Filters
total: 4306
-
Catalog
- Publications 3708 available results
- Journals 39 available results
- Conferences 10 available results
- Publishing Houses 1 available results
- People 62 available results
- Projects 3 available results
- Laboratories 2 available results
- e-Learning Courses 41 available results
- Events 5 available results
- Open Research Data 435 available results
displaying 1000 best results Help
Search results for: PROTEIN FOLDING
-
Dimeric structure of the N-terminal domain of PriB protein from Thermoanaerobacter tengcongensis solved ab initio
PublicationPriB is one of the components of the bacterial primosome, which catalyzes the reactivation of stalled replication forks at sites of DNA damage. The N-terminal domain of the PriB protein from the thermophilic bacterium Thermoanaerobacter tengcongensis (TtePriB) was expressed and its crystal structure was solved at the atomic resolution of 1.09 Å by direct methods. The protein chain, which encompasses the first 104 residues of the...
-
Large-scale DFT calculations in implicit solvent-A case study on the T4 lysozyme L99A/M102Q protein
PublicationW ostatnich latach zaproponowano szereg modeli typu implicit solvent, ktore bazują na bezpośrednim rozwiązaniu niejednorodnego równania Poissona w przestrzeni rzeczywistej. Modele te charakteryzują się elegancją, ponieważ wnęka, w której umieszczona jest molekuła substancji rozpuszczanej zdefiniowana jest bezpośrednio w funkcji gęstości elektronowej, a rozkład ładunku jest w sposób samouzgodniony polaryzowany dzięki reakcji dielektryka,...
-
Taq DNA polymerase fused with DNA binding protein with increased resistance to inhibitors from clinical samples
PublicationNowadays PCR method is commonly used in molecular diagnostic. However, in many cases PCR is limited, by the presence of inhibitory substances in biological, soil or food samples Efficiency and fidelity of amplification is strongly connected with DNA polymerase and reaction conditions. To meet the requirements of modern diagnostic methods it is essential to seeking for new DNA polymerases with better properties useful in these field....
-
Specific Binding of Cholesterol to the Amyloid Precursor Protein: Structure of the Complex and Driving Forces Characterized in Molecular Detail
PublicationC99 is the C-terminal membrane-bound fragment of the amyloid precursor protein that is cleaved by γ-secretase to release Aβ peptides, the hallmark of Alzheimer’s disease (AD). Specific interactions of C99 with cholesterol have been proposed to underlie the recognized role of cholesterol in promoting amyloidogenesis. By using molecular dynamics simulations, we studied cholesterol binding to C99 in a lipid bilayer. We determined...
-
Generation and Characterization of a DNA-GCN4 Oligonucleotide-Peptide Conjugate: The Impact DNA/Protein Interactions on the Sensitization of DNA
PublicationRadiotherapy, the most common therapy for the treatment of solid tumors, exerts its effects by inducing DNA damage. To fully understand the extent and nature of this damage, DNA models that mimic the in vivo situation should be utilized. In a cellular context, genomic DNA constantly interacts with proteins and these interactions could influence both the primary radical processes (triggered by ionizing radiation) and secondary reactions,...
-
Long-range, water-mediated interaction between a moderately active antifreeze protein molecule and the surface of ice
PublicationUsing molecular dynamics simulations, we show that a molecule of moderately active antifreeze protein (type III AFP, QAE HPLC-12 isoform) is able to interact with ice in an indirect manner. This interaction occurs between the ice binding site (IBS) of the AFP III molecule and the surface of ice, and it is mediated by liquid water which separates these surfaces. As a result, the AFP III molecule positions itself at a specific orientation...
-
t-SNE Highlights Phylogenetic and Temporal Patterns of SARS-CoV-2 Spike and Nucleocapsid Protein Evolution
PublicationWe propose applying t-distributed stochastic neighbor embedding to protein sequences of SARS-CoV-2 to construct, visualize and study the evolutionary space of the coronavirus. The basic idea is to explore the COVID-19 evolution space by using modern manifold learning techniques applied to evolutionary distances between variants. Evolutionary distances have been calculated based on the structures of the nucleocapsid and spike proteins.
-
UNRES-GPU for Physics-Based Coarse-Grained Simulations of Protein Systems at Biological Time- and Size-Scales
PublicationThe dynamics of the virus like particles (VLPs) corresponding to the GII.4 Houston, GII.2 SMV, and GI.1 Norwalk strains of human noroviruses (HuNoV) that cause gastroenteritis was investigated by means of long-time (about 30 μs in the laboratory timescale) molecular dynamics simulations with the coarse-grained UNRES force field. The main motion of VLP units turned out to be the bending at the junction between the P1 subdomain (that...
