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Search results for: liver vessel segmentation
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Computational Methods for Liver Vessel Segmentation in Medical Imaging: A Review
PublicationThe segmentation of liver blood vessels is of major importance as it is essential for formulating diagnoses, planning and delivering treatments, as well as evaluating the results of clinical procedures. Different imaging techniques are available for application in clinical practice, so the segmentation methods should take into account the characteristics of the imaging technique. Based on the literature, this review paper presents...
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Adaptive Hounsfield Scale Windowing in Computed Tomography Liver Segmentation
PublicationIn computed tomography (CT) imaging, the Hounsfield Unit (HU) scale quantifies radiodensity, but its nonlinear nature across organs and lesions complicates machine learning analysis. This paper introduces an automated method for adaptive HU scale windowing in deep learning-based CT liver segmentation. We propose a new neural network layer that optimizes HU scale window parameters during training. Experiments on the Liver Tumor...
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Comparison of image pre-processing methods in liver segmentation task
PublicationAutomatic liver segmentation of Computed Tomography (CT) images is becoming increasingly important. Although there are many publications in this field there is little explanation why certain pre-processing methods were utilised. This paper presents a comparison of the commonly used approach of Hounsfield Units (HU) windowing, histogram equalisation, and a combination of these methods to try to ascertain what are the differences...
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Creating a radiological database for automatic liver segmentation using artificial intelligence.
PublicationImaging in medicine is an irreplaceable stage in the diagnosis and treatment of cancer. The subsequent therapeutic effect depends on the quality of the imaging tests performed. In recent years we have been observing the evolution of 2D to 3D imaging for many medical fields, including oncological surgery. The aim of the study is to present a method of selection of radiological imaging tests for learning neural networks.
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Comparison of Selected Neural Network Models Used for Automatic Liver Tumor Segmentation
PublicationAutomatic and accurate segmentation of liver tumors is crucial for the diagnosis and treatment of hepatocellular carcinoma or metastases. However, the task remains challenging due to imprecise boundaries and significant variations in the shape, size, and location of tumors. The present study focuses on tumor segmentation as a more critical aspect from a medical perspective, compared to liver parenchyma segmentation, which is the...
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Hypericum alpestre extract exhibits in vitro and in vivo anticancer properties by regulating the cellular antioxidant system and metabolic pathway of L‐arginine
PublicationConventional treatment methods are not effective enough to fight the rapid increase in cancer cases. The interest is increasing in the investigation of herbal sources for the development of new anticancer therapeutics. This study aims to investigate the antitumor capacity of Hypericum alpestre (H. alpestre) extract in vitro and in vivo, either alone or in combination with the inhibitors of the L‐arginine/polyamine/nitric oxide...
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Instance segmentation of stack composed of unknown objects
PublicationThe article reviews neural network architectures designed for the segmentation task. It focuses mainly on instance segmentation of stacked objects. The main assumption is that segmentation is based on a color image with an additional depth layer. The paper also introduces the Stacked Bricks Dataset based on three cameras: RealSense L515, ZED2, and a synthetic one. Selected architectures: DeepLab, Mask RCNN, DEtection TRansformer,...
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Vessel Plus
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MEAN SHIFT BASED SEGMENTATION FOR BLEEDING REGIONS IN ENDOSCOPIC VIDEOS
PublicationWith a set of 38 manually marked bleeding regions form endoscopic videos, the authors attempted to find an optimal image segmentation method for reproducing doctor’s markup. Mean shift segmentation combined with HSV histogram segmentation were used as a segmentation method, which was then optimized by tuning the parameters of the method using global optimization algorithm. A target function for measuring the quality of segmentation was...
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Ensembling noisy segmentation masks of blurred sperm images
PublicationBackground: Sperm tail morphology and motility have been demonstrated to be important factors in determining sperm quality for in vitro fertilization. However, many existing computer-aided sperm analysis systems leave the sperm tail out of the analysis, as detecting a few tail pixels is challenging. Moreover, some publicly available datasets for classifying morphological defects contain images limited only to the sperm head. This...
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Remote Sensing in Vessel Detection and Navigation
PublicationThe Special Issue (SI) “Remote Sensing in Vessel Detection and Navigation” highlighted a variety of topics related to remote sensing with navigational sensors. The sequence of articles included in this Special Issue is in line with the latest scientific trends. The latest developments in science, including artificial intelligence, were used. The 15 papers (from 23 submitted) were published.
