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Wyniki wyszukiwania dla: PROTEIN FOLDING
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Analysis of the Factors Affecting Static In Vitro Pepsinolysis of Food Proteins
PublikacjaIn this meta-analysis, we collected 58 publications spanning the last seven decades that reported static in vitro protein gastric digestion results. A number of descriptors of the pepsinolysis process were extracted, including protein type; pepsin activity and concentration; protein concentration; pH; additives; protein form (e.g., ‘native’, ‘emulsion’, ‘gel’, etc.); molecular weight of the protein; treatment; temperature; and...
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Modeling SARS‐CoV‐2 proteins in the CASP‐commons experiment
PublikacjaCritical Assessment of Structure Prediction (CASP) is an organization aimed at advancing the state of the art in computing protein structure from sequence. In the spring of 2020, CASP launched a community project to compute the structures of the most structurally challenging proteins coded for in the SARS-CoV-2 genome. Forty-seven research groups submitted over 3000 three-dimensional models and 700 sets of accuracy estimates on...
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Rotational molding of polylactide (PLA) composites filled with copper slag as a waste filler from metallurgical industry
PublikacjaThe research work carried out so far indicates the ever wider possibilities and demand for shaping composite products in the rotational molding technology. This trend was the main reason to use waste-based filler from the metallurgical process as a filler for manufacturing polylactide (PLA)-based remolded composites. Copper slag (CS) was introduced in the single-step processing method to PLA matrix at 5, 10, 20, and 35 wt%. The...
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Adaptive resolution-constrained scalar multiple-description coding
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Post mortem changes in M. iliotibialis lateralis muscle protein profile of emu (Dromaius novaehollandiae)
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Excessive amount of lactose in the diet of two-week-old calves induces urinary protein changes
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Defining a novel domain that provides an essential contribution to site-specific interaction of Rep protein with DNA
PublikacjaAn essential feature of replication initiation proteins is their ability to bind to DNA. In this work, we describe a new domain that contributes to a replication initiator sequence-specific interaction with DNA. Applying biochemical assays and structure prediction methods coupled with DNA–protein crosslinking, mass spectrometry, and construction and analysis of mutant proteins, we identified that the replication initiator of the...
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Sulforaphane, a cruciferous vegetable-derived isothiocyanate, inhibits protein synthesis in human prostate cancer cells
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UNRES server for physics-based coarse-grained simulations and prediction of protein structure, dynamics and thermodynamics
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Methodology of Selecting the Optimal Receptor to Create an Electrochemical Immunosensor for Equine Arteritis Virus Protein Detection
PublikacjaThe study reports a methodology of selecting the optimal receptor to create an electrochemical immunosensor for equine arteritis virus (EAV) protein detection. The detection was based on antigen recognition by antibodies immobilized on gold electrodes. Modification steps were controlled by electrochemical impedance spectroscopy and cyclic voltammetry measurements. In order to obtain the impedance immunosensor with the best parameters,...
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Structural and dynamic changes adopted by EmrE, multidrug transporter protein—Studies by molecular dynamics simulation
PublikacjaEmrE protein transports positively charged aromatic drugs (xenobiotics) in exchange for two protons and thus provides bacteria resistance to variety of drugs. In order to understand how this protein may recognize ligands, the monomer and asymmetric apo-form of the EmrE dimer embedded in a heterogeneous phospholipid (POPE + POPG) membrane were studied by molecular dynamics simulations. Dimer is regarded as a functional form of the...
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Structural and dynamic insights on the EmrE protein with TPP+ and related substrates through molecular dynamics simulations
PublikacjaEmrE is a bacterial transporter protein that forms an anti-parallel homodimer with four transmembrane helices in each monomer. EmrE transports positively charged aromatic compounds, such as TPP+ and its derivatives. We performed molecular dynamics (MD) simulations of EmrE in complex with TPP+, MeTPP+, and MBTPP+ embedded in a membrane. The detailed molecular properties and interactions were analysed for all EmrE-ligand complexes....
