Search results for: CYP51A SEQUENCE
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Sequencing results and other data presented in article published in Applied Microbiology and Biotechnology
Open Research DataThis folder contains sequences of the strains SzA14, SzA16 and SzB3. Other data presented in the article published in Applied Microbiology and Biotechnology have been also included.
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Direct algorithm for optimizing robust MPC of drinking water distribution systems hydraulics
PublicationModel-based predictive control is an effective method for control the large scale systems [1]–[6], [8], [16], [17]. Method is based on on-line solution of the control task over the control horizon using current and past measurements, as well as the system model. Only a first element of calculated control sequence is applied to the plant. At the next sampling instant, based on new process output measurements, control procedure is...
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Stanowisko do analizy sygnałów przesyłanych w kanale hydroakustycznym
PublicationOpisano stanowisko badawcze, za pomocą którego wyznaczano odpowiedzi kanału hydroakustycznego na pobudzenie sygnałem modulowanym ciągiem pseudoprzypadkowym PRBS (Pseudo Random Binary Sequence) oraz przeprowadzono eksperymenty z transmisją danych z rozpraszaniem widma metodą bezpośrednią. Omówiono wyniki badań w warunkach laboratoryjnych oraz w jeziorze i basenie portu morskiego. Badania wykonano w warunkach statycznych.
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SOME CONVERGENCE PROPERTIES OF THE SUM OF GAUSSIAN FUNCTIONALS
PublicationIn the paper, some aspects of the convergence of series of dependent Gaussian sequences problem are solved. The necessary and sufficient conditions for the convergence of series of centered dependent indicators are obtained. Some strong convergence results for weighted sums of Gaussian functionals are discussed.
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Phylogenetic analysis of Oncidieae subtribe - ITS1-5,8S-ITS2
Open Research DataThe dataset contains alignment and consensus matrix files, and results of phylogenetic analysis of ITS1- 5,8S-ITS2 region from 186 orchid species considered to belong Oncidieae subtribe. Sequences were assessed from NCBI GeneBank (list of all records with identifiers in the separate file)
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Phylogenetic analysis of Oncidieae subtribe - matK plastid region
Open Research DataThe dataset contains alignment and consensus matrix files, and results of phylogenetic analysis of plastid matK region from 186 orchid species considered to belong Oncidieae subtribe. Sequences were assessed from NCBI GeneBank (list of all records with identifiers in the separate file)
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Computer-aided Analysis of Induced Sheath Voltages in High Voltage Power Cable System
PublicationThis paper concerns the effect of configuration of high voltage power cables on induced voltages in their metallic sheaths. One, two or three cables per phase and phase sequence of the cables are considered. Computing of the voltages was performed for a normal operation and in case of earth fault. Various ways of the sheaths bonding are considered as well. Shock hazard and voltage stress of non-metallic outer sheath of cables are...
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The New LM-PCR/Shifter Method for the Genotyping of Microorganisms Based on the Use of a Class IIS Restriction Enzyme and Ligation Mediated PCR
PublicationThis study details and examines a novel Ligation-Mediated - Polymerase Chain Reaction (LM-PCR) method. Named the LM-PCR/Shifter, it relies on the use of a Class IIS restriction enzyme giving restriction fragments with different 4 base, 5' overhangs, this being the Shifter, and the ligation of appropriate oligonucleotide adapters. A sequence of 4-base, 5' overhangs of the adapter and a 4-base sequence of the 3' end of the primer(s)...
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On-Line Partitioning for On-Line Scheduling with Resource Conflicts
PublicationWithin this paper, we consider the problem of on-line partitioning the sequence of jobs which are competing for non-sharable resources. As a result of partitioning we get the subsets of jobs that form separate instances of the on-line scheduling problem. The objective is to generate a partition into the minimum number of instances such that the response time of any job in each instance is bounded by a given constant. Our research...
