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Search results for: real-time pcr
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Specific detection of Alternaria alternata by PCR and real-time PCR
PublicationFungi of Alternaria genus are cosmopolitan organisms, which spores can be found in the air, soil, water, clothing and food. They commonly occur as saprotrophs on the plant remains, contributing to the decomposition of organic matter. Additionally, they are components of the normal human and animal skin flora. Alternaria spp. are also known human allergens, causing hay fever and allergic reactions that can lead to the development...
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Real-Time PCR: molecular technique of many applications
PublicationReal-Time PCR is a sensitive DNA amplification technique initially applied in genetics and molecular biology. It enables in vivo copying of the selected DNA fragment (flanked by two primers) by the thermostable polymerase (in the presence of magnesium ions and deoxynucleotide triphosphates) and simultaneous measurement of the fluorescence. For one or more specific sequences in a DNA sample, real-time PCR enables both detection...
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PCR and real-time PCR assays to detect fungi of Alternaria alternata species
PublicationFungi of the Alternaria genus are mostly associated with allergic diseases. However, with a growing number of immunocompromised patients, these fungi, with A. alternata being the most prevalent one, are increasingly recognized as etiological agents of infections (phaeohyphomycoses) in humans. Nowadays, identification of Alternaria spp. requires their pure culture and is solely based on morphological criteria. Clinically, Alternaria...
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Real-time PCR approach in dermatophyte detection and Trichophyton rubrum identification
PublicationDermatophytes are keratinophilic molds that infect human hair, nails and skin. Diagnosis of dermatophytosis is based on morphological, serological and biochemical features. However, identification is difficult and laborious due to similarities between microorganisms. Thus, there is considerable interest to develop mycological diagnostic procedures based on molecular biology methods. In this study, fast, two-step DNA extraction...
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PCR and real-time PCR approaches to the identification of Arthroderma otae species Microsporum canis and Microsporum audouinii/Microsporum ferrugineum
PublicationObjectives The identification of species in the Arthroderma otae complex is essential to determine the origin of infection and to eliminate the risk of transmission. Microsporum canis is a zoophilic species, whereas Microsporum audouinii and Microsporum ferrugineum are anthropophilic species. In this paper, we propose alternative methods that permit species-specific identification of both anthropophilic and zoophilic members of...
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System do diagnostyki dermatofitowych zakażeń powierzchniowych oparty na technice Real-Time PCR
PublicationDermatofity należą do blisko spokrewnionej grupy grzybów, które wykazują wysokie powinowactwo do skeratynizowanych tkanek. Cecha ta czyni je odpowiedzialnymi za powierzchniowe grzybice skóry, paznokci oraz włosów. Szacuje się, iż nawet do 20% ludzi na całym świecie dotkniętych jest infekcjami powodowanymi przez dermatofity. Ich leczenie wymaga długotrwałego zastosowania leków przeciwgrzybiczych. W celu dobrania odpowiedniego leczenia...
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Real-time simulation in non real-time environment
PublicationSimulation in real-time is a very useful tool because of didactical and practical benefits. Very important benefit of real-time simulation is a fact that operator’s decision can be taken into account in the same time scale as the real system would work. This enables construction of simulators, and opportunity to test control algorithms in Hardware in The Loop scheme using target industrial equipment. Professional real-time environments...
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Dichotomous design of real-time systems
PublicationW pracy prezentuje się i analizuje dwie podstawowe metody projektowania komputerowych systemów czasu rzeczywistego, spełniających rozmaite zadania z zakresu automatyki, sterowania, nadzoru i diagnostyki, w których następuje interakcja komputera z obiektami i procesami przemysłowymi, które posiadają naturę ciągłą (pozwalającą na ścisłą matematyczną charakteryzację w czasie ciągłym). Definiuje się podejście uwarunkowane kontekstowo...
