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Search results for: j-domain proteins
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RECSYS CHALLENGE 2015: a BUY EVENT PREDICTION IN THE E-COMMERCE DOMAIN
PublicationIn this paper we present our approach to RecSys Challenge 2015. Given a set of e-commerce events, the task is to predict whether a user will buy something in the current session and, if yes, which of the item will be bought. We show that the data preparation and enrichment are very important in finding the solution for the challenge and that simple ideas and intuitions could lead to satisfactory results. We also show that simple...
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Porcine myofibrillar proteins as potential precursors of bioactive peptides – an in silico study
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Analysis of differences in the stability of proteins encoded in mitochondrial DNA of model organisms
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Evolution of physics-based methodology for exploring the conformational energy landscape of proteins
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The Extracellular Bacterial HtrA Proteins as Potential Therapeutic Targets and Vaccine Candidates
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Generalization of the Elastic Network Model for the Study of Large Conformational Changes in Proteins
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Coarse-grained simulation - an efficient approach for studying motions of large proteins
PublicationOne of the most important challenges in performing Molecular Dynamics (MD) simulations of large protein complexes is to accommodate the model accuracy and the simulation timescale. Hitherto, for the most relevant dynamics of protein aggregates in an explicit aqueous environment, the timescale reachable for the all-atoms simulations is of hundreds of nanoseconds. This range is four to six orders of magnitude smaller than processes...
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Partial characterization of proteins from mussel Mytilus galloprovincialis as a biomarker of contamination
PublicationPrzedmiotem zainteresowania były:- funkcjonalne i przeciwutleniające właściwości białek małża Mytilus galloprovincialis,- poziom zawartości metali ciężkich (ołów i kadm) w tkankach.Badania przeprowadzono dla małży zebranych zarówno w zanieczyszczonych, jak i w czystych obszarach strefy brzegowej Morza Czarnego w regionie Warny (Bułgaria). W badaniach wykorzystano takie techniki analityczne jak: spektroskopia FTIR, fluorescencja,...
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Jerzy Konorski dr hab. inż.
PeopleJerzy Konorski received his M. Sc. degree in telecommunications from Gdansk University of Technology, Poland, and his Ph. D. degree in computer science from the Polish Academy of Sciences, Warsaw, Poland. In 2007, he defended his D. Sc. thesis at the Faculty of Electronics, Telecommunications and Informatics, Gdansk University of Technology. He has authored over 150 papers, led scientific projects funded by the European Union,...
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3-D finite-difference time-domain modelling of ground penetrating radar for identification of rebars in complex reinforced concrete structures
PublicationThis paper presents numerical and experimental investigations to identify reinforcing bars using the ground penetrating radar (GPR) method. A novel element of the paper is the inspection of different arrangements of reinforcement bars. Two particular problems, i.e. detection of few adjacent transverse bars and detection of a longitudinal bar located over or under transverse reinforcement, have been raised. An attention was also...
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Evaluation of long‑term immunity and protection against T. gondii after immunization with multivalent recombinant chimeric T. gondii proteins
PublicationToxoplasmosis caused by the opportunistic, cosmopolitan protozoan Toxoplasma gondii is one of the most common parasitoses in the world. Although it may prove dangerous or even fatal for immunocompromised individuals, immunoprophylaxis for humans is still nonexistent. Thus, the aim of the current work was to assess the ability of two immunogenic recombinant chimeric T. gondii proteins, SAG2-GRA1-ROP1 (SGR) and SAG1-MIC1-MAG1-GRA2...
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Uroczystość wręczenia Nagrody im. J. Heweliusza
EventsTermin: 28.01.2017, godz. 12.00, miejsce: Ratusz Główny Miasta, ul. Długa 46/47 w Gdańsku
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Filozofia 2022/23 J. Gużyński
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Multi-objective design optimization of antenna structures using sequential domain patching with automated patch size deter-mination
PublicationIn this paper, a simple yet efficient and reliable technique for fully automated multi-objective design optimization of antenna structures using sequential domain patching (SDP) is discussed. The optimization procedure according to SDP is a two-step process: (i) obtaining the initial set of Pareto-optimal designs representing the best possible trade-offs between considered conflicting objectives, and (ii) Pareto set refinement...
