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Search results for: peptide profile

Search results for: peptide profile

  • Kosmiczne zastosowania zaawansowanych technologii informatycznych

    e-Learning Courses
    • J. Proficz
    • A. Królicka-Gałązka

    Nowoczesne technologie wykorzystania systemów dużej mocy obliczeniowej: superkomputerów o architekturze klastrowej na przykładzie środowisk związanych z masowym przetwarzaniem danych (Big Data), obliczeniami w chmurze (Cloud Computing) oraz klasycznym podejściem wymiany wiadomości (MPI: Message Passing Interface) dla przetwarzania wsadowego.

  • Jacek Rumiński prof. dr hab. inż.

    Wykształcenie i kariera zawodowa 2022 2016   2002   1995   1991-1995 Tytuł profesora Habilitacja   Doktor nauk technicznych   Magister inżynier     Prezydent RP, dziedzina nauk inżynieryjno-technicznych, dyscyplina: inzyniera biomedyczna Politechnika Gdańska, Biocybernetyka i inżyniera biomedyczna, tematyka: „Metody wyodrębniania sygnałów i parametrów z różnomodalnych sekwencji obrazów dla potrzeb diagnostyki i wspomagania...

  • Are stabilizing osmolytes preferentially excluded from the protein surface? FTIR and MD studies

    Interactions between osmolytes and hen egg white lysozyme in aqueous solutions were studied by means of FTIR spectroscopy and molecular dynamics. A combination of difference spectra method and chemometric analysis of spectroscopic data was used to determine the number of osmolyte molecules interacting with the protein, and the preferential interaction coefficient in presented systems. Both osmolytes – L-proline and trimethylamine-N-oxide...

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  • Kamila Kokot-Kanikuła mgr

    Kamila Kokot-Kanikuła is a digital media senior librarian at Gdańsk University of Technology (GUT) Library. She works in Digital Archive and Multimedia Creation Department and her main areas of interests include early printed books, digital libraries, Open Access and Open Science. In the Pomeranian Digital Library (PDL) Project she is responsible for creating annual digital plans, transferring files on digital platform, and promoting...

  • Processing, physico-mechanical and thermal properties of reclaimed GTR and NBR/reclaimed GTR blends as function of various additives

    In this work, ground tire rubber (GTR) was mechano-chemically reclaimed in the presence of bitumen and various additives. During studies three types of processing and curing additives: (i) peptizer P300; (ii) vulcanization accelerator tetramethylthiuram disulfide (TMTD) and (iii) organic peroxide di(2-tert-butyl-peroxyisopropyl)benzene (BIB1) were applied to enhance reclaiming of GTR. Reclaiming process was evaluated by oscillating...

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  • Poly-L-Lysine-modified boron-doped diamond electrodes for the amperometric detection of nucleic acid bases

    Publication

    - JOURNAL OF ELECTROANALYTICAL CHEMISTRY - Year 2015

    Boron-doped diamond (BDD) is a very promising supporting material used in the construction of biosensors for molecular recognition. The direct immobilization of structurally-organized huge molecules, such as poly-L-Lysine (PLL) provides the possibility of determining organic molecules, e.g. nucleic acid bases (e.g. adenine, guanine) or peptides and proteins. This paper describes the direct method for chemical and electrochemical...

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  • Evaluation of a Small Inland Ferry’s Energy Requirements from the Acceleration Stage of Towing Tank Model Tests

    Publication

    Computing the power required to meet a ship’s operational needs is one of the most important tasks in naval design. The power required to propel a vessel is directly related to the resistance the hull experiences as it moves through the water. The conventional method of determining a ship’s resistance involves towing tank tests of ship models at a fixed speed; however, for short-range vessels, where constant speed is not the primary...