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A non-uniform real-time speech time-scale stretching method
PublicationAn algorithm for non-uniform real-time speech stretching is presented. It provides a combination of typical SOLA algorithm (Synchronous Overlap and Add ) with the vowels, consonants and silence detectors. Based on the information about the content and the estimated value of the rate of speech (ROS), the algorithm adapts the scaling factor value. The ability of real-time speech stretching and the resultant quality of voice were...
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Web-based real-time simulation system
PublicationThe paper presents the development of a simulation system composed of a real-time plant simulator with real-time controller included in the software-in-the-loop structure using web-based communication. The client-server architecture build in a TCP/IP network environment was introduced, where the server is a computing unit for real-time high temporal resolution plant simulation (and optionally also as controllers' platform) and...
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Improved method for real-time speech stretching
Publicationn algorithm for real-time speech stretching is presented. It was designed to modify input signal dependently on its content and on its relation with the historical input data. The proposed algorithm is a combination of speech signal analysis algorithms, i.e. voice, vowels/consonants, stuttering detection and SOLA (Synchronous-Overlap-and-Add) based speech stretching algorithm. This approach enables stretching input speech signal...
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Real-time speech-rate modification experiments
PublicationAn algorithm designed for real-time speech time scale modification (stretching) is proposed, providing a combination of typical synchronous overlap and add based time scale modification algorithm and signal redundancy detection algorithms that allow to remove parts of the speech signal and replace them with the stretched speech signal fragments. Effectiveness of signal processing algorithms are examined experimentally together...
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Real-time simulator of agricultural biogas plant
PublicationThis article presents a real-time simulator of an agricultural biogas plant. The project contains biogas and biomass circuits simulation, as well as heating circuit simulation with a complete control system and visualization interface of the whole process. The software tool used to simulate the plant work is CFD (Computational Fluid Dynamics), which enables a user to create and test simulation objects based on fundamental physical...
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A Method of Real-Time Non-uniform Speech Stretching
PublicationDeveloped method of real-time non-uniform speech stretching is presented.The proposed solution is based on the well-known SOLA algorithm(Synchronous Overlap and Add). Non-uniform time-scale modification isachieved by the adjustment of time scaling factor values in accordance with thesignal content. Dependently on the speech unit (vowels/consonants), instantaneousrate of speech (ROS), and speech signal presence, values of the scalingfactor...
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Real-time generator of AIS/ARPA/GPS data
PublicationThe paper presents a real-time generator of AIS/ARPA/GPS position data in the standardized NMEA 0183 text format. Position data are produced by a set of various types of ships simulated on the Polish part of the Baltic Sea and are generated on defined IP/UDP addresses and RS-232 ports. In the simulation an extensive set of input parameters is taken into account including the number of particular types of ships, their dimensions,...
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UAV Design and Construction for Real Time Photogrammetry and Visual Navigation
PublicationA unmanned aerial vehicles applications in photogrammetry have increased rapidly last years. A fast data gathering and processing in real time in some cases become crucial and desired in some application. In the paper, a real time solution is proposed. A real time photogrammetry from UAV is proposed, where image data are gathered and processed on board UAV and finally reconstructed 3D model and measurements are delivered. The paper...
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On various modelling approaches to real-time visualisation of blood flow
PublicationThis paper reviews various modelling approaches to real-time visualisation of blood flow. These include classic, macroscale approach based on the momentum conservation equation together with a proper constitutive equation. Moreover, modern micro- and mesoscale approaches, such as molecular dynamics and dissipative particle dynamics, are discussed. Advantages and disadvantages of the discussed methods are highlighted with particular...
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Real-time speech streching for supporting hearing impaired schoolchildren
PublicationA study of time scale modification algorithms applied to support hearing impaired schoolchildren is presented. Variety of algorithms are considered, namely: overlap-and add, two variations of synchronous overlapand- add, and the phase vocoder. Their effectiveness as well as real-time processing capabilities are examined.
