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Rok 2018
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Direct determination of cadaverine in the volatile fraction of aerobically stored chicken breast samples
PublikacjaTo supplement the currently used methods for poultry meat shelf life assessment, it might be necessary to develop a technique for rapid headspace analysis of volatiles with no prior sample preparation step. Biogenic amines, in particular cadaverine, are considered meat spoilage indicators. Described in this article are the results of a preliminary investigation of the applicability of proton transfer reaction mass spectrometry...
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Effect of osmolytes on the thermal stability of proteins: replica exchange simulations of Trp-cage in urea and betaine solutions
PublikacjaAlthough osmolytes are known to modulate the folding equilibrium, the molecular mechanism of their effect on thermal denaturation of proteins is still poorly understood. Here, we simulated the thermal denaturation of a small model protein (Trp-cage) in the presence of denaturing (urea) and stabilizing (betaine) osmolytes, using the all-atom replica exchange molecular dynamics simulations. We found that urea destabilizes Trp-cage...
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End-Of-Life Management of Photovoltaic Solar Modules
PublikacjaThe PV industry continues to push its credentials as a technology that addresses one of the fundamental challenges of our times – climate change. There are however two major concerns about this technology: first, the potential negative environmental impacts of energy used in the production stage and second, the possible shortage of the valuable materials in the future. The currently dominant semiconductor used in photovoltaic modules...
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Evaluation of Green Sample Preparation Techniques for Organic Compounds
PublikacjaNowadays, Green Analytical Chemistry (GAC) idea is of high importance, with impact on the rapid growth in the sample preparation area with special emphasis on sample preparation simplification, miniaturization and automation. Due to the fact that GAC is of high importance today, this study is focused on the evaluation of green sample preparation techniques for organic compounds. It is well known that sample preparation is considered...
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Experimental study of the effect of vertical acceleration component on the slope stability
PublikacjaThe paper deals with the stability of earth dams subjected to seismic and paraseismic excitations occurring in the close distance to the dam. The Newmark’s stability approach, classified as a simplified dynamic method, has been extended for two directional dynamic loading case and the evolution of the friction coefficient. The paper is focused on the experimental verification of the proposed method for harmonic and cyclic excitations...
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Extracting functional groups of ALLINI to design derivatives of FDA‐approved drugs: Inhibition of HIV‐1 integrase
PublikacjaHIV‐1 integrase (IN) is crucial for integration of viral DNA into the host genome and a promising target in development of antiretroviral inhibitors. In this work, six new compounds were designed by linking the structures of two different class of HIV‐1 IN inhibitors (active site binders and allosteric IN inhibitors (ALLINIs)). Among newly designed compounds, INRAT10b was found most potent HIV‐1 IN inhibitor considering different...
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Future of medicine: personalized oncology
PublikacjaUnderstanding genetic and epigenetic mechanisms of tumorigenesis allows identifying many vital mutations affected the formation of various malignancies. This led to the discovery of a new therapeutic approach, based on molecular mechanisms in the world of medicine, which is called personalized medicine (PM). This review aims to outline the state of the art of the personalized medicine in treatment, taking into account anti-cancer...
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Gospodarka zużytymi modułami fotowoltaicznymi
PublikacjaFotowoltaika rozwija się na całym świecie niezwykle intensywnie od wielu lat, oferując energię elektryczną wytworzoną w technologii, pozbawionej wszelkich emisji. Wraz z rosnącym wykorzystaniem instalacji fotowoltaicznych do konwersji energii promieniowania słonecznego na energię elektryczną coraz większego znaczenia nabiera problem zagospodarowania odpadów, powstałych podczas produkcji, eksploatacji i po zakończeniu użytkowania...
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Impact of inorganic ions and pH variations on toxicity and endocrine potential of selected environmentally relevant pharmaceuticals
PublikacjaAssessment of the impact of pharmaceutical residues on living organisms is a very complex subject. Apart from taking into account the toxicity of individual compounds, environmental factors should also be taken into account. In this paper, attempts were made to assess the impact of coexisting inorganic ions and changes in pH on the toxicity of ten selected pharmaceuticals. Two bioassays were used to measure the estrogenic and androgenic...
