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Fatty acyl benzamido antibacterials based on inhibition of DnaK-catalyzed protein folding
PublicationWe have reported that the hsp70 chaperone DnaK from Escherichia coli might assist protein folding by catalyzing the cis/trans isomerization of secondary amide peptide bonds in unfolded or partially folded proteins. In this study a series of fatty acylated benzamido inhibitors of the cis/trans isomerase activity of DnaK was developed and tested for antibacterial effects in E. coli MC4100 cells. Nα-[Tetradecanoyl-(4-aminomethylbenzoyl)]-l-asparagine...
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Dehydration converts DsbG crystal diffraction from low to high resolution
PublicationDiffraction quality crystals are essential for crystallographic studies of protein structure, and the production of poorly diffracting crystals is often regarded as a dead end in the process. Here we show a dramatic improvement of poorly diffracting DsbG crystals allowing high-resolution diffraction data measurement. Before dehydration, the crystals are fragile and the diffraction pattern is streaky, extending to 10 Å resolution....
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Influence of reactive oxygen species during deposition of iron oxide films by high power impulse magnetron sputtering.
PublicationIron oxide films were deposited using high power impulse magnetron sputtering (HiPIMS) of an iron cathode in an argon/oxygen gas mixture at different gas pressures (0.5~Pa, 1.5~Pa, and 5.0~Pa). The HiPIMS system was operated at a repetition frequency $f = 100$~Hz with a duty cycle of 1~\%. A main goal is a comparison of film growth during conventional and electron cyclotron wave resonance-assisted HiPIMS. The deposition plasma...
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Effect of nitrogen doping on TiOxNy thin film formation at reactive high-power pulsed magnetron sputtering
PublicationThe paper is focused on a study of formation of TiOxNy thin films prepared by pulsed magnetron sputtering of metallic Ti target. Oxygen and nitrogen were delivered into the discharge in the form of reactive gases O2 and N2. The films were deposited by high-power impulse magnetron sputtering working with discharge repetition frequency f = 250 Hz at low (p = 0.75 Pa) and high (p = 10 Pa) pressure. The substrates were on floating...
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KU812 basophils express urocortin, CRH-R, MC1R and steroidogenic enzymes and secrete progesterone
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Spectroscopic Study of Plasma Polymerized a-C:H Films Deposited by a Dielectric Barrier Discharge
PublicationPlasma polymerized a-C:H thin films have been deposited on Si (100) and aluminum coated glass substrates by a dielectric barrier discharge (DBD) operated at medium pressure using C2Hm/Ar (m = 2, 4, 6) gas mixtures. The deposited films were characterized by Fourier transform infrared reflection absorption spectroscopy (FT-IRRAS), Raman spectroscopy, and ellipsometry. FT-IRRAS revealed the presence of sp3 and sp2 C–H stretching and...
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Discussion:Horizontal stress increase induced by deep vibratory compaction
PublicationDeep compaction control of granular material using the results of field tests. The analysis include the CPTU and DMT tests terformed before and after compaction works.
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Role of size scale of ZnO nanoparticles and microparticles on toxicity toward bacteria and osteoblast cancer cells
PublicationThe specific role of size scale, surface capping, and aspect ratio of zinc oxide (ZnO) particles on toxicity toward prokaryotic and eukaryotic cells was investigated. ZnO nano and microparticles of controlled size and mor- phology were synthesized by wet chemical methods. Cytotoxicity toward mammalian cells was studied using a human osteoblast cancer cell line and antibacterial activity using Gram-negative bacteria (Escherichia...
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A mobile loop order–disorder transition modulates the speed of chaperonin cycling
PublicationMolecular machines order and disorder polypeptides as they form and dissolve large intermolecular interfaces, but the biological significance of coupled ordering and binding has been established in few, if any, macromolecular systems. The ordering and binding of GroES co-chaperonin mobile loops accompany an ATP-dependent conformational change in the GroEL chaperonin that promotes client protein folding. Following ATP hydrolysis,...
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Effect of nitrogen doping on TiOxNythin film formation at reactive high-power pulsed magnetron sputtering
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Plasma diagnostics of low pressure high power impulse magnetron sputtering assisted by electron cyclotron wave resonance plasma
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Effect of mid-frequency discharge assistance on dual-high power impulse magnetron sputtering
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Molecular Strategy for Survival at a Critical High Temperature in Eschierichia coli
PublicationThe molecular mechanism supporting survival at a critical high temperature (CHT) in Escherichia coli was investigated. Genome-wide screening with a single-gene knockout library provided a list of genes indispensable for growth at 47°C, called thermotolerant genes. Genes for which expression was affected by exposure to CHT were identified by DNA chip analysis. Unexpectedly, the former contents did not overlap with the latter except...