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On Computing Curlicues Generated by Circle Homeomorphisms
PublicationThe dataset entitled Computing dynamical curlicues contains values of consecutive points on a curlicue generated, respectively, by rotation on the circle by different angles, the Arnold circle map (with various parameter values) and an exemplary sequence as well as corresponding diameters and Birkhoff averages of these curves. We additionally provide source codes of the Matlab programs which can be used to generate and plot the...
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Design. Metodology outline and practice
PublicationNa tle - uznawanego za typowy - schematu prac składających się na proces projektowania, pokazano przykładowe tworzenie inicjatywy sprawczej oraz rozwój koncepcji dotyczących sformułowania konkretnego zadania projektowego w dziedzinie budowy maszyn.Temat dotyczył obszaru projektowania turbin wodnych.The origin of project initiative, as well as concept development related to formulating a specific design goal, are presented in the...
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Dynamics of Field Line Mappings in Magnetic Flux Tubes
PublicationWe study the topological constraints on the dynamics of magnetic field lines in flux tubes. Our approach is based on the application of the topological invariant: fixed point index. We consider periodic flux tubes and find various restrictions on the field lines that come from the sequence of fixed point indices of iterations. We also analyze the case of a tube with a cylindrical obstacle, deducing some special dynamical properties...
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Path Loss Modelling for Location Service Applications
PublicationThe aim of this paper is the path loss modeling for the radiolocation services in radiocommunication networks, particularly in cellular networks. The main results of the measurements obtained in the physical layer of the UMTS are introduced. A new method for the utilization of the multipath propagation phenomenon to improve the estimation of the distance between the mobile station (MS) and the base station (BS) is outlined. This...
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Generalized Savitzky–Golay filters for identification of nonstationary systems
PublicationThe problem of identification of nonstationary systems using noncausal estimation schemes is consid-ered and a new class of identification algorithms, combining the basis functions approach with localestimationtechnique,isdescribed.Unliketheclassicalbasisfunctionestimationschemes,theproposedlocal basis function estimators are not used to obtain interval approximations of the parametertrajectory, but provide a sequence of point...
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Analysis of distance measurement errors in CW FM sonar with MLS code modulation
PublicationAlthough used in the classic silent sonar, the CW FM sounding signal has a major flaw which is its inaccuracy in determining the distance to a target. The authors of the article have developed a concept of silent sonar using frequency modulation signals switched by pseudorandom codes, already discussed in their previous work. This article presents a detailed analysis of errors in CW FM sonar with pseudo-random sequence code modulation...
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Visual Traffic Noise Monitoring in Urban Areas
PublicationThe paper presents an advanced system for railway and road traffic noise monitoring in metropolitan areas. This system is a functional part of a more complex solution designed for environmental monitoring in cities utilizing analyses of sound, vision and air pollution, based on a ubiquitous computing approach. The system consists of many autonomous, universal measuring units and a multimedia server, which gathers, processes and...
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Solubilization of keratins and functional properties of their isolates and hydrolysates
PublicationThe keratinous wastes of the textile industry and poultry slaughterhouses may be used as sources of soluble keratins or hydrolysates. This review presents methods for processing raw keratin-based materials into bioproducts with functional and bioactive properties suitable for biomedical, cosmetic, food, and agricultural applications. Soluble keratin can be obtained by thermal treatment in some organic solvents, reduction, or oxidation...
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Cytochrome P450 izoenzymes involved in metabolism of antitumor 9-amino-1-nitroacridine derivatives, C-857, C-1748
PublicationPraca jest częścią szerszych badań zmierzających do poznania molekularnego mechanizmu metabolicznej transformacji przeciwnowotworowych pochodnych 9-amino-1-nitroakrydyny. W naszym zespole wyselekcjonowano pochodną nowej generacji, która w porównaniu z poprzednimi wykazała znacznie obniżoną toksyczność ogólną. W wyniku przeprowadzonych badań wykazaliśmy, że nowa pochodna jest znacznie mniej podatna na metabolizm katalizowany przez...
