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A Data Driven Model for Predicting RNA-Protein Interactions based on Gradient Boosting Machine
PublikacjaRNA protein interactions (RPI) play a pivotal role in the regulation of various biological processes. Experimental validation of RPI has been time-consuming, paving the way for computational prediction methods. The major limiting factor of these methods has been the accuracy and confidence of the predictions, and our in-house experiments show that they fail to accurately predict RPI involving short RNA sequences such as TERRA RNA....
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TOWARDS EXPLAINABLE CLASSIFIERS USING THE COUNTERFACTUAL APPROACH - GLOBAL EXPLANATIONS FOR DISCOVERING BIAS IN DATA
PublikacjaThe paper proposes summarized attribution-based post-hoc explanations for the detection and identification of bias in data. A global explanation is proposed, and a step-by-step framework on how to detect and test bias is introduced. Since removing unwanted bias is often a complicated and tremendous task, it is automatically inserted, instead. Then, the bias is evaluated with the proposed counterfactual approach. The obtained results...
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Data-Driven Surrogate-Assisted Optimization of Metamaterial-Based Filtenna Using Deep Learning
PublikacjaIn this work, a computationally efficient method based on data driven surrogate models is pro-posed for the design optimization procedure of a Frequency Selective Surface (FSS)-based filtering antenna (Filtenna). A Filtenna acts as a as module that simultaneously pre-filters unwanted sig-nals, and enhances the desired signals at the operating frequency. However, due to a typically large number of design variables of FSS unit elements,...
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Towards High-Value Datasets Determination for Data-Driven Development: A Systematic Literature Review
PublikacjaOpen government data (OGD) is seen as a political and socio-economic phenomenon that promises to promote civic engagement and stimulate public sector innovations in various areas of public life. To bring the expected benefits, data must be reused and transformed into value-added products or services. This, in turn, sets another precondition for data that are expected to not only be available and comply with open data principles,...
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Buried Object Characterization by Data-Driven Surrogates and Regression-Enabled Hyperbolic Signature Extraction
PublikacjaThis work addresses artificial-intelligence-based buried object characterization using FDTD-based electromagnetic simulation toolbox of a Ground Penetrating Radar (GPR) to generate B-scan data. In data collection, FDTD-based simulation tool, gprMax is used. The task is to estimate geophysical parameters of a cylindrical shape object of various radii, buried at different positions in the dry soil medium simultaneously and independently...
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Reduction of measurement data before Digital Terrain Model generation vs. DTM generalisation
PublikacjaModern data acquisition technologies provide large datasets that are not always necessary in its entirety to properly accomplish the goal of the study. In addition, such datasets are often cumbersome for rational processing, and their processing is time and labour consuming. Therefore, methods that enable to reduce the size of the measurement dataset, such as the generalization of the Digital Terrain Model (DTM) or the reduction...
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Evaluation of the efficiency of the duty cycle of refuse collection vehicle based on real-world data
PublikacjaIn this paper a method of the efficiency evaluation of the duty cycle of Refuse Collection Vehicle is presented. Using real world data, two representative duty cycles were analysed. Total cycle efficiency was calculated, as well as the efficiency of particular cycle phases. Then, energy needed to collect and compact the waste and energy from fuel were compared. Measured and calculated values were shown on the diagrams illustrating...
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Energetic model of hydraulic system of refuse collection vehicle based on simulation and experimental data
PublikacjaThis paper presents an energetic model of hydraulic system of a refuse collection vehicle. First, benefits resulting from implementation of an energetic model in the industry and operation of a Refuse Collection Vehicle are briefly explained. Then, components of the energy consumption in hydraulic circuits of compactor and lifting device are described and combined into a comprehensive model that can be evaluated using basic measurement...
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Research and Analysis of High-Speed Data Transmission Radio Link Designed for Maritime Environment
PublikacjaIn these article, the realization of digital radio link for high-speed data transmission was presented. Its concept and practical realization, using USRP devices from National Instruments, were described. Developed software for generation and reception of digital signals in baseband, including description of modulation types, and time and frequency synchronization mechanisms, was presented. Moreover, an operation of designed radio...