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CAVER Analyst 1.0: graphic tool for interactive visualization and analysis of tunnels and channels in protein structures
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Comparison of Antioxidant Activity of Protein Isolates Derived from Selected Dry-Cured Meat Products
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The Escherichia coli RNA polymerase alpha subunit and transcriptional activation by bacteriophage lambda CII protein.
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Mitogen activated protein kinase 4 (MPK4) influences growth in Populus tremula L.×tremuloides
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Rapeseed Meal Waste Biomass as Single-Cell Protein Substrate for Nutritionally-Enhanced Feed Component
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A cryptic ribosome binding site, false signals in reporter systems and avoidance of protein translation chaos
PublikacjaThe expression of reporter gene may be induced by activation of cryptic signalling sequences, as we found while constructing the mutS-lacZ fusion gene. We cloned the Escherichia coli lacZ gene encoding beta-galactosidase into a plasmid vector carrying the Thermus thermophilus mutS gene. The clones expected to produce beta-galactosidase as the C-terminal fusion were selected for the complementation of beta-galactosidase activity...
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E2/E3‐independent ubiquitin‐like protein conjugation by Urm1 is directly coupled to cysteine persulfidation
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Formation of Protein Networks between Mucins: Molecular Dynamics Study Based on the Interaction Energy of the System
PublikacjaMolecular dynamics simulations have been performed for a model aqueous solution of mucin. As mucin is a central part of lubricin, a key component of synovial fluid, we investigate its ability to form cross-linked networks. Such network formation could be of major importance for the viscoelastic properties of the soft-matter system and crucial for understanding the lubrication mechanism in articular cartilage. Thus,the inter- and...
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Improvements and new functionalities of UNRES server for coarse-grained modeling of protein structure, dynamics, and interactions
PublikacjaIn this paper we report the improvements and extensions of the UNRES server (https://unres-server.chem.ug.edu.pl) for physics-based simulations with the coarse-grained UNRES model of polypeptide chains. The improvements include the replacement of the old code with the recently optimized one and adding the recent scale-consistent variant of the UNRES force field, which performs better in the modeling of proteins with the β and the...
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Silica In Silico: A Molecular Dynamics Characterization of the Early Stages of Protein Embedding for Atom Probe Tomography
PublikacjaA novel procedure for the application of atom probe tomography (APT) to the structural analysis of biological systems, has been recently proposed, whereby the specimen is embedded by a silica matrix and ablated by a pulsed laser source. Such a technique, requires that the silica primer be properly inert and bio-compatible, keeping the native structural features of the system at hand, while condensing into an amorphous, glass-like...
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Methodology of Selecting the Optimal Receptor to Create an Electrochemical Immunosensor for Equine Arteritis Virus Protein Detection
PublikacjaThe study reports a methodology of selecting the optimal receptor to create an electrochemical immunosensor for equine arteritis virus (EAV) protein detection. The detection was based on antigen recognition by antibodies immobilized on gold electrodes. Modification steps were controlled by electrochemical impedance spectroscopy and cyclic voltammetry measurements. In order to obtain the impedance immunosensor with the best parameters,...
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The Use of NaOH Solutions for Fouling Control in a Membrane Bioreactor: A Feasibility Study
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Bonding interactions in oxydiacetate and thiodiacetate cobalt(II) and nickel(II) complexes
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POPULATION-BASED MULTI-AGENT APPROACH TO SOLVING MACHINE LEARNING PROBLEMS
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Explicit accumulation model for granular materials under multiaxial cyclic loading.
PublikacjaPróba korelacji parametrów modelu akumulacyjnego piasku z wynikami badań dynamicznych piasku.
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Compaction of freshly pluviated granulates under uniaxial and multiaxial cyclic loading.
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Use of Neural Networks in Diagnostics of Rolling-Element Bearing of the Induction Motor
PublikacjaBearing defect is statistically the most frequent cause of an induction motor fault. The research described in the paper utilized the phenomenon of the current change in the induction motor with bearing defect. Methods based on the analysis of the supplying current are particularly useful when it is impossible to install diagnostic devices directly on the motor. The presented method of rolling-element bearing diagnostics used indirect...