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Personalized prediction of the secondary oocytes number after ovarian stimulation: A machine learning model based on clinical and genetic data
PublicationControlled ovarian stimulation is tailored to the patient based on clinical parameters but estimating the number of retrieved metaphase II (MII) oocytes is a challenge. Here, we have developed a model that takes advantage of the patient’s genetic and clinical characteristics simultaneously for predicting the stimulation outcome. Sequence variants in reproduction-related genes identified by next-generation sequencing were matched...
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Novel monovalent and multivalent recombinant proteins of Borrelia burgdorferi sensu lato with potential diagnostic value – construction and biotechnological production
PublicationThe diverse antigenic structure of Borrelia burgdorferi sensu lato (s.l.) and the low degree of protein sequence conservation between genospecies causes many limitations in serodiagnosis of Lyme disease (LD). Using expression systems based on Escherichia coli, five monovalent B. burgdorferi s.l. recombinant proteins were produced. i.e., BB0108, BB0126, BB0298, BB0323, BB0689 (each in three variants derived from Borrelia afzelii,...
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Cavitation Erosion of Nodular Cast Iron - Microstructural Effects
PublicationThe paper deals with susceptibility of nodular cast iron with ferritic-pearlitic matrix on cavitation erosion. Cavitation tests were carried out with the use of a cavitation erosion vibratory apparatus employing a vibration exciter operated at frequency of 20 kHz. The study allowed to determine the sequence of subsequent stages in which microstructure of cast iron in superficial regions is subject to degradation. The first features...
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Magnetic field microsensor based on GaAs MESFET
PublicationA novel concept of the drain separation design in a horizontally-split-drain GaAs MAGFET sensor, based on epitaxial layer growth, was developed. Proper choice of GaAs/AlAs/GaAs epitaxial layer sequence provided good electrical isolation between the drain regions. The measured leakage current between the drain regions was in the range of nA for up to 2V drain voltage bias difference. Performed analytical and numerical calculations...
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Radio Link Measurement Methodology for Location Service Applications
PublicationThe aim of this paper is the methodology of measurements executed in a radio link for the realization of radiolocation services in radiocommunication networks, particularly in cellular networks. The main results of the measurements obtained in the physical layer of the universal mobile telecommunications system (UMTS) are introduced. A new method for the utilization of the multipath propagation phenomenon to improve the estimation...
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Laboratory Stand for Wideband Analysis Radiocommunication Signals
PublicationA laboratory stand for wideband analysis radiocommunication signals is presented in the paper. The stand is designed for signals acquisition in wide spectrum and research a field of digital signal processing. Procedures used for simultaneous acquiring many frequency channels in selected wide band are described. The method of detection of direct sequence spread spectrum signals (DS SS) which power spectral density is lower than...
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Laboratory stand for wideband analysis radiocommunication signals
PublicationA laboratory stand for wideband analysis radiocommunication signals is presented in the paper. The stand is designed for signals acquisition in wide spectrum and research a field of digital signal processing. Procedures used for simultaneous acquiring many frequency channels in selected wide band are described. The method of detection of direct sequence spread spectrum signals (DS SS) which power spectral density is lower than...
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Note on the variance of the sum of gaussian functonals
PublicationDowodzi się oszacowania wariancji sum funkcjonałów losowych, konstruowanych dla zależnego ciągu gaussowskiego.Let (Xi; i = 1; 2; : : :) be a Gaussian sequence with Xi 2 N(0; 1) for each i and suppose its correlation matrix R = (ij)i;j1 is the matrix of some linear operator R : l2 ! l2. Then for fi 2 L 2(), i = 1; 2; : : : ; where is the standard normal distribution, we estimate the variation of the sum of the Gaussian functionals...