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  • Time fractional analysis of Casson fluid with application of novel hybrid fractional derivative operator

    Publication
    • A. U. Rehman
    • M. Riaz
    • I. Khan
    • A. Mohamed

    - AIMS Mathematics - Year 2023

    A new approach is used to investigate the analytical solutions of the mathematical fractional Casson fluid model that is described by the Constant Proportional Caputo fractional operator having non-local and singular kernel near an infinitely vertical plate. The phenomenon has been expressed in terms of partial differential equations, and the governing equations were then transformed in non-dimensional form. For the sake of generalized...

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  • Host and pathogen factors in Klebsiella pneumoniae upper urinary tract infections in renal transplant patients

    Publication
    • J. Gołębiewska
    • B. Krawczyk
    • M. Wysocka
    • A. Ewiak
    • J. Komarnicka
    • M. Bronk
    • B. Rutkowski
    • A. Dębska-ślizień

    - JOURNAL OF MEDICAL MICROBIOLOGY - Year 2019

    Purpose . To analyse the role of virulence factors (VFs) and host in Klebsiella pneumoniae upper urinary tract infections (UTIs) in renal transplant (RTx) recipients. Methodology. Clinical and demographic data were registered prospectively. Phylogenetic background of K. pneumoniae isolates was analysed by PCR melting profiles (MP) and the following VFs genes: fimH-1, uge, kpn, ycfM, mrkD, rmpA, magA, hlyA, cnf-1, irp-1, irp-2,...

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  • A method to synthesise groove cam Geneva mechanisms with increased dwell period

    Publication

    The present study develops a method to synthesise the groove cam Geneva mechanism with increased dwell period. The main condition of the synthesis is to provide the desired law of motion of the wheel. Additional synthesis conditions are the limitation of the maximum pressure angle and the limitation of the minimum curvature radius of the cam profile. Unlike the conventional Geneva mechanisms, the synthesised groove cam Geneva mechanisms...

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  • Jaroslaw Spychala dr

    People

    Oprócz bardzo dobrego wykształcenia osoba posiada również wieloletnie doświadczenie zawodowe, które jest poświadczeniem tego, że potrafi wykorzystać swoją wiedzę teoretyczną w praktycznych działaniach. Doświadczenie zawodowe jest bardzo bogate i rozbudowane. Ze względu na nabyte całkiem nowe umiejętności zwiększa się atrakcyjność doświadczonego pracownika. Są to między innymi kreatywne myślenie, zorientowanie na cel, odporność...

  • Magdalena Maria Popowska dr

    Magdalena Popowska (PhD) is a researcher and lecturer of Organization Science and Entrepreneurship at the Faculty of Management and Economics of Gdansk University of Technology. For many years she has been in charge of exchange programmes, double degrees and other internationalization activities. In 2008-2016 she was a Vice-Dean for International and Public Affairs and now she is a Dean Proxy for International Cooperation. Her...

  • Piotr Waszczur dr inż.

    People

  • RDF dataset profiling - a survey of features, methods, vocabularies and applications

    Publication
    • M. B. Ellefi
    • B. Zohra
    • J. G. Breslin
    • E. Demidova
    • S. Dietze
    • K. Todorov
    • J. Szymański

    - Semantic Web - Year 2018

    The Web of Data, and in particular Linked Data, has seen tremendous growth over the past years. However, reuse and take-up of these rich data sources is often limited and focused on a few well-known and established RDF datasets. This can be partially attributed to the lack of reliable and up-to-date information about the characteristics of available datasets. While RDF datasets vary heavily with respect to the features related...

  • Interaction of the conserved region 4.2 of sigma(E) with the RseA anti-sigma factor

    Publication
    • C. Tam
    • B. Collinet
    • G. Lau
    • S. Raina
    • D. Missiakas

    - JOURNAL OF BIOLOGICAL CHEMISTRY - Year 2002

    Eo-E RNA polymerase transcribes a regulon of folding factors for the bacterial envelope and is induced by physical and chemical stresses. The RseA anti-sigma factor inhibits the activity of Esigma(E) RNA, polymerase. It is shown here that the N-terminal portion of sigma(E), residues 1-153, binds core RNA polymerase. RseA interacts with residues 154-191 of sigma(E), a site that is homologous to region 4, the sigma factor binding...