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Review of Segmentation Methods for Coastline Detection in SAR Images
PublicationSynthetic aperture radar (SAR) images acquired by airborne sensors or remote sensing satellites contain the necessary information that can be used to investigate various objects of interest on the surface of the Earth, including coastlines. The coastal zone is of great economic importance and is also very densely populated. The intensive and increasing use of coasts and changes of coastlines motivate researchers to try to assess...
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Innovative design of hybrid powered inland vessel
PublicationOne of the most demanding task for European countries is rational transportation system taking into account fuel efficient and ecological propulsion. The paper presents innovative design of hybrid powered inland vessel. The most important aspects regarding new design and technical solutions are being presented, including numerical and experimental research on hull form. Combined diesel-electric propulsion supported by solar panel...
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Deep Instance Segmentation of Laboratory Animals in Thermal Images
PublicationIn this paper we focus on the role of deep instance segmentation of laboratory rodents in thermal images. Thermal imaging is very suitable to observe the behaviour of laboratory animals, especially in low light conditions. It is an non-intrusive method allowing to monitor the activity of animals and potentially observe some physiological changes expressed in dynamic thermal patterns. The analysis of the recorded sequence of thermal...
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SegSperm - a dataset of sperm images for blurry and small object segmentation
Open Research DataMany deep learning applications require figure-ground segmentation. The performance of segmentation models varies across modalities and acquisition settings.
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Vitamin K status in cystic fibrosis patients with liver cirrhosis
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Deep learning based thermal image segmentation for laboratory animals tracking
PublicationAutomated systems for behaviour classification of laboratory animals are an attractive alternative to manual scoring. However, the proper animals separation and tracking, especially when they are in close contact, is the bottleneck of the behaviour analysis systems. In this paper, we propose a method for the segmentation of thermal images of laboratory rats that are in close contact during social behaviour tests. For this, we are...
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Accelerating Video Frames Classification With Metric Based Scene Segmentation
PublicationThis paper addresses the problem of the efficient classification of images in a video stream in cases, where all of the video has to be labeled. Realizing the similarity of consecutive frames, we introduce a set of simple metrics to measure that similarity. To use these observations for decreasing the number of necessary classifications, we propose a scene segmentation algorithm. Performed experiments have evaluated the acquired...
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Diamond Nanofilm Normalizes Proliferation and Metabolism in Liver Cancer Cells
PublicationPurpose: Surgical resection of hepatocellular carcinoma can be associated with recurrence resulting from the degeneration of residual volume of the liver. The objective was to assess the possibility of using a biocompatible nanofilm, made of a colloid of diamond nanoparticles (nfND), to fill the side after tumour resection and optimize its contact with proliferating liver cells, minimizing their cancerous transformation. Methods:...
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Image Segmentation of MRI image for Brain Tumor Detection
Publicationthis research work presents a new technique for brain tumor detection by the combination of Watershed algorithm with Fuzzy K-means and Fuzzy C-means (KIFCM) clustering. The MATLAB based proposed simulation model is used to improve the computational simplicity, noise sensitivities, and accuracy rate of segmentation, detection and extraction from MR...
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Semantic segmentation training using imperfect annotations and loss masking
PublicationOne of the most significant factors affecting supervised neural network training is the precision of the annotations. Also, in a case of expert group, the problem of inconsistent data annotations is an integral part of real-world supervised learning processes, well-known to researchers. One practical example is a weak ground truth delineation for medical image segmentation. In this paper, we have developed a new method of accurate...
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Three-objective antenna optimization by means of kriging surrogates and domain segmentation
PublicationIn this paper, an optimization framework for multi-objective design of antenna structures is discussed which exploits data-driven surrogates, a multi-objective evolutionary algorithm, response correction techniques for design refinement, as well as generalized domain segmentation. The last mechanism is introduced to constrain the design space region subjected to sampling, which permits reduction of the number of training data samples...
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Comparative study of numerical modelling and experimental investigation for vessel-docking operations
PublicationA comparative study between numerical modelling and experimental investigation is performed to validate the developed numerical method for simulating floating dock operations with a vessel on board. Both model-scale and full-scale experimental tests are performed on floating docks with a vessel on board, and the draughts using draught meters, floating positions and bending of the floating dock are measured. The present numerical...
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Examining Quality of Hand Segmentation Based on Gaussian Mixture Models
PublicationResults of examination of various implementations of Gaussian mix-ture models are presented in the paper. Two of the implementations belonged to the Intel’s OpenCV 2.4.3 library and utilized Background Subtractor MOG and Background Subtractor MOG2 classes. The third implementation presented in the paper was created by the authors and extended Background Subtractor MOG2 with the possibility of operating on the scaled version of...