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Reconfiguring Minimum Dominating Sets in Trees
PublicationWe provide tight bounds on the diameter of γ-graphs, which are reconfiguration graphs of the minimum dominating sets of a graph G. In particular, we prove that for any tree T of order n ≥ 3, the diameter of its γ-graph is at most n/2 in the single vertex replacement adjacency model, whereas in the slide adjacency model, it is at most 2(n − 1)/3. Our proof is constructive, leading to a simple linear-time algorithm for determining...
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Approach Manoeuvre During Emergency Ship-to-Ship Transfer Operation with Oil Spill
PublicationOne of the major activities during Ship to Ship (STS) transfer operation at sea is to safe approach the Ship to be Lightered (SBL) which moves on a constant heading with slow speed or drifting. In the paper described the manoeuvring problem for approaching during emergency STS transfer operation with oil spill. The approach manoeuvre is considered as a sequence of navigation manoeuvres in specific navigational environment with...
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Odtwarzanie przebiegu trasy kolejowej o złożonym ukształtowaniu geometrycznym
PublicationKształt eksploatowanych torów kolejowych jest w niektórych sytuacjach bardzo złożony, a jednocześnie − jak wykazały przeprowadzone ciągłe pomiary satelitarne − niekiedy tak zdeformowany, że określenie kierunków głównych okazuje się niemożliwe.W pracy przedstawiono program komputerowy do odtwarzania przebiegu trasy kolejowej w takich właśnie przypadkach. Przygotowano zestaw funkcji realizujących połączenia prostych i łuków kołowych...
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A Reduction Method for Bathymetric Datasets that Preserves True Coastal Water Geodata
PublicationWater areas occupy over 70 percent of the Earth’s surface and are constantly subject to research and analysis. Often, hydrographic remote sensors are used for such research, which allow for the collection of information on the shape of the water area bottom and the objects located on it. Information about the quality and reliability of the depth data is important, especially during coastal modelling. In-shore areas are liable...
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Novel anticancer strategy aimed at targeting shelterin complexes by the induction of structural changes in telomeric DNA: hitting two birds with one stone.
PublicationThe ends of chromosomes in mammals are composed of telomeric DNA containing TTAGGG repeats, which bind specific proteins called shelterins. This telomeric DNA together with shelterins form a cap that protects the ends of chromosomes from being recognized as sites of DNA damage and from chromosomal fusions. Many very successful antitumor drugs used in the treatment of cancer patients bind to DNA, some of them with a prominent sequence...
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Expression of a GDSL esterase from Pseudomonas sp. S9 in Pichiapastoris
PublicationCold active lipolytic enzymes are promising to replace the conventional enzymes processes of biotechnological industries. One of the most important feature of the cold-active lipases and esterases is that they offer economic benefits through energy saving. In general, they exhibit high activity at low temperatures and low thermostability at moderate temperatures. Lipolytic enzyme EstS9 was isolated from Pseudomonas sp. S9. A multiple...
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A vector-enzymatic DNA fragment amplification-expression technology for construction of artificial, concatemeric DNA, RNA and proteins for novel biomaterials, biomedical and industrial applications
PublicationA DNA fragment amplification/expression technology for the production of new generation biomaterials for scientific, industrial and biomedical applications is described. The technology enables the formation of artificial Open Reading Frames (ORFs) encoding concatemeric RNAs and proteins. It recruits the Type IIS SapI restriction endonuclease (REase) for an assembling of DNA fragments in an ordered head-to-tail-orientation. The...
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Estimation of interior-permanent-magnet-synchronous-motor rotor position by analysis of phase-current derivatives
PublicationThis paper describes an algorithm for estimation of IPMSM rotor angular position. The algorithm uses derivatives of motor phase currents resulting from PWM modulation to obtain the rotor position. The presented method is designed for medium- and high-speed range, since it is based on determination of the EMF vector. Calculation of the motor position is performed in every PWM cycle. The standard SV-PWM method is used to determine...