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  • Accuracy of Trajectory Tracking Based on Nonlinear Guidance Logic for Hydrographic Unmanned Surface Vessels

    Publication

    - SENSORS - Year 2020

    A new trend in recent years for hydrographic measurement in water bodies is the use of unmanned surface vehicles (USVs). In the process of navigation by USVs, it is particularly important to control position precisely on the measuring profile. Precise navigation with respect to the measuring profile avoids registration of redundant data and thus saves time and survey costs. This article addresses the issue of precise navigation...

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  • Scheduling for Industrial Control Traffic Using Massive MIMO and Large Intelligent Surfaces

    Publication

    - Year 2023

    Industry 4.0, with its focus on flexibility and customizability, is pushing in the direction of wireless communication in future smart factories, in particular massive multiple-input multiple-output (MIMO), and its future evolution Large Intelligent Surfaces (LIS), which provide more reliable channel quality than previous technologies. As such, there arises the need to perform efficient scheduling of industrial control traffic...

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  • Non-enzymatic glutathione-mediated conjugation of unsymmetrical bisacridine C-2028 with anticancer activity

    Open Research Data
    open access
    • A. Potęga
    • D. Rafalska
    • E. Paluszkiewicz
    • K. Kozłowska-Tylingo

    The presented data complement the studies on the interplay between C-2028 (anticancer-active unsymmetrical bisacridine) and the glutathione S-transferase/glutathione (GST/GSH) system.

  • Video recordings of bees at entrance to hives

    Open Research Data
    open access - series: Bees

    Video recordings of bees at entrance to hives from 2017-04-22, 2017-04-23 and 2018-05-22. All recordings were made using hand-held full HD camera (Samsung Galaxy S3) and encoded using H.264 video codec (Standard Baseline Profile for mov files from 2017, High Profile for mp4 files from 2018) , 30 FPS and bit rate 14478 kb/s (mov files from 2017) or 16869 kb/s...

  • Comparison of Average Energy Slope Estimation Formulas for One-dimensional Steady Gradually Varied Flow

    To find the steady flow water surface profile, it is possible to use Bernoulli’s equation, which is a discrete form of the differential energy equation. Such an approach requires the average energy slope between cross-sections to be estimated. In the literature, many methods are proposed for estimating the average energy slope in this case, such as the arithmetic mean, resulting in the standard step method, the harmonic mean and...

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  • Badania nośności na zginanie innowacyjnego kształtownika giętego na zimno typu GEB

    Lekkie konstrukcje metalowe wytwarzane z kształtowników giętych na zimno to jedna z najszybciej rozwijających się dyscyplin w zakresie budownictwa. Do niedawna profile gięte na zimno stosowano wyłącznie jako elementy drugorzędne, czyli płatwie oraz rygle. Nowo opatentowany przekrój typu GEB ma być wykorzystywany jako element nośny konstrukcji ramowych. Jednak jego zaistnienie na rynku budowlanych konstrukcji metalowych jest uwarunkowane...

  • APPLICABILITY OF INLET AIR FOGGING TO MARINE GAS TURBINE

    The dependency of marine gas turbine on the ambient temperature leads to a decrease of the gas turbine power output in arid areas. Very often gas turbine power output demand is high and the power margins originally designed into the driver , has been exhausted. In such circumstances the inlet air fogging is an effective compensation of gas turbine power. In this paper an analysis of inlet air fogging applicability to marine gas...

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  • Enzymatic degradation and transport of endothiopeptides into Escherichia coli K12 mutant strains

    Publication

    - FEMS MICROBIOLOGY LETTERS - Year 2008

    Zbadano transport trzech otrzymanych na drodze syntezy ditiopeptydów do komórek Escherichia coli K12. Ponadto zbadano szybkość hydrolizy tych związków. Wszystkie peptydy są transportowane przez permeazy, natomiast są bardziej oporne na hydrolizę enzymatyczną w stosunku do naturalnych peptydów.