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An O ( n log n ) algorithm for finding edge span of cacti
PublikacjaLet G=(V,E) be a nonempty graph and xi be a function. In the paper we study the computational complexity of the problem of finding vertex colorings c of G such that: (1) |c(u)-c(v)|>=xi(uv) for each edge uv of E; (2) the edge span of c, i.e. max{|c(u)-c(v)|: uv belongs to E}, is minimal. We show that the problem is NP-hard for subcubic outerplanar graphs of a very simple structure (similar to cycles) and polynomially solvable for...
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Finding the protection of lighting grounding with estimating its impulse impedance componets
PublikacjaOmówiono metodę rozdzielania składowych impedancji udarowej uziemień. Podano wskazania dotyczące oceny jakości ochrony odgromowej na podstawie wartości składowych impedancji udarowej.
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Determining PAHs and PCBs in aqueous samples: finding and evaluating sources of error
PublikacjaW pracy opisano wyniki badań modelowych (z wykorzystaniem dopowiednich roztworów wzorcowych), których celem było wykrycie źródeł błędów oznaczeń oraz oszacowanie ich wielkości. Przedmiotem badań było oszacowanie wpływu takich procesów jak:- adsorpcja na ściankach naczyń,- adsorpcja na cząstkach materii zawieszonej,- usuwanie nadmiaru rozpuszczalnika (z ekstraktu)na wyniki oznaczeń końcowych.
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The influence of the welding thermal cycles on corrosion resistance of duplex stainless steel
PublikacjaBadano skłonnośc strefy wpływu ciepła spoin ze stali dupleks do korozyjnego pękania narężeniowego. Wykonano próby korozyjne z wykorzystaniem metody SSRT w środowisku korozyjnym wrzącego MgCl2. Wykazano, że duży udział ferrytu w strukturze SWC pogarsza odpornośc na korozję. Badania metalograficzne na mikroskopie lektronowym wykazały różne sposoby propagacji pęknięcia zależnie od zawartości austenitu w strukturze SWC.
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Fatigue behaviour of SLM maraging steel under variable-amplitude loading
PublikacjaOne of the most challenging issues for additive manufactured materials is fatigue endurance. Engineering components often operate under complex, variable amplitude loadings, in which existing technological imperfections promote fatigue cracks growth and damage of elements eventually. In this study the effects of different variable-amplitude strain levels on fatigue life, 18Ni300 steel was tested. The work presents various behaviours...
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A self-stabilizing algorithm for finding a spanning tree in a polynomial number of moves
PublikacjaW pracy rozważa się rozproszony model obliczeń, w którym struktura systemu jest reprezentowana przez graf bezpośrednich połączeń komunikacyjnych. W tym modelu podajemy nowy samostabilizujący algorytm znajdowania drzewa spinającego. Zgodnie z naszą wiedzą jest to pierwszy algorytm dla tego problemu z gwarantowaną wielomianową liczbą ruchów.
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Impact of intense rains and flooding on mercury riverine input to the coastal zone
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TESTING CONTRACTION AND THERMAL EXPANSION COEFFICIENT OF CONSTRUCTION AND MOULDING POLYMER COMPOSITES
PublikacjaThe paper presents results of systematic tests of contraction and thermal expansion coefficients of materials based on polymer composites. The information on the above material properties is essential both at the design stage and during the use of finished products. Components for the samples were selected in such a way as to represent typical materials used for production of construction and moulding elements. The performed tests...
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TIRE/ROAD NOISE AND TIRE ROLLING RESISTANCE ON PROTOTYPE PERS SURFACE
PublikacjaPoroelastic road surfaces are characterized by low noise of tires running on them.Road pavements of this type are promising solution to problems related to traffic noise in cities and on rural roads. Some technical problems still have to be solved, in particular regarding durability and skid resistance on wet surface. Ongoing and planned works are to contribute to create a quiet, durable and safe road surface, which will become...