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A mobile loop order–disorder transition modulates the speed of chaperonin cycling
PublicationMolecular machines order and disorder polypeptides as they form and dissolve large intermolecular interfaces, but the biological significance of coupled ordering and binding has been established in few, if any, macromolecular systems. The ordering and binding of GroES co-chaperonin mobile loops accompany an ATP-dependent conformational change in the GroEL chaperonin that promotes client protein folding. Following ATP hydrolysis,...
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Time Domain Modeling of Propeller Forces due to Ventilation in Static and Dynamic Conditions
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DALSA: Domain Adaptation for Supervised Learning From Sparsely Annotated MR Images
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Molecular dynamics study of amyloid formation of two Abl-SH3 domain peptides
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Molecular dynamics study of the influence of calcium ions on the conformation of gelsolin S2 domain
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A new deterministic method of finding safe ship trajectory for any convex domain
PublicationW artykule wprowadzono nową deterministyczną metodę wyznaczania bezpiecznej trajektorii statku dla sytuacji spotkania z wieloma obiektami obcymi i dla dowolnej zadanej domeny. Jej prostota i fakt, że minimalizuje ona liczbę manewrów czynią ją dobrą alternatywą dla obecnie stosowanych metod. Metoda jest przedstawiona tak, aby mogła być bezpośrednio zastosowana w pokładowych systemach antykolizyjnych lub w systemach VTS.
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Discrete Green's function approach to disjoint domain simulations in 3D FDTD method
PublicationA discrete Green’s function (DGF) approach to couple 3D FDTD subdomains is developed. The total-field/scattered-field subdomains are simulated using the explicit FDTD method whilst interaction between them is computed as a convolution of the DGF with equivalent current sources measured over Huygens surfaces. In the developed method, the DGF waveforms are truncated using the Hann’s window. The error varies in the range -65 to -40...
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A method of RTS noise identification in noise signals of semiconductor devices in the time domain
PublicationIn the paper a new method of Random Telegraph Signal (RTS) noise identification is presented. The method is based on a standardized histogram of instantaneous noise values and processing by Gram-Charlier series. To find a device generating RTS noise by the presented method one should count the number of significant coefficients of the Gram-Charlier series. This would allow to recognize the type of noise. There is always one (first)...
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Eficient multimode mixed time-frequency domain analysis and optimization of waveguide structures.
PublicationW pracy przedstawiona jest pełnofalowa analiza i optymalizacja struktur falowodowych o zadanej topologii. Nieciągłości falowodowe analizowane są z wykorzystaniem metody FDTD-IBC oraz scharakteryzowane uogólnioną macierzą rozproszenia. Efektywność metody zilustrowana jest na przykładzie filtru falowodowego siódmego rzędu.
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Eficient multimode mixed time-frequency domain analysis and optimization of waveguide structures.
PublicationW pracy przedstawiona jest pełnofalowa analiza i optymalizacja struktur falowodowych o zadanej topologii. Nieciągłości falowodowe analizowane są z wykorzystaniem metody FDTD-IBC oraz scharakteryzowane uogólnioną macierzą rozproszenia. Efektywność metody zilustrowana jest na przykładzie filtru falowodowego siódmego rzędu.
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Time domain diagnosis of anticorrosion coatings via shape designed measurement signals.
PublicationW pracy przedstawiono operującą w dziedzinie czasu metodę diagnostyki pokryć przeciwkorozyjnych, na poziomie identyfikacji parametrów obwodu zastępczego. Metoda jest oparta na pobudzeniu obiektu sygnałem niekonwencjonalnym o projektowanym kształcie i pomiarze odpowiedzi obiektu (tzw. obserwabla) po upływie zadanego czasu T. Parametry obwodu zastępczego są obliczane bezpośrednio z obserwabli na podstawie równań wynikających z topologii...
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A new class of eigenfunction expansion methods for fast frequency-domain analysis of waveguides
PublicationZaprezentowano nową technikę szybkiego obliczania charakterystyk dyspersyjnych falowodów z niejednorodnym wypełnieniem. Metoda ta oblicza przybliżone wartości stałej propagacji dla wymaganej częstotliwości, bazując na bardziej dokładnych wyliczeniach rozkładu pola i stałej propagacji dla kilku wybranych punktów częstotliwości.