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Advances in Architectures, Big Data, and Machine Learning Techniques for Complex Internet of Things Systems
PublikacjaTe feld of Big Data is rapidly developing with a lot of ongoing research, which will likely continue to expand in the future. A crucial part of this is Knowledge Discovery from Data (KDD), also known as the Knowledge Discovery Process (KDP). Tis process is a very complex procedure, and for that reason it is essential to divide it into several steps (Figure 1). Some authors use fve steps to describe this procedure, whereas others...
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Influence of YARN Schedulers on Power Consumption and Processing Time for Various Big Data Benchmarks
PublikacjaClimate change caused by human activities can influence the lives of everybody onthe planet. The environmental concerns must be taken into consideration by all fields of studyincludingICT. Green Computing aims to reduce negative effects of IT on the environment while,at the same time, maintaining all of the possible benefits it provides. Several Big Data platformslike Apache Spark orYARNhave become widely used in analytics and...
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Floodplain inundation Mapping using SAR Scattering Coefficient Thresholding and Observed Discharge Data
PublikacjaInundation area time series are important for wetlands monitoring and hydrological model validation. This study is conducted in Biebrza floodplain, which is a natural wetland with complex inundation generation processes. In order to map 2014-2018 series of inundation in the floodplain we test our automatic thresholding method on Sentinel 1 data. The threshold value is optimized using correlation of the inundation area with observed...
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Reversible data hiding in encrypted DICOM images using sorted binary sequences of pixels
PublikacjaIn this paper, a novel reversible data hiding method for encrypted DICOM images is proposed. The method utilizes binary decomposition of the input data paired with a sorting process of the obtained binary sequences to ensure efficient data embedding in each predefined data block for specific most significant bit (MSB) planes while exploiting the properties of run-length encoding. The proposed scheme is lossless, and based on the...
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Digitalization Process and Its Impact on Economic Growth A Panel Data Study for Developing Countries
PublikacjaThis book analyses the impact of Information and Communication Technologies (ICTs) on economic development. It contains theoretical and empirical studies, including panel studies on various issues facing developing countries, such as education, corruption, economic growth, government expenditure, financial inclusion, foreign direct investment, infrastructure, economic and social welfare, and inequality. Each chapter offers a well-conceived...
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Analysis of Transformation Methods of Hydroacoustic and Optoelectronic Data Based on the Tombolo Measurement Campaign in Sopot
PublikacjaMeasurements in the coastal zone are carried out using various methods, including Global Navigation Satellite Systems (GNSS), hydroacoustic and optoelectronic methods. Therefore, it is necessary to develop coordinate transformation models that will enable the conversion of data from the land and marine parts to one coordinate system. The article presents selected issues related to the integration of geodetic and hydrographic data....
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Detection of Lexical Stress Errors in Non-Native (L2) English with Data Augmentation and Attention
PublikacjaThis paper describes two novel complementary techniques that improve the detection of lexical stress errors in non-native (L2) English speech: attention-based feature extraction and data augmentation based on Neural Text-To-Speech (TTS). In a classical approach, audio features are usually extracted from fixed regions of speech such as the syllable nucleus. We propose an attention-based deep learning model that automatically de...
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Use of Data from Satellite Navigation System in Operational and Strategic Management of Transport in Cities
PublikacjaThe article presents the possibilities of using data from the Global Positioning System for the development of traffic models and examples of use this data in the transport management. Traffic models are useful tools in planning and evaluation of transport solutions, but also can be used for current, operational transport management.
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Using LSTM networks to predict engine condition on large scale data processing framework
PublikacjaAs the Internet of Things technology is developing rapidly, companies have an ability to observe the health of engine components and constructed systems through collecting signals from sensors. According to output of IoT sensors, companies can build systems to predict the conditions of components. Practically the components are required to be maintained or replaced before the end of life in performing their assigned task. Predicting...
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MAPSERVER – INFORMATION FLOW MANAGEMENT SOFTWARE FOR THE BORDER GUARD DISTRIBUTED DATA EXCHANGE SYSTEM
PublikacjaIn this paper the architecture of the software designed for management of position and identification data of floating and flying objects in Maritime areas controlled by Polish Border Guard is presented. The software was designed for managing information stored in a distributed system with two variants of the software, one for a mobile device installed on a vessel, an airplane or a car and second for a central server. The details...