  • Anticandiadal properties of N-acylpeptides containing inhibitor of glucosamine-6-phosphate synthase

    Publication

    Otrzymano serię N-acylopeptydów zawierających inhibitor syntazy glukozamino-6-fosforanu i zbadano ich aktywność w stosunku do szczepów Candida albicans. Aktywność przeciwgrzybową skorelowano z właściwościami lipofilowymi otrzymanych peptydów. Peptydy zawierające resztę kwasu dekanowego wykazywały najwyższą aktywność przeciwgrzybową.

  • Turbiny Parowe, Gazowe i Wodne

    e-Learning Courses
    • K. Kosowski

    Podstawy obiegów cieplnych turbin parowych (obieg Rankine'a, obiegi z regeneracją, obiegi z przegrzewem międzystopniowym, dobór parametrów i schematów obiegu). Podstawy obiegów cieplnych turbin gazowych (obieg Braytona, obiegi z regeneracją, chłodzeniem międzystopniowym, sekwencyjnymi komorami spalania, Ericssona, dobór parametrów projektowych). Teoria stopnia turbinowego (rozkład ciśnień na profilu, siły działające na profil,...

  • WYKORZYSTANIE TESTU MUSHRA W BADANIU KORZYŚCI UŻYTKOWANIA PROTEZ SŁUCHOWYCH

    Publication

    - Year 2023

    Ocena jakości dopasowania aparatów słuchowych w kontekście korzyści, jakie może przy-nieść proteza jest złożonym zagadnieniem. Obiektywne parametry aparatów, które można wy-znaczyć (np. wzmocnienie czy pasmo przenoszenia) nie zawsze mają bezpośredni i decydujący wpływ w subiektywnej ocenie jakości dopasowania protezy słuchowej przez pacjenta. Pomiary efektywności aparatu słuchowego mogą dotyczyć wielu aspektów, między innymi kompensacji...

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  • Interactions in Ternary Aqueous Solutions of NMA and Osmolytes—PARAFAC Decomposition of FTIR Spectra Series

    Intermolecular interactions in aqueous solutions are crucial for virtually all processes in living cells. ATR-FTIR spectroscopy is a technique that allows changes caused by many types of such interactions to be registered; however, binary solutions are sometimes difficult to solve in these terms, while ternary solutions are even more difficult. Here, we present a method of data pretreatment that facilitates the use of the Parallel...

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  • Interactions of fish gelatin and chitosan in uncrosslinked and crosslinked with EDC films: FT-IR study

    Films based on fish gelatin, chitosan and blend of fish gelatin and chitosan before and after cross-linking with EDC have been characterized by FT-IR spectroscopy. The FT-IR spectrum of fish gelatin film showed the characteristic amide I, amide II and amide III bands, and the FT-IR spectrum of chitosan film confirmed that the polymer was only a partially deacetylated product, and included CH3-C=O and NH2 groups, the latter both...

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  • Radio Communication Antennas and MIMO Techniques (2023/24)

    e-Learning Courses
    • J. Magiera

    Course assigned to the following subject: - Radio Communication Antennas and MIMO Techniques (profile Radio Communication Systems and Networks [EN])

  • Naturalne związki organiczne

    Publication

    - Year 2013

    Książka zawiera dwanaście rozdziałów merytorycznych, w których omówiono występowanie, właściwości, otrzymywanie i zastosowanie następujących naturalnych organicznych: aminokwasy, peptydy, białka, cukry, lipidy, alkaloidy, steroidy, kwasy nukleinowe, polifenole i flawonoidy, hormony owadzie i roślinne, terpenoidy i izoterpenoidy oraz związki sygnałowe (feromony).

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  • Jacek Namieśnik prof. dr hab. inż.