-
Speech codec enhancements utilizing time compression and perceptual coding
PublicationA method for encoding wideband speech signal employing standardized narrowband speech codecs is presented as well as experimental results concerning detection of tonal spectral components. The speech signal sampled with a higher sampling rate than it is suitable for narrowband coding algorithm is compressed in order to decrease the amount of samples. Next, the time-compressed representation of a signal is encoded using a narrowband...
-
A hybrid speech codec employing parametric and perceptual coding techniques
PublicationW referacie przedstawiono hybrydowy kodek mowy dla zastosowan w komunikacji VoIP wykorzystujący kodowanie parametryczne i percetualne. Sygnał mowy jest dzielony na składowe dźwięczne, które podlegają kodowania perceptualnemu, składowe bezdźwięczne, które kodowane są metodą parametryczną oraz transjenty, które nie są kodowane żadną stratną metodą. Dodatkowo przedstawiono architekturę kodeka, w której perceptualnie kodowana i przesyłana...
-
Underwater acoustic communications system with error correction and synchronization coding
PublicationNiezawodna transmisja danych w wielodrogowym i niestacjonarnym płytkim kanale podwodnym wymaga zastosowania efektywnej techniki modulacji oraz equalizacji adaptacyjnej. W zaproponowanym artykule w systemie transmisji danych zastosowano modulację OFDM oraz equalizację adaptacyjną opartą o filtrację Kalmana. Ponadto zaimplementowano dwie techniki kodowania: FEC w celu eliminacji błędów transmisji oraz kodowanie pseudoszumowe, którego...
-
Design of three control algorithms for an averaging tank with variable filing
PublicationAn averaging tank with variable filling is a nonlinear multidimensional system and can thus be considered a complex control sys-tem. General control objectives of such object include ensuring stability, zero steady state error and achieving simultaneously shortest possible settling time and minimal overshoot. The main purpose of this research work was the modelling and synthesis of three control systems for an averaging tank. In...
-
BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS
Journals -
Agnieszka Potęga dr inż.
People -
Analysis of ring cracks in ceramic rolling elements using the boundary element method
PublicationCeramic materials have been increasingly used in bearing technology for over a dozen years. This is due to the characteristic properties of ceramic materials such as: high hardness, corrosion resistance, the possibility of use in aggressive chemical environments, as well as due to the lower specific weight compared to steel materials. However, the use of ceramic materials is connected with many limitations. The main disadvantages...
-
Effect of Storage Conditions of Rutile Flux Cored Welding Wires on Properties of Welds
PublicationThe influence of storage locations of two grades of rutile flux cored welding wires on their surface condition and the strength of the welds made with them were studied. Wires were stored in real urban conditions (Gdańsk and Katowice) for 1 month, simultaneously recording changes in conditions: temperature and relative humidity of the environment. Visual tests of wires in the delivered and stored condition as well as visual and...
-
The influence of inflation pressure and ambient temperature on the value of the truck tires rolling resistance
PublicationThe articlediscusses the effect of inflation pressure and the ambient temperature on the value of the rolling resistance of truck tires which directly translates into fuel consumption. For this purpose, a series of measurements was made at two ambient temperatures (at 25°C and -15°C), using different pumping pressures.
-
Convergence of Monte Carlo algorithm for solving integral equations in light scattering simulations
PublicationThe light scattering process can be modeled mathematically using the Fredholm integral equation. This equation is usually solved after its discretization and transformation into the system of algebraic equations. Volume integral equations can be also solved without discretization using the Monte Carlo (MC) algorithm, but its application to the light scattering simulations has not been sufficiently studied. Here we present implementation...
-
The Use of Direct Shear Test for Optimization of Interlayer Bonding Under a Poroelastic Layer
PublicationPoroelastic Road Surfaces (PERS) are characterised by porous structure with air void content of 20% or higher and stiffness almost 10 times lower than that of a standard asphalt course. Such properties enable noise reduction by up to 12 dB in comparison to SMA 11 mixture. However, the disadvantage of a poroelastic pavement is its low durability, which partially results from delamination from the lower layer. The paper aims to investigate...