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Real-Time Gastrointestinal Tract Video Analysis on a Cluster Supercomputer
PublicationThe article presents a novel approach to medical video data analysis and recognition. Emphasis has been put on adapting existing algorithms detecting le- sions and bleedings for real time usage in a medical doctor's office during an en- doscopic examination. A system for diagnosis recommendation and disease detec- tion has been designed taking into account the limited mobility of the endoscope and the doctor's requirements. The...
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FPGA Based Real Time Simulations of the Face Milling Process
PublicationThe article presents a successful implementation of the milling process simulation at the Field-Programmable Gate Array (FPGA). By using FPGA, very rigorous Real-Time (RT) simulation requirements can be met. The response time of the FPGA simulations is significantly reduced, and the time synchronization is better than in a typical RT system implemented in software. The FPGA-based approach is characterized by enormous flexibility...
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Real-Time Volatilomics: A Novel Approach for Analyzing Biological Samples
PublicationThe use of the ‘omics techniques in environmental research has become common-place. The most widely implemented of these include metabolomics, proteomics, genomics, and transcriptomics. In recent years, a similar approach has also been taken with the analysis of volatiles from biological samples, giving rise to the so-called ‘volatilomics’ in plant analysis. Developments in direct infusion mass spectrometry (DI-MS) techniques have...
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Overhead wires detection by FPGA real-time image processing
PublicationThe paper presents design and hardware implementation of real-time image filtering for overhead wires detection divided on image processing and results presentation blocks. The image processing block was separated from the whole implementation, and its delay and hardware complexity was analysed. Also the maximum frequency of image processing of the proposed implementation was estimated.
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Ionospheric scintillations computation using real-time GPS observations
PublicationThe following paper presents the results of quasi-real-time determination of the values of phase scintillations indices at the period of ionospheric disturbances that occurred as a consequence of the Sun flares observed on March 7 and 9, 2012. Double-frequency observations with 1-second measurement interval from the EPN (EUREF Permanent Network) network sites located at high latitudes were used for the analysis. To determine the phase...
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An Overview of the Development of a Real-Time System for Endoscopic Video Classification
PublicationThe article presents the results of improving endoscopic image classification algorithms in an effort towards applying them in a real-time diagnosis supporting system. Methods for the detection and removal of personal data are presented and discussed. The currently developed recognition algorithms have been improved in terms of accuracy and performance to make them suitable for a real-life implementation. Their test results are...
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Real-Time Multimedia Stream data Processing in a Supercomputer Environment
PublicationRozdział opisuje doświadczenia uzyskane przez autorów podczas pracy w projekcie MAYDAY EURO 2012. Przedstawiono główny cel projektu - stworzenie systemu umożliwiającego rozwijanie i równolegle wykonywanie usług multimedialnych w środowisku klastra obliczeniowego dużej mocy. opisano tematykę przetwarzania dużej liczby strumieni multimedialnych na komputerach dużej mocy. Następnie zaprezentowano możliwości platformy KASKADA: tworzenie...
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Real-Time Volatilomics: A Novel Approach for Analyzing Biological Samples
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Concept of web service for real-time satellite imagery dissemination
PublicationW artykule zaproponowano system upowszechniania obrazów satelitarnych w czasie niemal rzeczywistym realizujący ideę oprogramowania jako usługi. System jest złożony z 4 logicznych modułów - modułu akwizycji danych, zarządzania, serwera Web oraz klienta. Protokół zapytań WCS jest wykorzystywany jako interfejs pomiędzy większością modułów. System tworzony jest z myślą o udostępnianiu danych dla zdalnych użytkowników w formie usługi...
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Real-Time stability monitoring for expansion of the UCTE synchronous area
PublicationW referacie przedstawiono zasady wykorzystania systemu WAMS dla potrzeb oceny zapasu stabilności lokalnej systemu elektroenergetycznego.
