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Hardware-in-the-loop simulation of the synchronization process of power generators
PublicationPrzedstawiono nowoczesne urządzenia do badań synchronizatorów automatycznych w warunkach laboratoryjnych. Szczególną uwagę poświęcono systemowi wizualizacji tych urządzeń )przy ich pomocymożliwa jest ciągła kontrola, sterowanie i wizualizacja procesem synchronizacji w systemie elektroenergetycznym.
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Shell with random geometric imperfections simulation-based approach
PublicationPrzedstawiono analizę powłok z losowymi imperfekcjami. Zastosowano nieliniowe geometrycznie i materiałowo modele. Geometryczne imperfekcje opisano za pomocą pojedynczych zmiennych oraz pól losowych. Wykorzystano metodę Monte Carlo i metodę elementów skończonych. Zbadano wpływ różnych rozkładów prawdopodobieństwa imperfekcji geometrycznych na probabilistyczny rozkład nośności granicznej powłok. Zastosowane rozkłady ekstremalne imperfekcji...
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Informational entropy in simulation of one-dimensional random fields
PublicationEntropia ciągłego rozkładu prawdopodobieństwa jest zdefiniowana jako funkcja liczby węzłów skalarnego pola losowego. W przykładzie numerycznym przedstawiono propagacje entropii w zagadnieniu reakcji sprężystego wspornika przy losowym obciążeniu.
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Simulation of the profile wear of the tool in double wheel lapping
PublicationPrzedstawiono założenia modelowe do wyznaczenia zużycia profilowego narzędzia w docieraniu dwutarczowym. Rozkłady istotnych czynników kinematycznych (prędkości docierania i przyspieszenia stycznego) wpływających na zużycie docieraka zaprezentowane zostały dla różnych typów zakreślanych trajektorii.
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Planning and simulation studies of cellular-type manufacturing processes
PublicationZaproponowano metodę i algorytmy projektowania struktur organizacyjnych systemów wytwarzania typu gniazdowego, z wykorzystaniem zdefiniowanych modeli zapisu wiedzy technologicznej i zasad grupowej obróbki przedmiotów. Wyznaczono wskaźniki efektywności procesu grupowego przebiegającego w systemach gniazdowych z rozmieszczeniem komórkowym oraz funkcjonalnym stanowisk wg przyjętych formuł analitycznych. Zawarto wyniki zrealizowanych...
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Simulation and discretization of random field in the slip line method.
PublicationW pracy rozpatrywany jest problem nośności granicznej podłoża o własnościach stochastycznych przy obciążeniu spoczywającym na nim ciężkim sztywnym bloku.Opisano sposób generacji wielowymiarowego pola losowego oparty na diagonalizacji macierzy kowariancji przy wykorzystaniu macierzy dolnotrójkątnej .Szczególną uwagę zwrócono na wpływ dyskretyzacji ośrodka na rozwiązanie oraz jego zbieżność.
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Non-linear electrical properties of myocardium in computer simulation
PublicationPomiar impedancji elektrycznej jest obiecującą metodą monitorowania stanu mięśnia sercowego, szczególnie podczas niedokrwienia. Typową metodą pomiaru jest rejestrowanie odpowiedzi-napięcia na pobudzenie prądowe. Odpowiedź jest często aproksymowana jako liniowa względem pobudzenia. Artykuł jest poświęcony oszacowaniu rzędu wielkości nieliniowych komponentów w odpowiedzi.
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Numerical simulation of extreme flooding in a built-up area
PublicationPrzedstawiono dwie numeryczne symulacje propagacji gwałtownej fali powodziowej przez schematyczny model obszaru zabudowanego. Do obliczeń wykorzystano równania przepływu wody płytkiej. Wyniki obliczeń porównano z dostępnymi pomiarami wykonanymi w laboratorium hydraulicznym ENEL-CESI w Mediolanie. Uzyskano zadowalającą zgodność symulacji z eksperymentami.
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Numerical simulation of water drainage in double-porosity soils
PublicationArtykuł dotyczy modelowania przepływu wody w warunkach nienasyconych w gruntach o podwójnej porowatości, które są złożone z dwóch materiałów porowatych o bardzo różnych parametrach. przepływ w takich ośrodkach często charakteryzuje się powstawaniem lokalnych gradientów ciśnienia między obszarami dobrze isłaboprzepuszczalnymi.Przedstawiono matematyczny model przepływu wody w gruncie w strefie nienasyconej. Przepływ odbywa się w...