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Impact of selected drugs and their binary mixtures on the germination of Sorghum bicolor (sorgo) seeds
PublikacjaThe aim of this study was to assess the toxicological potential of binary drug mixtures and individual drugs under different pH conditions with different inorganic ion additions on the germination of Sorghum bicolor (sorgo) seeds. To assess whether the given drug mixtures were more phytotoxic than the individual compounds, concentration addition (CA) and independent action (IA) approaches were applied to estimate the predicted...
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KEYSTONE WG2: Activities and Results Overview on Keyword Search
PublikacjaIn this chapter we summarize activities and results achieved by the Keyword Search Working Group (WG2) of the KEYSTONE Cost Action IC1302. We present the goals of the WG2, its main activities in course of the action and provide a summary of the selected publications related to the WG2 goals and co-authored by WG2 members. We concludewith a summary of open research directions in the area of keyword search for structured data.
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Kluczowe zagadnienia procesu recyklingu zużytych modułów fotowoltaicznych I i II generacji
PublikacjaW ramach technologii fotowoltaicznych wyróżniamy obecnie trzy generacje ogniw fotowoltaicznych. Pierwsza z nich to ogniwa z mono- i polikrystalicznego krzemu (c-Si), druga obejmuje ogniwa wykonane na bazie technologii cienkowarstwowej, zarówno z krzemu amorficznego (a-Si) jak i diseleneku indowo-miedziowo-galowego (CIGS), tellurku kadmu (CdTe) oraz arsenku galu (GaAs). Trzecia generacja to najnowsze technologie, takie jak: organiczne...
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METODY KONTROLI OLEJOW SMAROWYCH EMITOWANYCH DO ŚRODOWISKA
PublikacjaEmitowane do środowiska oleje smarowe wykorzystywane w otwartych układach tnących, głowicach harwesterów, powinny zawierać wyłącznie biodegradowalne składniki. Składniki środków smarowych produkowanych z ropy naftowej wykazują negatywne oddziaływanie na środowisko i zdrowie, dlatego ich stosowanie w otwartych układach tnących powinno być zabronione, a użycie karane.
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Modal analysis of a fish-belly flap type of steel water gate
PublikacjaABSTRACT: The results of a modal analysis of the fish-belly flap type of steel water gate are presented in the paper. The analysis was conducted for a detailed numerical model of the structure using four-node quadrilateral shell elements. The study was focused on the examination of the influence of positioning of the flap gate and hydrostatic pressure of water on the eigenvalues and eigenmodes of the structure. The results of the study...
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Modal analysis of temporary steel grandstand equipped with different bracing systems
PublikacjaThe aim of this paper is to present the results of numerical analysis focused on temporary steel scaffolding grandstand. The investigation has been devoted to modal analysis where modes of free vibrations and corresponding natural frequencies have been estimated and compared. The structure was equipped with different types of stiffener members. One on them is a typical tubular stiffener, while the second one is spe-cially designed...
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Modelling the malware propagation in mobile computer devices
PublikacjaNowadays malware is a major threat to the security of cyber activities. The rapid develop- ment of the Internet and the progressive implementation of the Internet of Things (IoT) increase the security needs of networks. This research presents a theoretical model of malware propagation for mobile computer devices. It is based on the susceptible-exposed- infected-recovered-susceptible (SEIRS) epidemic model. The scheme is based on...
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Nowe rozwiązania metodyczne w zakresie badań oddechu stosowane w diagnostyce medycznej
PublikacjaSkład wydychanego powietrza zależny jest od stanu zdrowia pacjentów, dzięki czemu możliwe jest wykorzystanie analizy oddechu do celów diagnostycznych. Badanie oddechu może zostać użyte do oceny funkcjonowania narządów człowieka, a także do rozpoznania chorób, takich jak przewlekła obturacyjna choroba płuc, cukrzyca czy gruźlica. W artykule przedstawiono obecnie stosowane próbniki próbek oddechu, a także możliwość zastosowania nowych...