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Hardware Implementation of Real Time Cavity Parameters Identification System
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Real-Time Bleeding Detection in Gastrointestinal Tract Endoscopic Examinations Video
PublicationThe article presents a novel approach to medical video data analysis and recognition of bleedings. Emphasis has been put on adapting pre-existing algorithms dedicated to the detection of bleedings for real-time usage in a medical doctor’s office during an endoscopic examination. A real-time system for analyzing endoscopic videos has been designed according to the most significant requirements of medical doctors. The main goal of...
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Performance Measurements of Real Time Video Transmission from Car Patrol
PublicationThe HSUPA technology application to video streaming from moving vehicle to the central server is presented in the paper. A dedicated software for transmission control in case of non public IP address is employed. Quality of video streaming in urban area was measured. Several car routes were investigated in the area of the Polish Tricity. Measurements pointed out that the real time streaming quality during vehicle movement is sufficient...
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Cross-Platform Real-Time Nuclear Reactor Basic Principle Simulator
PublicationAbstract—In the paper several approaches to building the real-time basic principle simulators of nuclear reactor processes are presented and their characteristics are analyzed. The characteristics of developed simulators for MATLAB/Simulink including their limitations, and the idea of a cross-platform simulator independent of specific hardware or software are presented. Mathematical models of selected nuclear reactor’s processes...
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Prediction of Processor Utilization for Real-Time Multimedia Stream Processing Tasks
PublicationUtilization of MPUs in a computing cluster node for multimedia stream processing is considered. Non-linear increase of processor utilization is described and a related class of algorithms for multimedia real-time processing tasks is defined. For such conditions, experiments measuring the processor utilization and output data loss were proposed and their results presented. A new formula for prediction of utilization was proposed...
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Research of electric drive systems with real time software configurable control
PublicationПредмет исследования. Представлен учебно-лабораторный стенд для исследования систем управления элек- троприводами. Стенд используется для обучения студентов системам управления электроприводами и предна- значен для повышения эффективности усвоения материала. Метод. В основу предлагаемого решения положен метод взаимного нагружения электрических машин, питаемых от силовых преобразователей с общим звеном постоянного тока. Это позволяет...
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Real-time facial feature tracking in poor quality thermal imagery
PublicationRecently, facial feature tracking systems have become more and more popular because of many possible use cases. Especially in medical applications location of the face and facial features are very useful. Many researches have presented methods to detect and track facial features in visible light. However, facial feature analysis in thermography may also be very advantageous. Some examples of using infrared imagery in medicine include...
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Disk space allocation schemes for real-time data gathering applications
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CMOS implementation of an analogue median filter for image processing in real time
PublicationAn analogue median filter, realised in a 0.35 μm CMOS technology, is presented in this paper. The key advantages of the filter are: high speed of image processing (50 frames per second), low-power operation (below 1.25 mW under 3.3 V supply) and relatively high accuracy of signal processing. The presented filter is a part of an integrated circuit for image processing (a vision chip), containing: a photo-sensor matrix, a set of...
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Real-time hybrid model of a wind turbine with doubly fed induction generator
PublicationIn recent years renewable sources have been dominating power system. The share of wind power in energy production increases year by year, which meets the need to protect the environment. Possibility of conducting, not only computer simulation, but also laboratory studies of wind turbine operation and impact on the power system and other power devices in laboratory conditions would be very useful. This article presents a method...
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REAL-TIME VOICE QUALITY MONITORING TOOL FOR VOIP OVER IPV6 NETWORKS
PublicationThe primary aim of this paper is to present a new application which is at this moment the only open source real-time VoIP quality monitoring tool that supports IPv6 networks. The application can keep VoIP system administrators provided at any time with up-to-date voice quality information. Multiple quality scores that are automatically obtained throughout each call reflect influence of variable packet losses and delays on voice...