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Physical properties of homogeneous TiO2 films prepared by high power impulse magnetron sputtering as a function of crystallographic phase and nanostructure
PublicationOptical, photo-electrochemical, crystallographic and morphological properties of TiO2 thin films prepared by high power impulse magnetron sputtering at low substrate temperatures (<65 ◦C) without post-deposition thermal annealing are studied. The film composition-anatase, rutile or amorphous TiO2-is adjusted by the pressure (p ∼ 0.75-15 Pa) in the deposition chamber. The different crystallographic phases were determined with grazing...
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Physical properties of homogeneous TiO2films prepared by high power impulse magnetron sputtering as a function of crystallographic phase and nanostructure
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Current and future emissions of selected heavy metals to the atmosphere from anthropogenic cources in Europe
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Current and future emissions of selected heavy metals to the atmosphere from anthropogenic cources in Europe
PublicationPrzedstawiono wyniki obliczeń emisji As, Cd, Cr, Ni i Pb do powietrza ze źródeł antropogennych w Europie. Obecnie spalanie paliw jest głównym źródłem emisji As, Cd, Cr i Ni (powyżej 50 % ogólnej emisji tych metali), natomiast spalanie benzyny jest głównym źródłem emisji Pb. Zaobserwowano ciągłą redukcje emisji tych metali w Europie w ciagu ostatnich 40 lat. Powiększający się stan wiedzy nt. źródeł, emisji oraz transportu i zachowania...
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Microbe Power and Diversity: in Health and Society
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Instrumental Techniques in Environmental Biology - wykład
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Recent advances in transcription regulation
e-Learning CoursesRecent advances in transcription regulation
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Microbe Power and Diversity: in Health and Society - wykład
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A European Research Agenda for Somatic Symptom Disorders, Bodily Distress Disorders, and Functional Disorders: Results of an Estimate-Talk-Estimate Delphi Expert Study
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PODSTAWY BIOLOGII - wykład
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Ecological basis of environmental protection
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Ekologiczne podstawy ochrony środowiska
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Characterization of a new essential TPR protein LapB and a new non-coding RNA, which together regulate the assembly of endotoxin.
ProjectsProject realized in Faculty of Chemistry according to UMO-2013/11/B/NZ2/02641 agreement from 2014-07-09
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Requirement of conserved folding catalysts in the functionality of several essential proteins, metabolic pathways and key virulence factors.
ProjectsProject realized in Laboratory of Bacterial Genetics according to UMO-2017/25/B/NZ6/02021 agreement from 2018-01-03
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Podstawy biologii z elementami biologii komorki
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Podstawy biologii z elementami biologii komórki wykład 2022/2023
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Podstawy biologii z elementami biologii komórki - wykład
e-Learning CoursesPodstawy biologii z elementami biologii komórki - wykład (2021/2022)
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Podstawy biologii z elementami biologii komórki - wykład 2023/2024
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Podstawy biologii z elementami biologii komórki wykład 2024/2025
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[NCh-bio] Advances in Biotechnology: Protein Folding and Assembly
e-Learning Courses{mlang pl} Dyscyplina: nauki chemiczne Zajęcia obowiązkowe dla doktorantów I i II roku z obszaru biotechnologii Prowadzący: dr hab. Gracjana Klein-Raina, prof. PG Liczba godzin: 15 Forma zajęć: wykład {mlang} {mlang en} Discipline: chemical sciences Obligatory course for 1st and 2nd-year PhD students from biotechnology area Academic teachers: dr hab. Gracjana Klein-Raina, prof. PG Total hours of training: 15 teaching...
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Strukturalna i funkcjonalna charakterystyka izomeraz peptydyloprolinowych-uniwersalnie konserwowanych białkowych katalizatorów fałdowania
ProjectsProject realized in Faculty of Chemistry according to UMO-2011/03/B/NZ1/02825 agreement from 2015-08-02
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Investigating the coordinated regulation of lipopolysaccharide (LPS) and phospholipid amounts by the essential LPS assembly proteins LapB/LapC and the involvement of a new thioesterase
ProjectsProject realized in Laboratory of Bacterial Genetics according to UMO-2023/49/B/NZ1/01986 agreement
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Laboratorium biologii komórki 2021/2022
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Laboratorium biologii komórki 2022/2023
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Laboratorium biologii komórki 2023/2024
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Translocations activating IRF4 identify a subtype of germinal center-derived B-cell lymphoma affecting predominantly children and young adults
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Data from environmental sensors installed in two locations
Open Research DataThe dataset contains data gathered from environmental sensors installed in two locations:
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Application of commercial microwave links (CMLs) attenuation for quantitative estimation of precipitation
PublicationPrecipitation estimation models are typically sourced by rain gauges, weather radars and satellite observations. A relatively new technique of precipitation estimation relies on the network of Commercial Microwave Links (CMLs) employed for cellular communication networks: the rain-inducted attenuation in the links enables the precipitation estimation. In the paper, it is analysed to what extent the precipitation derived from CML...