-
Impact of laser beam welding on mechanical behaviour of 2.25Cr–1Mo (P22) steel
PublicationThe use of welding processes in the manufacturing and repair of structures intended for the energy industry plays a key role in the guarantee of a continuous supply of fossil fuels, which is the basic condition for ensuring energy security. A square butt joint of 10 mm thick plate of 2.25Cr–1Mo (P22) steel was fabricated by autogenous laser beam welding process and then post-weld heat treatment (PWHT) for two sets of process parameters...
-
Self-Adaptive Mesh Generator for Global Complex Roots and Poles Finding Algorithm
PublicationIn any global method of searching for roots and poles, increasing the number of samples increases the chances of finding them precisely in a given area. However, the global complex roots and poles finding algorithm (GRPF) (as one of the few) has direct control over the accuracy of the results. In addition, this algorithm has a simple condition for finding all roots and poles in a given area: it only requires a sufficiently dense...
-
Influence of Parameters of Laser Beam Welding on Structure of 2205 Duplex Stainless Steel
PublicationLaser welding is used in modern industry, having many advantages comparing to traditional welding technologies. Nowadays, industry sectors such as shipbuilding, automotive and aviation can’t be imagined without laser processing technologies. Possibility of increase of welded joint properties, autogenous welding and high level of process automation makes the technology of laser welding perspective part of the industry. Physical...
-
An Improvement of Global Complex Roots and Poles Finding Algorithm for Propagation and Radiation Problems
PublicationAn improvement of the recently developed global roots finding algorithm has been proposed. The modification allows to shorten the computational time by reducing the number of function calls. Moreover, both versions of the algorithms (standard and modified) have been tested for numerically defined functions obtained from spectral domain approach and field matching method. The tests have been performed for three simple microwave...
-
Crystal structure, chemical bonding, and physical properties of layered AIrSn2 (A = Sr and Ba)
PublicationWe report the experimental and theoretical investigation of structure, chemical bonding interactions, and physical properties of new ternary stannides AIrSn2 (A = Sr and Ba). AIrSn2 (A = Sr and Ba) crystallizes in the orthorhombic Re3B-type structure with the space group Cmcm (No. 64). According to single-crystal X-ray diffraction results, the structure of AIrSn2 (A = Sr and Ba) can be considered as a Zintl-type compound with heterogeneous...
-
Interlayer defect evolution in an organic coating system on steel under hydromechanical loading
Publication -
The operational method of filling information gaps in satellite imagery using numerical models
Publication -
A new deterministic method of finding safe ship trajectory for any convex domain
PublicationW artykule wprowadzono nową deterministyczną metodę wyznaczania bezpiecznej trajektorii statku dla sytuacji spotkania z wieloma obiektami obcymi i dla dowolnej zadanej domeny. Jej prostota i fakt, że minimalizuje ona liczbę manewrów czynią ją dobrą alternatywą dla obecnie stosowanych metod. Metoda jest przedstawiona tak, aby mogła być bezpośrednio zastosowana w pokładowych systemach antykolizyjnych lub w systemach VTS.
-
Finding safe and efficient shipping routes in ice-covered waters: A framework and a model
Publication -
Determining ATP concentration in Candida albicans in process of forming germ tube forms
Publication -
Transient torsional vibrations control in the geared drive trains of the hot rolling mills
Publication -
Identification of the Inertia of Masses Flowing Water through the Pipes in Water Power Plants
PublicationW artykule przedstawiono sposób identyfikacji stałej czasowej reprezentującej bezwładność mas przepływającej wody w systemie rurociągów, w elektrowni wodnej. Przedstawiono strukturę modelu układu regulacji prędkości kątowej wykorzystywanego w procesie identyfikacji oraz przeprowadzono badania skuteczności działania metody w środowisku Matlab-Simulink. Opisano najistotniejsze wnioski wynikające z przeprowadzonych badań symulacyjnych.
-
Wady powierzchniowe ceramicznych elementów tocznych = Surface cracks of ceramic rolling elements
PublicationMateriały ceramiczne posiadają kombinację optymalnych własności, które są niezbędne w zastosowaniach na wysoko obciążone elementy maszyn. Podstawowym problemem związanym z wytrzymałością zmęczeniową materiałów ceramicznych są wszelkiego rodzaju wady powierzchniowe będące efektem procesu wytwarzania lub wynikające z defektów struktury materiału ceramicznego. W artykule przedstawiono badania doświadczalne dwutlenku cyrkonu ze sztucznie...