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Multiple sound sources localization in real time using acoustic vector sensor
PublicationMethod and preliminary results of multiple sound sources localization in real time using the acoustic vector sensor were presented in this study. Direction of arrival (DOA) for considered source was determined based on sound intensity method supported by Fourier analysis. Obtained spectrum components for considered signal allowed to determine the DOA value for the particular frequency independently. The accuracy of the developed...
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Automotive Validation Functions for On-line Test Evaluation of Hybrid Real-time Systems
PublicationThe aim of this paper is to present the means of black-box on-line test evaluation for hybrid real-time systems. The described procedures can be used for the model-based testing process so as to improve its effectiveness. In particular, intelligent automotive validation functions are considered, which are divided into different types depending on the nature of the evaluated issue. All provided definitions are specified on the meta-model...
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Task Allocation and Scalability Evaluation for Real-Time Multimedia Processing in a Cluster Envirinment
PublicationAn allocation algorithm for stream processing tasks is proposed (Modified best Fit Descendent, MBFD). A comparison with another solution (BFD) is provided. Tests of the algorithms in an HPC environment are descrobed and the results are presented. A proper scalability metric is proposed and used for the evaluation of the allocation algorithm.
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Real-Time connection Between Immerse 3D Vizualization Laboratory and Kaskada Platform
PublicationMultimedia stream processing into two cooperative different systems (cluster platform and virtual lab) is considered. The considered selected information about the systems is presented and the idea of its communication when executing the distributed application is proposed. A general schema of the communication architecture is given. Tests of data transmission quality are considered and their results are presented.
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Probabilistic Sequence Mining – Evaluation and Extension of ProMFS Algorithm for Real-Time Problems
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Pi of the Sky – all-sky, real-time search for fast optical transients
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Energy storage device based on flywheel, power converters and Simulink real-time
PublicationThis electronic document is a “live” template and already defines the components of your paper [title, text, heads, etc.] in its style sheet. Paper presents information on Energy Storage Device based on Flywheel and bi-directional IGBT Power Converters – designed for LINTE^2 laboratory owned by Gdansk University of Technology in Poland. Paper is divided into four sections. First section of the paper provides introductory information...
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Kalman filtering for 3d real time data visualisation of multibeam sonar records.
PublicationPrzedstawiono zastosowanie filtracji Kalmana do korekcji błędów systematycznych występujących w danych pochodzących z systemu wielozwiązkowego. Zaproponowano dwuetapową filtrację danych dla każdego wachlarza danych, która realizowana jest w czasie rzeczywistym. Zaprezentowano rezultaty wizualizacji dna morskiego przed i po filtracji.
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Parallel implementation of background subtraction algorithms for real-time video processing on a supercomputer platform
PublicationResults of evaluation of the background subtraction algorithms implemented on a supercomputer platform in a parallel manner are presented in the paper. The aim of the work is to chose an algorithm, a number of threads and a task scheduling method, that together provide satisfactory accuracy and efficiency of a real-time processing of high resolution camera images, maintaining the cost of resources usage at a reasonable level. Two...
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Low cost real time UAV stereo photogrammetry modelling technique – accuracy considerations
PublicationThe paper presents accuracy considerations regarding three 3D modelling techniques. The tested new consumer type stereo camera (ZED 3D Stereolabs) has been implemented info an aerial mapping system, on board micro air vehicle MAV) and tested object has been mapped using a real-time photogrammetry with original real-time software application. The evaluated results has been compared with model gained with a state of art unmanned...
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Operational Enhancement of Numerical Weather Prediction with Data from Real-time Satellite Images
PublicationNumerical weather prediction (NWP) is a rapidly expanding field of science, which is related to meteorology, remote sensing and computer science. Authors present methods of enhancing WRF EMS (Weather Research and Forecast Environmental Modeling System) weather prediction system using data from satellites equipped with AMSU sensor (Advanced Microwave Sounding Unit). The data is acquired with Department of Geoinformatics’ ground...