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Numerical investigation on dynamic performance of a multi-storey steel structure model and comparison with experimental results
PublikacjaShaking table testing is the most commonly adopted method to simulate earthquake forces. This approach allows us to analyze the dynamic performance and provides a valuable insight into the dynamics of building structures, which helps to improve their future safety and reliability. The present study aims to conduct a numerical evaluation of dynamic response of a multi-storey steel structure model, which was previously examined during...
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Numerical Investigation on Dynamic Performance of a Multi-storey Steel Structure Model and Comparison with Experimental Results
PublikacjaShaking table testing is the most commonly adopted method to simulate earthquake forces. This approach allows us to analyze the dynamic performance and provides a valuable insight into the dynamics of building structures, which helps to improve their future safety and reliability. The present study aims to conduct a numerical evaluation of dynamic response of a multi-storey steel structure model, which was previously examined during...
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Oleje smarowe do pilarek - problem dla miasta i środowiska
PublikacjaŚrodki smarowe eksploatowane są w różnych urządzeniach tnących. Olej smarowy uznaje się za element budowy maszyny, którego zadaniem jest stworzenie warstwy w postaci mikrofilmu pomiędzy dwoma poruszającymi się elementami urządzenia. Warstwa taka ma za zadanie zminimalizowanie tarcia, zapiekania się elementów maszyny oraz zmywanie nagarów i mikrocząstek zaokludowanych na powierzchni urządzenia. Zapobiega to m. in. pojawieniu się...
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Parametrized Local Reduced-Order Models With Compressed Projection Basis for Fast Parameter-Dependent Finite-Element Analysis
PublikacjaThis paper proposes an automated parametric local model-order reduction scheme for the expedited design of microwave devices using the full-wave finite-element method (FEM). The approach proposed here results in parameterized reduced-order models (ROMs) that account for the geometry and material variation in the selected subregion of the structure. In each subregion, a parameter-dependent projection basis is generated by concatenating...
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Polymeric Bearings as a new base isolation system suitable for mitigating machine-induced vibrations
PublikacjaThe present paper summarizes the preliminary results of the experimental shaking table investigation conducted in order to verify the effectiveness of a new base isolation system consisting of Polymeric Bearings in reducing strong horizontal machine-induced vibrations. Polymeric Bearing considered in the present study is a prototype base isolation system, which was constructed with the use of a specially prepared flexible polymer...
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Poultry meat freshness assessment based on the biogenic amines index
PublikacjaIn order to safeguard the well-being of the consumers, it is important to accurately determine the shelf life of poultry and poultry-based products. In this work, it was evaluated whether the measurement of the concentration of cadaverine, putrescine, histamine and tyramine can be used to assess the shelf-life of poultry meat stored in the different types of the containers. Based on the results it can be concluded that the collective...
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Praca bibliotekarza w erze cyfrowej: 20 darmowych programów i aplikacji do wykorzystania w bibliotece
PublikacjaArtykuł prezentuje 20 darmowych programów komputerowych, wykorzystywanych w Bibliotece Głównej Gdańskiego Uniwersytetu Medycznego. Przedstawione aplikacje mogą wzbogacić warsztat pracy bibliotekarzy, którzy zajmują się: tworzeniem szkoleń, edycją bibliotecznych stron internetowych oraz komunikacją z użytkownikami.
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Preconditioners with Low Memory Requirements for Higher-Order Finite-Element Method Applied to Solving Maxwell’s Equations on Multicore CPUs and GPUs
PublikacjaThis paper discusses two fast implementations of the conjugate gradient iterative method using a hierarchical multilevel preconditioner to solve the complex-valued, sparse systems obtained using the higher order finite-element method applied to the solution of the time-harmonic Maxwell equations. In the first implementation, denoted PCG-V, a classical V-cycle is applied and the system of equations on the lowest level is solved...