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INFOGEST static in vitro simulation of gastrointestinal food digestion
PublicationDeveloping a mechanistic understanding of the impact of food structure and composition on human health has increasingly involved simulating digestion in the upper gastrointestinal tract. These simulations have used a wide range of different conditions that often have very little physiological relevance, and this impedes the meaningful comparison of results. The standardized protocol presented here is based on an international consensus...
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Computer simulation of detonation of shaped charge in sea water
PublicationArtykuł zawiera opis systemu przeciwnimowego Głuptak, koncentrując się na opisie działania ładunku kumulacyjnego do niszczenia min morskich. Opisano sposób formowania wiązki plazmy uderzającej w obudowę miny po zdetonowaniu opisywanego ładunku kształtowego. Zaprezentowano obraz symulacyjny i zdjęcia poklatkowe penetracji plazmy w obiekcie niszczonym.
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Agents in Simulation of Cyberattacks to Evaluate Security of Critical Infrastructures
PublicationIn the last years critical infrastructures have become highly dependent on the information technologies and exposed to cyberattacks. Because the effects of the attacks can be detrimental, it is crucial to comprehensively asses the security of the infrastructures' information systems. This chapter describes MAlSim - the simulator of malicious software based on software agents, developed for the needs of a testbed for critical infrastructures...
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Molecular basis of the osmolyte effect on protein stability: a lesson from the mechanical unfolding of lysozyme
PublicationOsmolytes are a class of small organic molecules that shift the protein folding equilibrium. For this reason, they are accumulated by organisms under environmental stress, and find applications in biotechnology where proteins need to be stabilized or dissolved. However, despite years of research, debate continues over the exact mechanisms underpinning the stabilizing and denaturing effect of osmolytes. Here, we simulated the mechanical...
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ECG measurement in the bathtub - electrodes on the sides of the bathtub, bath simulation - women
Open Research DataThe measurement data shows the measurement of the ECG signal in water in the bathtub. The data includes the measurement time, the reference ECG signal from the chest, and the ECG signal measured by electrodes placed in the bathtub without contact with the human body. Using the presented data, it is possible to estimate the optimal arrangement of measuring...
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Solubility of dapsone in deep eutectic solvents: Experimental analysis, molecular insights and machine learning predictions
PublicationBackground. Dapsone (DAP) is an anti-inflammatory and antimicrobial active pharmaceutical ingredient used to treat, e.g., AIDS-related diseases. However, low solubility is a feature hampering its efficient use. Objectives. First, deep eutectic solvents...
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Effect of Pin Shape on Thermal History of Aluminum-Steel Friction Stir Welded Joint: Computational Fluid Dynamic Modeling and Validation
PublicationThis article studied the effects of pin angle on heat generation and temperature distribution during friction stir welding (FSW) of AA1100 aluminum alloy and St-14 low carbon steel. A validated computational fluid dynamics (CFD) model was implemented to simulate the FSW process. Scanning electron microscopy (SEM) was employed in order to investigate internal materials’ flow. Simulation results revealed that the mechanical work...
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Model Management for Low-Computational-Budget Simulation-Based Optimization of Antenna Structures Using Nature-Inspired Algorithms
PublicationThe primary objective of this study is investigation of the possibilities of accelerating nature-inspired optimization of antenna structures using multi-fidelity EM simulation models. The primary methodology developed to achieve acceleration is a model management scheme which the level of EM simulation fidelity using two criteria: the convergence status of the optimization algorithm, and relative quality of the individual designs...
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Surrogate-assisted EM-driven miniaturization of wideband microwave couplers by means of co-simulation low-fidelity models
PublicationThis article proposes a methodology for rapid design optimization of miniaturized wideband couplers. More specifically, a class of circuits is considered, in which conventional transmission lines are replaced by their abbreviated counterparts referred to as slow-wave compact cells. Our focus is on explicit reduction of the structure size as well as on reducing the CPU cost of the design process. For the sake of computational feasibility,...
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Polynomial analysis as a new way of describing dynamic impedance spectra – Differential and relative impedance spectra
PublicationModel measurements of an equivalent electrical system were carried out using the technique of Dynamic Electrochemical Impedance Spectroscopy. The measurement took the form of potentiodynamic changes imposed on the tested system. Using the possibility of continuous impedance measurements, an attempt was made to develop an original and innovative method of analyzing impedance spectrograms, which is termed polynomial analysis. As...