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Radar Signal Parameters Estimation Using Phase Accelerogram in the Time-Frequency Domain
PublicationRadar signal parameter estimation, in the context of the reconstruction of the received signal in a passive radar utilizing other radars as a source of illumination, is one of the fundamental steps in the signal processing chain in such a device. The task is also a crucial one in electronic reconnaissance systems, e.g. ELINT (Electronic Intelligence) systems. In order to obtain accurate results it is important to measure, estimate...
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Frequency and time domain characteristics of digital control of electric vehicle in-wheel drives
PublicationIn-wheel electric drives are promising as actuators in active safety systems of electric and hybrid vehicles. This new function requires dedicated control algorithms, making it essential to deliver models that reflect better the wheel-torque control dynamics of electric drives. The timing of digital control events, whose importance is stressed in current research, still lacks an analytical description allowing for modeling its...
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Using contextual conditional preferences for recommendation taska: a case study in the movie domain
PublicationRecommendation engines aim to propose users items they are interested in by looking at the user interaction with a system. However, individual interests may be drastically influenced by the context in which decisions are taken. We present an attempt to model user interests via a set of contextual conditional preferences. We show that usage of proposed preferences gives reasonable values of the accuracy and the precision even when...
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On the differential effect of temperature on the Nusselt-Rayleigh relationship in free convection
PublicationThe aim of and inspiration behind this paper was to explain the reasons, also observed by other researchers, of the discrepancy in the results of experimental free convection, which for small Rayleigh and Nusselt numbers in the initial phase of research can sometimes reach several hundred percent. These discrepancies decrease with increasing heating power and plate surface temperature, in proportion to the increase in Ra and Nu,...
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Empirical Relationship Describing Total Convective and Radiative Heat Loss in Buildings
PublicationOn the basis of theoretical considerations of convective-radiative heat transfer, a relationship was developed enabling the total convective and radiative heat flux QC+R emitted from any object at tw and its surroundings at t∞ to be calculated from known values of the surface temperature of such an object, i.e., the known temperature difference Δt=tw - t∞ and average air temperature Tav. This relationship is applied to thermal...
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Adaptation of the arbitrary Lagrange–Euler approach to fluid–solid interaction on an example of high velocity flow over thin platelet
PublicationThe aim of this study is to analyse the behaviour of a thin plate with air flow velocities of 0.3–0.9 Ma. Data from the experiment and numerical tools were used for the analysis. For fluid–solid interaction calculations, the arbitrary Lagrange–Euler approach was used. The results of the measurements are twofold. The first one is the measurement of the flow before and after vibrating plate, i.e. pure flow plate, and the second consists...
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The electronic characterization of the cubic Laves-phase superconductor CaRh2
PublicationWe present the synthesis and experimental characterization of the electronic properties of the cubic Laves phase superconductor CaRh2. Its crystal structure was confirmed by powder X-ray diffraction and its ambient temperature lattice parameter (a = 7.5326(6) Å) is in good agreement with the literature. Magnetization, resistivity and heat-capacity measurements indicate that CaRh2 is a moderate-coupling type-II superconductor (λe-p = 0.89)...
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Customization of UWB 3D-RTLS Based on the New Uncertainty Model of the AoA Ranging Technique
PublicationThe increased potential and effectiveness of Real-time Locating Systems (RTLSs) substantially influence their application spectrum. They are widely used, inter alia, in the industrial sector, healthcare, home care, and in logistic and security applications. The research aims to develop an analytical method to customize UWB-based RTLS, in order to improve their localization performance in terms of accuracy and precision. The analytical...
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Superconductivity of Ta-Hf and Ta-Zr alloys: Potential alloys for use in superconducting devices
PublicationThe electronic properties relevant to superconductivity are reported for bulk Ta-Hf and Ta-Zr body centered cubic alloys, in a large part to determine whether their properties are suitable for potential use in superconducting qbits. The body centered cubic unit cell sizes increase with increasing alloying. The results of magnetic susceptibility, electrical resistivity, and heat capacity characterization are reported. While elemental...