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Proces konwersji biomasy lignocelulozowej na drodze hydrolizy zasadowej i utleniania
PublikacjaDo najbardziej nowoczesnych i przyszłościowych metod chemicznych obróbki wstępnej masy lignocelulozowej zalicza się wykorzystanie ozonu. Ozon w znacznym stopniu degraduje ligninę, ale nie narusza struktury celulozy i hemicelulozy, która w rezultacie pozostaje dostępna do bezpośredniego kontaktu z enzymami i mikroorganizmami. Ozonoliza to możliwość prowadzenia procesu w warunkach temperatury i ciśnienia otoczenia. Nie ma miejsca...
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RDF dataset profiling - a survey of features, methods, vocabularies and applications
PublikacjaThe Web of Data, and in particular Linked Data, has seen tremendous growth over the past years. However, reuse and take-up of these rich data sources is often limited and focused on a few well-known and established RDF datasets. This can be partially attributed to the lack of reliable and up-to-date information about the characteristics of available datasets. While RDF datasets vary heavily with respect to the features related...
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Recovery of silver metallization from damaged silicon cells
PublikacjaMetallization is one of the key process steps to fabricate solar cells with high performance in a cost-effective way. Majority of photovoltaic solar cell manufacturing uses thick film screen print metallization with Ag containing paste to produce solar cells. The average lifetime of PV modules can be expected to be more than 25 years. The disposal of PV systems will become a problem in view of the continually increasing production...
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Reliable Greedy Multipoint Model-Order Reduction Techniques for Finite-Element Analysis
PublikacjaA new greedy multipoint model-order reduction algorithm for fast frequency-domain finite-element method simulations of electromagnetic problems is proposed. The location of the expansion points and the size of the projection basis are determined based on a rigorous error estimator. Compared to previous multipoint methods, the quality of the error estimator is significantly improved by ensuring the orthogonality of the projection...
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Single and Dual-GPU Generalized Sparse Eigenvalue Solvers for Finding a Few Low-Order Resonances of a Microwave Cavity Using the Finite-Element Method
PublikacjaThis paper presents two fast generalized eigenvalue solvers for sparse symmetric matrices that arise when electromagnetic cavity resonances are investigated using the higher-order finite element method (FEM). To find a few loworder resonances, the locally optimal block preconditioned conjugate gradient (LOBPCG) algorithm with null-space deflation is applied. The computations are expedited by using one or two graphical processing...
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Structural and dynamic insights on the EmrE protein with TPP+ and related substrates through molecular dynamics simulations
PublikacjaEmrE is a bacterial transporter protein that forms an anti-parallel homodimer with four transmembrane helices in each monomer. EmrE transports positively charged aromatic compounds, such as TPP+ and its derivatives. We performed molecular dynamics (MD) simulations of EmrE in complex with TPP+, MeTPP+, and MBTPP+ embedded in a membrane. The detailed molecular properties and interactions were analysed for all EmrE-ligand complexes....
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Study on 19th-century cast iron columns from the former financial office building in Kwidzyn
PublikacjaThe article presents the results for cast iron columns used as floor supports in the former financial office building in Kwidzyn (Poland).The stocktaking drawings provided the general and detailed data about the 19th century designer’s decisions. During the research, architectural and structural analysis was carried out. The graphics were used as a starting material for preparing 3D calculation models. The FEM-based numerical simulations...
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Synthesis of reduced graphene oxide nanosheets using nanofibers from methane and biogas thermal decomposition with various catalysts
PublikacjaReduced graphene oxide and graphene oxide (rGO, GO) were synthesised from carbon nanofibers, which were formed in catalytic thermal decomposition of methane (CDM) and biogas with different catalysts used in the process. The aim of the work was valorization of CDM carbon nanofiber products. The samples were characterized using Raman spectra, a scanning electron microscope and a transmission electron microscope. As a result, we observe...