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Study of the influence of thermal factors on the welding process of polyethylene gas pipelines,
PublikacjaA one-dimensional calculation scheme is proposed with the help of which it is possible to determine and set the technological parameters with the accuracy to be realized in production conditions: the temperature of the heating element and the heating time, which allows maximum mechanization of the technological operations of polyethylene gas pipelines welding. The numerical value of the coefficient of temperature for polyethylene...
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Degradation of the Concrete Railway Track Bed Located in the Vicinity of the Loading Wharf
PublikacjaThe following article describes the damages of the concrete railway track bed at the place of unloading petroleum products located in the immediate vicinity of the cargo berth. The concrete of the track bed has been a subject to degradation as a result of many years of exploitation resulting, inter alia, in its cyclical flooding of petroleum products during the unloading and loading of rail tankers. Repairs carried out in the previous...
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Influence of the substrate loading on the quality and diameter distribution of SWCNT in alcohol‐CVD
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Interplay of hydrogen bonding and aryl-perfluoroaryl interactions in construction of supramolecular aggregates
PublikacjaThe stacking between aryl and perfluoroaryl units is an important class of the aromatic – aromatic interactions that has attracted rapidly growing interest in recent years. Continuing interest of our group in this subject it had been prepared three new complexes of pentafluorobenzoic acid with benzyl alcohol, 4-methylbenzyl alcohol and 4-tert-butylbenzyl alcohol and in the next step investigated their self-assembly modes by...
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The effect of disturbance caused by rivers flooding on ground beetles (Coleoptera: Carabidae)
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Laser Dissimilar Welding of AISI 430F and AISI 304 Stainless Steels
PublikacjaA dissimilar autogenous laser welded joint of AISI 430F (X12CrMoS17) martensitic stainless steel and AISI 304 (X5CrNi18-10) austenitic stainless steel was manufactured. The welded joint was examined by non-destructive visual testing and destructive testing by macro- and microscopic examination and hardness measurements. With reference to the ISO 13919-1 standard the welded joint was characterized by C level, due to the gas pores...
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An Approximate Linear Analysis of Structures Utilizing Incremental Loading of Force Method
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Rolling resistance and tyre/road noise on rubberised asphalt pavement in Poland
PublikacjaThe paper presents results of tyre/road noise and rolling resistance measurements performed on stone mastics asphalt (SMA) that contains rubberised asphalt, developed and produced by a refinery in Poland. Bituminous binder was modified with polymer and addition of crumb rubber. The first observations of asphalt mixture with the new kind of modified bitumen used on the field section are presented. Rolling resistance of passenger...
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Efficient Complex Root Finding Algorithm for Microwave and Optical Propagation Problems
PublikacjaArticle relates to the use of innovative root finding algorithm (on a complex plane) to study propagation properties of microwave and optical waveguides. Problems of this type occur not only in the analysis of lossy structures, but also in the study of complex and leaky modes (radiation phenomena). The proposed algorithm is simple to implement and can be applied for functions with singularities and branch cuts in the complex plane...
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A note on an approximative scheme of finding almost homoclinic solutions for Newtonian systems
PublikacjaIn this work we will be concerned with the existence of an almost homoclinic solution for a perturbed Newtonian system in a finite dimensional space. It is assumed that a potential is C^1 smooth and its gradient is bounded with respect to a time variable. Moreover, a forcing term is continuous, bounded and squere integrable. We will show that the appproximative scheme due to J. Janczewska for a time periodic potential extends to...
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Rolling Resistance And Tire/Road Noise on Rubberized Asphalt Pavement In Poland
PublikacjaThe paper presents results of tire/road noise and rolling resistance measurements performed on stone-matrix asphalt (SMA) that contains rubberized asphalt developed and produced by the company in Poland. Bituminous binder was modified with polymer and additive of crumb rubber. First observations of asphalt mixture with the new kind of modified bitumen used on the field section are presented. Rolling resistance of passenger car...
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A simplified model of 3-D pipe system conveying flowing liquid
PublikacjaThe paper presents a model reduction technique of a 3-D pipe system with flowing liquid. In the analysis and design of control (mechatronic) systems it is useful to work with simple, low order models. A hybrid reduced order model is proposed. The system model consists of two parts, the modal model and the finite element model.