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Extension of the UNRES Coarse-Grained Force Field to Membrane Proteins in the Lipid Bilayer
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FT-Raman Spectroscopy as a Tool to Study the Secondary Structures of Wheat Gliadin Proteins
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Does Nitrogen Fertilization Affect the Secondary Structures of Gliadin Proteins in Hypoallergenic Wheat?
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Crystal structures of the Bacillus subtilis prophage lytic cassette proteins XepA and YomS
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Proteins Structure Models in the Evaluation of Novel Variant (C.472_477del) in the MOCS2 Gene
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The Characteristics of New SSB Proteins from Metagenomic Libraries and Their Use in Biotech Applications
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Single-stranded DNA-binding proteins (SSBs) - sources and applicationsin molecular biology
PublicationBiałka wiążące się do jednoniciowego DNA (SSB) odgrywają ważną rolę w replikacji, rekombinacji i naprawie DNA u bakterii, archea i eukariota. Ostatnio wzrosło zainteresowanie białkami SSB jako przydatnymi narzędziami w metodach badawczych biologii molekularnej, analitycznych i diagnostycznych. Większość znanych prokariotycznych białek SSB zbudowanych jest z czterech podjednostek (homotetramer) z jedną domeną wiążąca (OB) jednoniciowe...
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TIME-DOMAIN NUMERICAL EVALUATION OF SHIP RESISTANCE AND MOTION IN REGULAR WAVES BY USING THE CFD URANS METHOD
PublicationTaking into account the International Maritime Organization's (IMO) strategy to radically reduce the...
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Potential diagnostic utility of recombinant Toxoplasma gondii proteins for detecting anti-Toxoplasma gondii IgG antibodies in horses serum samples
Open Research DataToxoplasmosis is caused by an intracellular protozoan, Toxoplasma gondii, and is a parasitic disease that occurs in all warm-blooded animals, including humans. Toxoplasmosis is one of the most common parasitic diseases of animals and results in reproductive losses. Diagnosis of toxoplasmosis is currently based on serological assays using native antigens...
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Potential diagnostic utility of recombinant Toxoplasma gondii proteins for detecting anti-Toxoplasma gondii IgG antibodies in goat serum samples
Open Research DataToxoplasmosis is caused by an intracellular protozoan, Toxoplasma gondii, and is a parasitic disease that occurs in all warm-blooded animals, including humans. Toxoplasmosis is one of the most common parasitic diseases of animals and results in reproductive losses. Diagnosis of toxoplasmosis is currently based on serological assays using native antigens...
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Potential diagnostic utility of recombinant Toxoplasma gondii proteins for detecting anti-Toxoplasma gondii IgG antibodies in feline serum samples
Open Research DataToxoplasmosis is caused by an intracellular protozoan, Toxoplasma gondii, and is a parasitic disease that occurs in all warm-blooded animals, including humans. Toxoplasmosis is one of the most common parasitic diseases of animals and results in reproductive losses. Diagnosis of toxoplasmosis is currently based on serological assays using native antigens...
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J-FOR-Journal of Science & Technology for Forest Products and Processes
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Sahara J-Journal of Social Aspects of HIV-AIDS
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Układy napędowe z silnikami indukcyjnymi i filtrami wyjściowymi falowników : Zagadnienia wybrane. - J. Guziński.
PublicationMonografia przedstawia zagadnienia związane z układami napędowymi z silnikami indukcyjnymi i filtrami wyjściowymi falowników. Pokazano problemy składowej zerowej, prądów łożyskowych oraz układów do ograniczania niekorzystnych efektów zasilania falownikowego. Omówiono wybrane struktury filtrów wraz z zaleceniami projektowymi. Skupiono się na estymacji zmiennych stanu oraz metodach sterowania przy uwzględnieniu modelu filtru sinusoidalnego....
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A nontargeted approach to determine the authenticity of Ginkgo biloba L. plant materials and dried leaf extracts by liquid chromatography-high-resolution mass spectrometry (LC-HRMS) and chemometrics
PublicationThe lack of stringent regulations regarding raw materials for herbal supplements used for medicinal purposes has been a constant challenge in the industry. Ginkgo biloba L. leaf extracts attract consumers because of the supposed positive effect on mental performance and memory. Supplements are produced using dried leaf materials and standardized leaf extracts such as EGb 761. Adulteration of Ginkgo biloba L. plants and extracts...