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A method for testing the wide-sense stationary uncorrelated scattering assumption fulfillment for an underwater acoustic channel
PublicationWide-sense stationary and uncorrelated scattering (WSSUS) assumptions are often applied for the statistical description of wireless communication channels. However, in the case of underwater acoustic channels the WSSUS model is of limited value. The degree of similarity of in-phase and quadrature components of the channel impulse response, measured with the use of bandpass modulated signals, can be used as an indicator of WSSUS...
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ANALIZA EFEKTYWNOŚCI METOD GŁĘBOKIEGO UCZENIA W ODBIORZE SYGNAŁÓW GMSK
PublicationSztuczna inteligencja odnajduje coraz szersze zastosowanie we współczesnej radiokomunikacji, choć głównie w ujęciu badawczym. Niniejszy artykuł przedstawia przegląd i ewaluację metod z obszaru głębokiego uczenia umożliwiających detekcję sygnałów z modulacją GMSK (ang. Gaussian Minimum Shift Keying) w kanale AWGN. Badane modele porównane zostały z optymalnym detektorem pracującym zgodnie z regułą największej wiarygodności MLSE (ang....
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Local basis function estimators for identification of nonstationary systems
PublicationThe problem of identification of a nonstationary stochastic system is considered and solved using local basis function approximation of system parameter trajectories. Unlike the classical basis function approach, which yields parameter estimates in the entire analysis interval, the proposed new identification procedure is operated in a sliding window mode and provides a sequence of point (rather than interval) estimates. It is...
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Metodyka wdrażania Zarządzania Wiekiem w Przedsiebiorstwach i Organizacjach Publicznych uczestniczących w projekcie Best Agers Lighthouses
PublicationCelem artykułu jest przedstawienie metodyki wdrażania zarządzania wiekiem w małych i średnich przedsiębiorstwach i organizacjach publicznych Regionu Morza Bałtyckiego, opracowanej w ramach projektu Best Agers Lighthouses –Strategic Age Management for SME in the Baltic Sea Region. W artykule opisano m.in. sekwencję kluczowych działań podjętych podczas procesu wdrażania oraz strukturę podmiotową wspierającą współpracę uczestników...
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Pomiar odpowiedzi impulsowej kanału radiowego na obszarze morskim i przybrzeżnym
PublicationW artykule zaprezentowano wyniki pomiarów odpowiedzi impulsowej kanału radiowego na obszarze morskim i przybrzeżnym. Pomiary przeprowadzono na częstotliwości 1457 MHz a sygnałem sondującym był sygnał o paśmie 10 MHz z modulacją BPSK i pseudoprzypadkową zawartością binarną. Odbierane sygnały były rejestrowane przez dwie stacje ruchome, zainstalowane w samolocie i na łodzi patrolowej. Podczas późniejszej obróbki danych zastosowano...
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Fungal Typin Methods
PublicationThe broad application of the molecular techniques in mycoses diagnosis is related to increase of infections caused by fungi in many countries. The oldest typing methods relaying on fenotypic observation, physiological and biochemical examination have had very limited importance from decades. Novadays, the molecular biology methods took their place. Most of the genotyping methods have been devoleped to be applied for typing of bacteria...
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Evaluation of Respiration Rate Using Thermal Imaging in Mobile Conditions
PublicationRespiratory rate is very important vital sign that should be measured and documented in many medical situations. The remote measurement of respiration rate can be especially valuable for medical screening purposes (e.g. severe acute respiratory syndrome (SARS), pandemic influenza, etc.). In this chapter we present a review of many different studies focused on the measurements and estimation of respiration rate using thermal imaging...
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New method of IEEE 802.15.4a UWB Impulse Radio Spectrum Shaping
PublicationThis paper presents a new technique of IEEE 802.15.4a ultra-wideband signal spectrum control, based on changes in sequences of transmitted pulses with very short duration time. Basic parameters of UWB signal and outline of proposed spectrum shaping methods are briefly described. The main part of the paper presents influence of signal and algorithms parameters on the results of spectrum shaping.