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Global Value Chains and Wages: International Evidence from Linked Worker-Industry Data
PublikacjaUsing a rich dataset on over 110,000 workers from nine European countries and the USA we study the wage response to industry dependence on foreign value added. We estimate a Mincerian wage model augmented with an input-output interindustry linkages measure accounting for task heterogeneity across workers. Low and mediumeducated workers and those performing routine tasks experience (little) wage decline due to major dependency of...
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The structure of the data flow in integrated urban traffic management systems – the case of TRISTAR system
PublikacjaThe purpose of the article is to offer some insight into the data flow architecture in the Tri-City’s integrated traffic management system called TRISTAR. To that end selected elements of TRISTAR are identified and described as well as the structure for collecting and exchanging data within different sub-systems. Finally, the article highlights how the TRISTAR system can be extended by adding new elements and modules.
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Wide-band modulation and adaptive equalization techniques for fast and reliable underwater data transmission.
PublikacjaSzybkość transmisji w płytkim kanale podwodnym jest ograniczona ze względu na wielokrotne odbicia fal dźwiękowych oraz niestacjonarność kanału. Dla zapewnienia szybkiej i niezawodnej transmisji danych w systemach komunikacji stosowane są złożone techniki modulacji oraz equalizacji kanału. W artykule zaproponowano zastosowanie modulacji OFDM oraz equalizacji adaptacyjnej w systemie komunikacji podwodnej. Modulacja OFDM stosowana...
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Paweł Czarnul dr hab. inż.
OsobyPaweł Czarnul uzyskał stopień doktora habilitowanego w dziedzinie nauk technicznych w dyscyplinie informatyka w roku 2015 zaś stopień doktora nauk technicznych w zakresie informatyki(z wyróżnieniem) nadany przez Radę Wydziału Elektroniki, Telekomunikacji i Informatyki Politechniki Gdańskiej w roku 2003. Dziedziny jego zainteresowań obejmują: przetwarzanie równoległei rozproszone w tym programowanie równoległe na klastrach obliczeniowych,...
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ANYTIME POLYNOMIAL HEURISTIC ALGORITHM FOR PARTITIONING GROUPS OF DATA WITH PRESERVING CLASS PROPORTIONS FOR CROSS-VALIDATION
PublikacjaThe article describes a problem of splitting data for k-fold cross-validation, where class proportions must be preserved, with additional constraint that data is divided into groups that cannot be split into different cross-validation sets. This problem often occurs in e.g. medical data processing, where data samples from one patient must be included in the same cross-validation set. As this problem is NP-complete, a heuristic...
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Processing of LiDAR and Multibeam Sonar Point Cloud Data for 3D Surface and Object Shape Reconstruction
PublikacjaUnorganised point cloud dataset, as a transitional data model in several applications, usually contains a considerable amount of undesirable irregularities, such as strong variability of local point density, missing data, overlapping points and noise caused by scattering characteristics of the environment. For these reasons, further processing of such data, e.g. for construction of higher order geometric models of the topography...
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Comprehensive Comparison of a Few Variants of Cluster Analysis as Data Mining Tool in Supporting Environmental Management
PublikacjaA few variants of hierarchical cluster analysis (CA) as tool of assessment of multidimensional similarity in environmental dataset are compared. The dataset consisted of analytical results of determination of metals (Na, K, Ca, Sc, Fe, Co, Zn, As, Br, Rb, Mo, Sb, Cs, Ba, La, Ce, Sm, Hf and Th) in ambient air dried and kept alive, by the means of hydroponics, moss baskets collected in 12 locations on the area of Tricity (Poland)....
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The Positioning Accuracy of BAUV Using Fusion of Data from USBL System and Movement Parameters Measurements
PublikacjaThe article presents a study of the accuracy of estimating the position coordinates of BAUV (Biomimetic Autonomous Underwater Vehicle) by the extended Kalman filter (EKF) method. The fusion of movement parameters measurements and position coordinates fixes was applied. The movement parameters measurements are carried out by on-board navigation devices, while the position coordinates fixes are done by the USBL (Ultra Short Base...