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Scene Segmentation Basing on Color and Depth Images for Kinect Sensor
PublicationIn this paper we propose a method for segmenting single images from Kinect sensor by considering both color and depth information. The algorithm is based on a series of edge detection procedures designed for particular features of the scene objects. RGB and HSV color planes are separately analyzed in the first step with Canny edge detector, resulting in overall color edges mask. In depth images both clear boundaries and smooth...
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Breast MRI segmentation by deep learning: key gaps and challenges
PublicationBreast MRI segmentation plays a vital role in early diagnosis and treatment planning of breast anomalies. Convolutional neural networks with deep learning have indicated promise in automating this process, but significant gaps and challenges remain to address. This PubMed-based review provides a comprehensive literature overview of the latest deep learning models used for breast segmentation. The article categorizes the literature...
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Analysis of data fusion algorithms for the vessel with the dynamic positioning system
PublicationThe dynamic positioning (DP) system on the vessel is operated to control the position and heading of the vessel with the use of propellers and thrusters installed on the board. On DP vessels redundant measurement systems of position, heading and the magnitude and direction of environmental forces are required for safety at sea. In this case, a fusion of data is needed from individual measurement devices. The article proposes a...
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Segmentation-Based BI-RADS ensemble classification of breast tumours in ultrasound images
PublicationBackground: The development of computer-aided diagnosis systems in breast cancer imaging is exponential. Since 2016, 81 papers have described the automated segmentation of breast lesions in ultrasound images using arti- ficial intelligence. However, only two papers have dealt with complex BI-RADS classifications. Purpose: This study addresses the automatic classification of breast lesions into binary classes (benign vs. ma- lignant)...
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Universal autonomous control and management system for multipurpose unmanned surface vessel
PublicationThe paper presents design, structure and architecture of the Universal Autonomous Control and Management System (UACAMS) for multipurpose unmanned surface vessel. The system was designed, installed and implemented on the multipurpose platform - unmanned surface vessel named HydroDron. The platform is designed to execute hydrographic survey missions with multi-variant configuration of the survey system (payload? ) including multi-beam...
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Sailing Vessel Routing Considering Safety Zone and Penalty Time for Altering Course
PublicationIn this paper we introduce new model for simulation sea vessel routing. Besides a vessel types (polar diagram) and weather forecast, travel security and the number of maneuvers are considered. Based on these data both the minimal travelling costs and the minimal processing time are found for different vessels and different routes. To test our model the applications SailingAssistance wad improved. The obtained results shows that...
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ADAPTIVE BACKSTEPPING TRACKING CONTROL FOR OVER-ACTUATED DP MARINE VESSEL WITH INERTIA UNCERTAINTIES
PublicationDesigning a tracking control system for an over-actuated dynamic positioning marine vessel in the case of insufficient information on environmental disturbances, hydrodynamic damping, Coriolis forces and vessel inertia characteristics is considered. The designed adaptive MIMO backstepping control law with control allocation is based on Lyapunov control theory for cascaded systems to guarantee stabilization of the marine vessel...
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Urban scene semantic segmentation using the U-Net model
PublicationVision-based semantic segmentation of complex urban street scenes is a very important function during autonomous driving (AD), which will become an important technology in industrialized countries in the near future. Today, advanced driver assistance systems (ADAS) improve traffic safety thanks to the application of solutions that enable detecting objects, recognising road signs, segmenting the road, etc. The basis for these functionalities...
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Application Of Generative Adversarial Network for Data Augmentation and Multiplication to Automated Cell Segmentation of the Corneal Endothelium
PublicationConsidering the automatic segmentation of the endothelial layer, the available data of the corneal endothelium is still limited to a few datasets, typically containing an average of only about 30 images. To fill this gap, this paper introduces the use of Generative Adversarial Networks (GANs) to augment and multiply data. By using the ``Alizarine'' dataset, we train a model to generate a new synthetic dataset with over 513k images....
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Leveraging spatio-temporal features for joint deblurring and segmentation of instruments in dental video microscopy
PublicationIn dentistry, microscopes have become indispensable optical devices for high-quality treatment and micro-invasive surgery, especially in the field of endodontics. Recent machine vision advances enable more advanced, real-time applications including but not limited to dental video deblurring and workflow analysis through relevant metadata obtained by instrument motion trajectories. To this end, the proposed work addresses dental...