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Electrochemistry meets enzymes: Investigation of the biotransformation pathway of C-1311 based on electrochemical simulation in comparison to in vitro methods.
PublicationThe knowledge of the metabolic pathways and the biotransformation of new drugs is one of the major challenges in pharmaceutical research. It is crucial for elucidation of degradation routes of the new biologically active compounds, especially in the area of possible toxicity. Conventional in vitro drug metabolism studies are based on incubating drug candidate with e.g. hepatocytes or, most importantly, liver cell microsomes and...
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Creating dynamic maps of noise threat using pl-grid infrastructure; materiały konferencyjne
PublicationThis paper presents functionality and operation results of the system for creating dynamic maps of noise thread with the use of the PL-Grid infrastructure integrated with distributed sensors network for measuring, modeling and rendering noise level distribution. The work presented provides a demonstration of the services being prepared within the PLGrid Plus project. Specific computational environments, so called domain grids,...
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Numerical investigation on dynamic response of a steel lattice tower under various seismic events
PublicationThe present paper presents the results of the numerical study designed to investigate the soil-structure flexibility effects on modal parameters (i.e. fundamental frequencies) and time-history analysis response (represented by the top relative displacements) of a 46.8 m high steel lattice tower subjected to a number of ground motions including also one mining tremor. In addition to the fixed-base condition, three different soil...
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Molecular transformation of dissolved organic matter in manganese ore-mediated constructed wetlands for fresh leachate treatment
PublicationThe organic matter (OM) and nitrogen in Fresh leachate (FL) from waste compression sites pose environmental and health risks. Even though the constructed wetland (CW) can efficiently remove these pollutants, the molecular-level transformations of dissolved OM (DOM) in FL remain uncertain. This study reports the molecular dynamics of DOM and nitrogen removal during FL treatment in CWs. Two lab-scale vertical-flow CW systems were...
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Destruction of shell structures under the dynamic load on the human skull trauma basis
PublicationThe main aim of this work is to investigate patterns of potential orbital bone fractures due to mechanical injuries. The solution of the main problem is followed by analysis of several testing examples having straight correlation with civil engineering structures, in which materials of wide range of stiffness are applied. To solve the main problem, the three-dimensional finite element method (FEM) model of the orbital region has...
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Computational Study of Molecular Interactions in ZnCl2(urea)2 Crystals as Precursors for Deep Eutectic Solvents
PublicationDeep eutectic solvents (DESs) are now enjoying an increased scientific interest due to their interesting properties and growing range of possible applications. Computational methods are at the forefront of deciphering their structure and dynamics. Type IV DESs, composed of metal chloride and a hydrogen bond donor, are among the less studied systems when it comes to their understanding at a molecular level. An important example...
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Stability of softly switched multiregional dynamic output controllers with a static antiwindup filter: A discrete-time case
PublicationThis paper addresses the problem of model-based global stability analysis of discrete-time Takagi–Sugeno multiregional dynamic output controllers with static antiwindup filters. The presented analyses are reduced to the problem of a feasibility study of the Linear Matrix Inequalities (LMIs), derived based on Lyapunov stability theory. Two sets of LMIs are considered candidate derived from the classical common quadratic Lyapunov...
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Specific Binding of Cholesterol to the Amyloid Precursor Protein: Structure of the Complex and Driving Forces Characterized in Molecular Detail
PublicationC99 is the C-terminal membrane-bound fragment of the amyloid precursor protein that is cleaved by γ-secretase to release Aβ peptides, the hallmark of Alzheimer’s disease (AD). Specific interactions of C99 with cholesterol have been proposed to underlie the recognized role of cholesterol in promoting amyloidogenesis. By using molecular dynamics simulations, we studied cholesterol binding to C99 in a lipid bilayer. We determined...
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Theoretical Design of the Molecular Structure of Bent-Core Mesogens with Large Second-Order Nonlinear Optical Properties
PublicationABSTRACT: The first hyperpolarizability of two series of moleculeswith bent-shaped structures has been calculated at the ab initio level.The two series consist of carboxyl derivatives for which somemolecules are known to exhibit banana phases and of their sulfinatehomologues that have not been synthesized yet. The final purpose isto reveal the relevance or not in synthesizing these latter molecules.The strategy is based on reporting...