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Text Categorization Improvement via User Interaction
PublikacjaIn this paper, we propose an approach to improvement of text categorization using interaction with the user. The quality of categorization has been defined in terms of a distribution of objects related to the classes and projected on the self-organizing maps. For the experiments, we use the articles and categories from the subset of Simple Wikipedia. We test three different approaches for text representation. As a baseline we use...
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The effectiveness of polymer adhesive in reduction of vibrations of structural members
PublikacjaIn this paper, the idea of using polymer adhesive as a damping layer is proposed. An experimental study of two aluminium cantilevered beams has been conducted. One of them presents a plain cantilevered beam, while the second one considers two aluminium beams bonded with a polymer adhesive of different thickness (0,5; 1,2; 1,75; 3,1 and 5 mm). The polymer adhesive considered in the study is a specially designed flexible...
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The structurally similar TRFH domain of TRF1 and TRF2 dimers shows distinct behaviour towards TIN2
PublikacjaThe telomere repeat binding-factor 1 and 2 (TRF1 and TRF2) proteins of the shelterin complex bind to duplex telomeric DNA as homodimers, and the homodimerization is mediated by their TRFH (TRF-homology) domains. We performed molecular dynamic (MD) simulations of the dimer forms of TRF1TRFH and TRF2TRFH in the presence/absence of the TIN2TBM (TIN2, TRF-interacting nuclear protein 2, TBM, TRF-binding motif) peptide. The MD results...
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Urine headspace analysis in medical diagnostics
PublikacjaThe analysis of the volatile organic compounds in the bodily fluids such as urine may provide useful information on the patients’ general health. The potential application of urine headspace analysis could facilitate the diagnostics of various diseases such as metabolic disorders, urinary tract diseases and gastrointestinal conditions. Described in this paper are the currently available techniques of urine sample analysis as well...
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Wpływ osmolitów na stabilność białek w oparciu o metodę dynamiki molekularnej
PublikacjaCelem niniejszej pracy było zbadanie molekularnego mechanizmu wpływu biologicznie znaczących związków, tzw. osmolitów na stabilność białek. Aby zweryfikować istniejące hipotezy i dostarczyć spójnego obrazu działania osmolitów na poziomie molekularnym, wykorzystano metodę dynamiki molekularnej do zasymulowania mechanicznej denaturacji modelowych białek – lizozymu i ubikwityny. W tym podejściu odtworzony został efekt stabilizujący...
Rok 2017
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An IoT-Based Computational Framework for Healthcare Monitoring in Mobile Environments
PublikacjaThe new Internet of Things paradigm allows for small devices with sensing, processing and communication capabilities to be designed, which enable the development of sensors, embedded devices and other ‘things’ ready to understand the environment. In this paper, a distributed framework based on the internet of things paradigm is proposed for monitoring human biomedical signals in activities involving physical exertion. The main...
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Analysis of Denoising Autoencoder Properties Through Misspelling Correction Task
PublikacjaThe paper analyzes some properties of denoising autoencoders using the problem of misspellings correction as an exemplary task. We evaluate the capacity of the network in its classical feed-forward form. We also propose a modification to the output layer of the net, which we called multi-softmax. Experiments show that the model trained with this output layer outperforms traditional network both in learning time and accuracy. We...
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Categorization of Cloud Workload Types with Clustering
PublikacjaThe paper presents a new classification schema of IaaS cloud workloads types, based on the functional characteristics. We show the results of an experiment of automatic categorization performed with different benchmarks that represent particular workload types. Monitoring of resource utilization allowed us to construct workload models that can be processed with machine learning algorithms. The direct connection between the functional...
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Communication and Load Balancing Optimization for Finite Element Electromagnetic Simulations Using Multi-GPU Workstation
PublikacjaThis paper considers a method for accelerating finite-element simulations of electromagnetic problems on a workstation using graphics processing units (GPUs). The focus is on finite-element formulations using higher order elements and tetrahedral meshes that lead to sparse matrices too large to be dealt with on a typical workstation using direct methods. We discuss the problem of rapid matrix generation and assembly, as well as...