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Terminal charging scheduling of battery electric buses based on vehicle routing problem
PublicationElectric buses are considered to be a viable solution for reducing emission in dense urban areas. However, the greater charging time is a huge challenge for operators. In this paper, charging scheduling method was elaborated based on vehicle routing problem using mixed-integer linear programming model. The main novelty of the paper is the combination of modelling aspect, namely flexible turn sequence and heterogeneous shared charging...
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IPMSM rotor position estimator based on analysis of phase current derivatives
PublicationThis paper describes an algorithm for estimation of IPMSM angular rotor position. The algorithm uses derivatives of motor phase currents resulting from PWM modulation to obtain the rotor position. The presented method is designed for medium- and high-speed range, since it is based on determination of the EMF vector. Algorithm is characterised by a very simple formulae. The calculation of rotor position is performed in every PWM...
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DS-CDMA receiver in Software Defined Radio technology. Admission to the implementation of a RAKE receiver
PublicationProgrammable radio is one of the latest trends in the construction of multi-standard receivers. The technology, called Software Defined Radio (SDR), is also an ideal test platform that allows to try out different algorithms of signal receiving. This particular feature led to choose this platform to implement a DS-CDMA receiver (Direct Sequence Code Division Multiple Access). The use of SDR allows for a gradual upgrade of data processing...
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ADAPTIVE IDENTIFICATION OF TIME-VARYING IMPULSE RESPONSE OF UNDERWATER ACOUSTIC COMMUNICATION CHANNEL
PublicationThe transmission properties of underwater acoustic communication channel can change dynamically due to the movement of acoustic system transmitter and receiver or underwater objects reflecting transmitted signal. The time-varying impulse response measurement and estimation are necessary to match the physical layer of data transmission to instantaneous channel propagation conditions. Using the correlative measurement method, impulse...
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New PCR test for detection of Candida glabrata based on the molecular target chosen by the RAPD technique
PublicationRapid, reliable diagnosis is a necessary condition for the successful treatment of infections. Such diagnostic assays are continually being developed. #e paper presents a method for selecting the molecular target for PCR-based diagnostics based on the comparison of RAPD patterns. A sequence encoding Candida glabrata CBS138 hypothetical protein was selected. The limit of detection for PCR and real-time PCR reactions with DNA extracted...
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Fixed point indices of iterates of a low-dimensional diffeomorphism at a fixed point which is an isolated invariant set
PublicationLet f be an R^n-diffeomorphism, where n = 2, 3, for which {0} is an isolated invariant set. We determine all possible forms of the sequences of fixed point indices of iterates of f at 0, {ind(f n, 0)}_n, confirming in R3 the conjecture of Ruiz del Portal and Salazar (J Differ Equ 249, 989–1013, 2010).
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The New LM-PCR/Shifter Method for the Genotyping of Microorganism
PublicationTechniques relies on the ligation of appropriates adapters (LM-PCR) as AFLP, PCR MP and ADSRRS are successfully used for epidemiological studies for prokaryotic and eukaryotic microorganisms. In this study we propose a new method, called the LM-PCR/Shifter, based on the use of a Class IIS restriction enzyme giving restriction fragments with different 4 base 5' overhangs (Shifter) and the ligation of appropriate oligonucleotide...
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Methods for Elucidation of DNA-Anticancer Drug Interactions and Their Applications in the Development of New Drugs
PublicationDNA damaging agents including anthracyclines, camptothecins and platinum drugs are among most frequently used drugs in the chemotherapeutic routine. Due to their relatively low selectivity for cancer cells, administration is associated with adverse side effects, whereas the inherent genotoxicity of these drugs is associated with risk of developing secondary cancers. Development of new drugs, which could be spared of these drawbacks...