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Permanent traffic counting stations - Expressway S6 in Gdansk (dataset containing 5-min aggregated traffic data and weather information)
Open Research DataThe data includes traffic data from permanent traffic count station located on the expressway S6 in the Tri-City Agglomeration area in Poland. The data covers the three year period between 2014 and 2017 and one direction of traffic (southbound).
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A new approach to design of weather disruption-tolerant wireless mesh networks
PublicationWireless Mesh Networks, offering transmission rates of 1–10 Gb/s per a millimeter-wave link (utilizing the 71–86 GHz band) seem to be a promising alternative to fiber optic backbone metropolitan area networks because of significantly lower costs of deployment and maintenance. However, despite providing high transmission rates in good weather conditions, high-frequency wireless links are very susceptible to weather disruptions....
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MATHEMATICAL MODELING OF FLOOD MANAGEMENT SYSTEM IN THE CITY OF GDAŃSK, ORUŃSKI STREAM CASE STUDY
PublicationAim of the study This study analyses the efficiency of flood protection in a small urban catchment, based on a system of small reservoirs. Material and methods To assess the flood routing and surge reduction, a mathematical model of the river catchment was implemented. This was a lumped hydrological model, based on the SCS-CN method. Channel routing was performed, using kinematic wave equation. The sub-catchments have been determined...
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DETERMINATION OF THE EFFECT OF ENVIRONMENTAL FACTORS ON THE CORROSION OF WATER DISTRIBUTION SYSTEM BASED ON ANALYSIS OF ON-LINE CORROSION MONITORING RESULTS
PublicationCorrosion of water distribution system is a significant issue causing problems with quality, safety and continuity of distribution. The changes of corrosion rates of the water distribution systems in Cracow made of carbon steel were investigated by analysis of online corrosion monitoring system results. Corrosion rates were determined using the linear polarization method. The impact of rain, temperatures, conductivity, dissolved...
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SEDIMENT DEPOSITION IN RESERVOIRS IN URBAN BASIN
PublicationIn recent years Gdańsk had sustained economic and social losses due to severe flash floods coming down from moraine hills. The first flood occurred in July 2001 and the second in July 2016. Both events were caused by intense and long rainfall characterized by different from each other rain intensity in time. Among other Gdansk’s streams the Oliwski Stream has the most extended flood protection system consist of 15 small retention...
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Investigating the Impact of Weather Conditions and Time of Day on Traffic Flow Characteristics
PublicationAdverse weather such as rain, snow, and fog may significantly reduce visibility or change adhesion properties and, as a consequence, affect drivers’ sense of safety, driving comfort, and their reaction to a changing driving environment (i.e., lower speed and increased headways). The changed behavior of individual drivers affects both traffic flow characteristics, that is, average speed and headways, and parameters related to highway...
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Enhancing Resilience of FSO Networks to Adverse Weather Conditions
PublicationOptical wireless networks realized by means of gigabit optical wireless communication (OWC) systems are becoming, in a variety of applications, an important alternative, or a complementary solution, to their fiber-based counterparts. However, performance of the OWC systems can be considerably degraded in periods of unfavorable weather conditions, such as heavy fog, which temporarily reduce the effective capacity of the network....
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Review on the quality of sediments from the stormwater drainage system in the urban area
PublicationThe main task of the stormwater drainage system is a safe drainage of rainwater and snowmelt from the urban area to the receiver. The flow of rain water in the drainage pipes is directly related with the formation of sediments in the whole stormwater system. In addition, pollutants from land runoff get adsorbed to the sediments. The sludge is mainly formed in those elements of stormwater drainage system, wherein the flow conditions...
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Runoff Water
PublicationThis entry summarizes the current state of knowledge on the role of atmospheric pollutants' transport to the surface and transformations of wet deposition on contact with various surfaces. Runoff waters are one of the forms in which precipitation reaches the groundwater and surface water. They are formed when rain or melting snow washes the surfaces of roofs, highways, agricultural areas, or tree canopies. Pollutants present in...