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Comparing the Effectiveness of ANNs and SVMs in Forecasting the Impact of Traffic-Induced Vibrations on Building
PublikacjaTraffic - induced vibrations may cause damage to structural elements and may even lead to structural collapse. The aim of the article is to compare the effectiveness of algorithms in forecasting the impact of vibrations on buildings using the Machine Learning (ML) methods. The paper presents two alternative approaches by using Artificial Neural Networks (ANNs) and Support Vector Machines (SVMs). Factors that may affect traffic-induced...
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Cyanogenic Compounds and Estrogen Disruptors
PublikacjaBalanced diet consists largely of plants containing cyanogenic compounds in the form of the more common cyanogenic glycosides and sometimes lipids. Maize, wheat, rye, apples, barley, oats, sugar cane and yet many other plants consumed by humans contain cyanogenic compounds. However the risk of poisoning is negligible as it is very easy to remove the toxic HCN by grinding and drying in air or soaking in water and an additional...
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Damage-Involved Structural Pounding in Bridges under Seismic Excitation
PublikacjaDuring severe earthquakes, pounding between adjacent superstructure segments of highway elevated bridges was often observed. It is usually caused by the seismic wave propagation effect and may lead to significant damage. The aim of the present paper is to show the results of the numerical analysis focused on damage-involved pounding between neighbouring decks of an elevated bridge under seismic excitation. The analysis was carried...
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Experimental and numerical analysis of an aluminum cantilevered beam with polymer adhesive
PublikacjaIn this paper, experimental and numerical investigation on a composite cantilevered aluminum beam has been conducted. The subject of the study consists of two plain aluminum elements bonded with polymer adhesive of different thickness. It has been proven in the previous study that this kind of material has high damping properties. During an experimental investigation, value of damping ratios have been obtained. The aim of a numerical...
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Experimental Study on Effectiveness of a Prototype Seismic Isolation System Made of Polymeric Bearings
PublikacjaSeismic isolation is identified as one of the most popular and effective methods of protecting structures under strong dynamic excitations. Base isolators, such as Lead Rubber Bearings, High Damping Rubber Bearings, and Friction Pendulum Bearings, are widely used in practice in many earthquake-prone regions of the world to mitigate structural vibrations, and therefore minimize loss of life and property damage during seismic events....
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GPU-Accelerated 3D Mesh Deformation for Optimization Based on the Finite Element Method
PublikacjaThis paper discusses a strategy for speeding up the mesh deformation process in the design-byoptimization of high-frequency components involving electromagnetic field simulations using the 3D finite element method (FEM). The mesh deformation is assumed to be described by a linear elasticity model of a rigid body; therefore, each time the shape of the device is changed, an auxiliary elasticity finite-element problem must be solved....
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GPU-Accelerated LOBPCG Method with Inexact Null-Space Filtering for Solving Generalized Eigenvalue Problems in Computational Electromagnetics Analysis with Higher-Order FEM
PublikacjaThis paper presents a GPU-accelerated implementation of the Locally Optimal Block Preconditioned Conjugate Gradient (LOBPCG) method with an inexact nullspace filtering approach to find eigenvalues in electromagnetics analysis with higherorder FEM. The performance of the proposed approach is verified using the Kepler (Tesla K40c) graphics accelerator, and is compared to the performance of the implementation based on functions from...
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Herbaria i florilegia od XV do XVIII wieku ze zbiorów PAN Biblioteki Gdańskiej
PublikacjaPublikacja przedstawia wstępną analizę ilości i zawartości zespołu botanicznych druków tekstowych i graficznych, znajdujących się w historycznych zbiorach PAN Biblioteki Gdańskiej. W tekście uwzględniono także informacje o rozproszonej spuściźnie gdańskiej rodziny Breyne, znajdującej się obecnie w Forschungsbibliothek Gotha (Niemcy) oraz w Brenthurst Library w Johannesburgu (RPA), w tym o kolekcji 189 ilustracji botanicznych sióstr...