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Medical Image Segmentation Using Deep Semantic-based Methods: A Review of Techniques, Applications and Emerging Trends
PublicationSemantic-based segmentation (Semseg) methods play an essential part in medical imaging analysis to improve the diagnostic process. In Semseg technique, every pixel of an image is classified into an instance, where each class is corresponded by an instance. In particular, the semantic segmentation can be used by many medical experts in the domain of radiology, ophthalmologists, dermatologist, and image-guided radiotherapy. The authors...
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Sperm segmentation and abnormalities detection during the ICSI procedure using machine learning algorithms
Publication(1) About 15-20% of couples struggle with the problem of infertility. 30 to 40% of these cases are caused by abnormalities in the structure and motility of sperm. Sometimes the only possibility for such people is to use the procedure of artificial insemination. CASA systems are used to increase the efficiency of this procedure by selecting the appropriate sperm cell. (2) This paper presents an approach to the sperm classification...
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Deep Learning-Based Cellular Nuclei Segmentation Using Transformer Model
PublicationAccurate segmentation of cellular nuclei is imperative for various biological and medical applications, such as cancer diagnosis and drug discovery. Histopathology, a discipline employing microscopic examination of bodily tissues, serves as a cornerstone for cancer diagnosis. Nonetheless, the conventional histopathological diagnosis process is frequently marred by time constraints and potential inaccuracies. Consequently, there...
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Onboard Energy Storage and Power Management Systems forAll-Electric Cargo Vessel Concept
PublicationThis paper presents an innovative approach to the design of a forthcoming, fully electric-powered cargo vessel. This work begins by defining problems that need to be solved when designingvessels of this kind. Using available literature and market research, a solution for the design of apower management system and a battery management system for a cargo vessel of up to 1504 TEUcapacity was developed. The proposed solution contains...
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Liver Cancer
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Gut and Liver
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LIVER INTERNATIONAL
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Liver Research
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LIVER TRANSPLANTATION
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Learning sperm cells part segmentation with class-specific data augmentation
PublicationInfertility affects around 15% of couples worldwide. Male fertility problems include poor sperm quality and low sperm count. The advanced fertility treatment methods like ICSI are nowadays supported by vision systems to assist embryologists in selecting good quality sperm. Computer-Assisted Semen Analysis (CASA) provides quantitative and qualitative sperm analysis concerning concentration, motility, morphology, vitality, and fragmentation....
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Conceptual design of shore station for an innovative waste collecting vessel
PublicationMarine environment protection legislation in the EU requires ships to return waste they generate on voyages to waste-reception facilities in ports. In many harbors there is a need to expand the port infrastructure to enable the operation of Waste Collecting Vessels (WCVs). In addition, these vessels can perform new functions of cleaning port basins and adjacent waterways. A novelty in the presented research on the conceptual design...
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A novel approach exploiting properties of convolutional neural networks for vessel movement anomaly detection and classification
PublicationThe article concerns the automation of vessel movement anomaly detection for maritime and coastal traffic safety services. Deep Learning techniques, specifically Convolutional Neural Networks (CNNs), were used to solve this problem. Three variants of the datasets, containing samples of vessel traffic routes in relation to the prohibited area in the form of a grayscale image, were generated. 1458 convolutional neural networks with...
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The Analysis of Container Vessel Service Efficiency in the Aspect of Berth and Handling Equipment Usage in Polish Ports
PublicationThe paper analyses the efficiency of container vessel service in Polish container terminals taking under considerations different berth layouts and handling equipment.
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Accelerated multi-objective design optimization of antennas by surrogate modeling and domain segmentation
PublicationMulti-objective optimization yields indispensable information about the best possible design trade-offs of an antenna structure, yet it is challenging if full-wave electromagnetic (EM) analysis is utilized for performance evaluation. The latter is a necessity for majority of contemporary antennas as it is the only way of achieving acceptable modeling accuracy. In this paper, a procedure for accelerated multi-objective design of...
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Probability modelling of vessel collisions
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KEMR-Net: A Knowledge-Enhanced Mask Refinement Network for Chromosome Instance Segmentation
PublicationThis article proposes a mask refinement method for chromosome instance segmentation. The proposed method exploits the knowledge representation capability of Neural Knowledge DNA (NK-DNA) to capture the semantics of the chromosome’s shape, texture, and key points, and then it uses the captured knowledge to improve the accuracy and smoothness of the masks. We validate the method’s effectiveness on our latest high-resolution chromosome...