-
Experimental Study of the Rolling Friction Coefficient in Highly Loaded Supports of Rotary Kilns
Publication -
Factors Forming the Consumers’ Willingness to Pay a Price Premium for Ecological Goods in Ukraine
Publication -
Evaluation of inverted pavement by structural condition indicators from falling weight deflectometer
Publication -
Numerical modelling of asymetric double-layer Al-Cu plate rolling process
PublicationNiekorzystnym zjawiskiem towarzyszącym procesom walcowania płaskich wyrobów bimetalowych jest krzywizna pasma na wyjściu z kotliny walcowniczej wynikająca z nierównomierności odkształcenia warstw bimetalowej blachy. Możliwość szybkiego i łatwego przeciwdziałania temu zjawisku daje wprowadzenie asymetrii prędkości bądź średnic walców roboczych. W przedstawionym artykule zaprezentowano badania komputerowe procesu walcowania blach...
-
Numerical simulations of the influence of injection moulding parameters on mechanical properties of the polyamide composite
PublicationZaprezentowano wyniki symulacji numerycznej wpływu parametrów technologicznych procesu wtryskiwania na wybrane właściwości mechaniczne kompozytu poliamidowego. Symulacje przeprowadzono z wykorzystaniem programu Cadmould-3d.
-
Multivariate evaluation by quality indicators of no-tillage system in Argiudolls of rolling pampa (Argentina)
Publication -
Response of Barley Cultivars, Hordeum vulgare L. to foliar Feeding by Nano Potassium
Publication -
The Role of Daylight in Forming the Traditional Space: Classification of Traditional Iranian Daylighting Elements
PublicationDaylight character in a space can be defined as the manner in which daylight permeates and is dispersed in that space. The architectural elements related to daylighting under investigation in this study were rooted in Iranian-Isfahani heritage, considered traditional Iranian architecture (from the 16th to early 20th century). The establishment of a classification system for daylighting systems holds significant utility. This...
-
Studies of polypropylene membrane fouling during microfiltration of broth with Citrobacter freundii bacteria
Publication -
Evaluation of fouling potential of nanofiltration membranes based on the dynamic contact angle measurements
Publication -
Possibilities of using interlayers during diffusion welding of Ti Gr2 and AISI 316L
Publication -
The role of organizational and spouse support in solving work-life conflict among migrants.
Publication -
The Effect of Welding Conditions on Mechanical Properties of Superduplex Stainless Steel Welded Joints
PublicationThe tests results of superduplex stainless steel welded joints made with a different heat input, using automatic submerged arc welding (SAW) and semi-automatic flux-cored arc welding (FCAW) have been presented. Metallographic examinations, the measurements of the ferrite content, the width of the heat affected zone (HAZ) and the hardness of the welds in characteristic areas have been performed. Significant differences in the amount of...
-
Bead-on-plate welding on S235JR steel by underwater local dry chamber process
PublicationThe article presents the results of the effect of parameters of underwater local dry chamber welding on the properties of padding welds. The effect of heat input and the type of shielding gas on the structure and hardness of welds was established. the functions for estimating the maximum hardness of the heat affected zone have been also elaborated.
-
Solving boundary value problems for delay differential equations by a fixed-point method
PublicationOgólne liniowe zagadnienie brzegowe dla nieliniowego układu równań różniczkowych z opóźnieniem jest redukowane do zagadnienia o punkcie stałym odpowiedniego operatora a następnie poszukiwany punkt stały tego operatora jest przybliżany funkcją kawałkami liniową zdefiniowaną poprzez jej wartości w węzłach. Przy odpowiednich założeniach istnienie tego punktu stałego jest równoważne istnieniu tzw. epsilon przybliżonych punktów stałych...
-
Stability and load bearing capacity of a braced truss under upward wind loading
PublicationThe paper is focused on the numerical and experimental investigation of stability of a steel truss under upward wind loading. The structure was stiffened by elastic braces situated at the top and bottom chord. Usually the lateral (translational) brace stiffness is considered. However, the rotational stiffness of braces caused by interaction between torsional stiffness of the truss top chord and bending stiffness of the roof elements...
-
Stability and load bearing capacity of a braced truss under upward wind loading
PublicationThe paper is focused on the numerical and experimental investigation of stability of a steel truss under upward wind loading. The structure was stiffened by elastic braces situated at the top and bottom chord. Usually the lateral (translational) brace stiffness is considered. However, the rotational stiffness of braces caused by interaction between torsional stiffness of the truss top chord and bending stiffness of the roof elements...
-
The new footbridge in city of Cracow dynamic design and final verification in test loading
PublicationArtykuł przedstawia rozwój projektu kładki od formy architektonicznej do ostatecznego kształtu konstrukcji.