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Application of agent-based simulated annealing and tabu search procedures to solving the data reduction problem
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SELECTING A REPRESENTATIVE DATA SET OF THE REQUIRED SIZE USING THE AGENT-BASED POPULATION LEARNING ALGORITHM
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Evaluation of water turbine hydrodynamic thrust bearing performance on the basis of thermoelastohydrodynamic calculations and operational data
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Radio system for monitoring and acquisition of data from traffic enforcement cameras - features and assumptions of the system
PublikacjaThe study presents the architecture and selected functional assumptions of Radio System for Monitoring and Acquisition of Data from Traffic Enforcement Cameras (RSMAD). Ultimately, the system will be used for transmission and archiving image data of traffic offenses, but can also perform other duties related to traffic safety. Implementation of the RSMAD system will facilitate, inter alia, issuing the fine process and supervision...
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Application of a modified evolutionary algorithm for the optimization of data acquisition to improve the accuracy of a video-polarimetric system
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Multiservice Optical Fibre Local Area Networks For Data Transmission And Telemetry In The Electric Power Industry
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PLS-Based and Regularization-Based Methods for the Selection of Relevant Variables in Non-targeted Metabolomics Data
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Increasing conclusiveness of metabonomic studies by cheminformatic preprocessing of capillary electrophoretic data on urinary nucleoside profiles
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Circulating MAdCAM-1 and ITGB7 in Patients with Plaque Psoriasis and Eruptive Lichen Planus—Preliminary Data
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A novel method for archiving multibeam sonar data with emphasis on efficient record size reduction and storage
PublikacjaOver the past few years considerable advances in sonar technology, spatial positioning capabilities and computer processing power have lead to significant improvements in mapping, imaging and technologies of seafloor exploration. Recently, modern multibeam echosounder systems (MBES) capable of recording backscatter data for the whole water column, not just for the seabed, have become available thus providing data allowing for...
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Mean Shift Segmentation Assessment for Individual Forest Tree Delineation from Airborne Lidar Data
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Application of physicochemical data for water-quality assessment of watercourses in the Gdansk Municipality (South Baltic coast)
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BatchI: Batch effect Identification in high-throughput screening data using a dynamic programming algorithm
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Count Data Modeling About Relationship Between Dubai Housing Sales Transactions and Financial Indicators
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Occurrence and variability of River Habitat Survey features across Europe and the consequences for data collection and evaluation
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Seeking genetic signature of radiosensitivity - a novel method for data analysis in case of small sample sizes
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Computational complexity and length of recorded data for fluctuation enhanced sensing method in resistive gas sensors
PublikacjaThis paper considers complexity and accuracy of data processing for gas detection using resistance fluctuation data observed in resistance gas sensors. A few selected methods were considered (Principal Component Analysis – PCA, Support Vector Machine – SVM). Functions like power spectral density or histogram were used to create input data vector for these algorithms from the observed resistance fluctuations. The presented considerations...
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NUMERICAL MODEL QUALITY ASSESSMENT OF OFFSHORE WIND TURBINE SUPPORTING STRUCTURE BASED ON EXPERIMENTAL DATA
PublikacjaAs a structure degrades some changes in its dynamical behavior can be observed, and inversely, observation and evaluation of these dynamical changes of the structure can provide information of structural state of the object. Testing of the real structure, besides of being costly, can cover only limited working states. It is particularly considerable in case of hardly accessible, and randomly/severely dynamically loaded offshore...
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Lipophilicity data for some preservatives estimated by reversed-phase liquid chromatography and different copmutation methods
PublikacjaW pracy przedstawiono wyniki badań właściwości chromatograficznych wybranych 12 związków z grupy kopnserwantów. Lipofilowy charakter tych związków był oceniany na podtsawie różnych parametrów retencyjnych (log Kw, log K i inne. Zastosowano narzędzie chemometryczne do zbadania korelacji występujących pomiędzy tymi parametrami retencji chromatogfraficznej.
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The effect of a unique halide-stabilizing residue on the catalytic properties of haloalkane dehalogenase DatA fromAgrobacterium tumefaciensC58
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Application of hidden Markov models to eye tracking data analysis of visual quality inspection operations
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The Use of Satellite Data to Determine the Changes of Hydrodynamic Parameters in the Gulf of Gdańsk via EcoFish Model
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Landsat 8 Data as a Source of High Resolution Sea Surface Temperature Maps in the Baltic Sea
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