    People

    Scientific discipline: chemistryRector in 2016-2019 He was born on 10 December, 1949 in Mogilno. He graduated in 1972 at the Faculty of Chemistry at Gdańsk University of Technology, obtaining a master's degree in chemical engineering. In 1972 he started working at Gdańsk University of Technology, where in 1978 he defended his doctoral thesis and in 1985 he completed his habilitation. He was appointed an associate professor in 1991...

  • Sensory analysis of confectionery products.

    Open Research Data

    The data set presents the results of the sensory analysis of confectionery products, which was carried out by the sensory profiling analysis method based on the PN-ISO 11035: 1999 standard – “Sensory analysis - Identification and selection of descriptors for determining the sensory profile using multivariate methods”. The method was used to evaluate...

  • On topology optimization of large deformation contact-aided shape morphing compliant mechanisms

    Publication

    - MECHANISM AND MACHINE THEORY - Year 2021

    A topology optimization approach for designing large deformation contact-aided shape morphing compliant mechanisms is presented. Such mechanisms can be used in varying operating conditions. Design domains are described by regular hexagonal elements. Negative circular masks are employed to perform dual task, i.e., to decide material states of each element and also, to generate rigid contact surfaces. Each mask is characterized by...

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  • Combining MUSHRA Test and Fuzzy Logic in the Evaluation of Benefits of Using Hearing Prostheses

    Publication

    - Electronics - Year 2023

    Assessing the effectiveness of hearing aid fittings based on the benefits they provide is crucial but intricate. While objective metrics of hearing aids like gain, frequency response, and distortion are measurable, they do not directly indicate user benefits. Hearing aid performance assessment encompasses various aspects, such as compensating for hearing loss and user satisfaction. The authors suggest enhancing the widely used...

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  • On Tradeoffs Between Width- and Fill-like Graph Parameters

    In this work we consider two two-criteria optimization problems: given an input graph, the goal is to find its interval (or chordal) supergraph that minimizes the number of edges and its clique number simultaneously. For the interval supergraph, the problem can be restated as simultaneous minimization of the path width pw(G) and the profile p(G) of the input graph G. We prove that for an arbitrary graph G and an integer t ∈ {1,...

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  • Tomasz Korol dr hab. inż.

    Education Gdańsk University of Technology, Faculty of Management and Economics (2001) University of Applied Sciences Stralsund (1999) Degree / scientific title Habilitation – Gdańsk University of Technology, Faculty of Management and Economics (2015) Ph.D. – Gdańsk University of Technology, Faculty of Management and Economics (2004) Employment Gdańsk University of Technology - associate professor (since 2017); assistant professor...

  • Data Analysis in Bridge of Data

    Publication

    The chapter presents the data analysis aspects of the Bridge of Data project. The software framework used, Jupyter, and its configuration are presented. The solution’s architecture, including the TRYTON supercomputer as the underlying infrastructure, is described. The use case templates provided by the Stat-reducer application are presented, including data analysis related to spatial points’ cloud-, audio- and wind-related research.

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  • DEPO: A dynamic energy‐performance optimizer tool for automatic power capping for energy efficient high‐performance computing

    In the article we propose an automatic power capping software tool DEPO that allows one to perform runtime optimization of performance and energy related metrics. For an assumed application model with an initialization phase followed by a running phase with uniform compute and memory intensity, the tool performs automatic tuning engaging one of the two exploration algorithms—linear search (LS) and golden section search (GSS), finds...

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  • Extended investigation of performance-energy trade-offs under power capping in HPC environments

    Publication

    —In the paper we present investigation of performance-energy trade-offs under power capping using modern processors. The results are presented for systems targeted at both server and client markets and were collected from Intel Xeon E5 and Intel Xeon Phi server processors as well as from desktop and mobile Intel Core i7 processors. The results, when using power capping, show that we can find various interesting combinations of...

  • Energy-Aware High-Performance Computing: Survey of State-of-the-Art Tools, Techniques, and Environments

    The paper presents state of the art of energy-aware high-performance computing (HPC), in particular identification and classification of approaches by system and device types, optimization metrics, and energy/power control methods. System types include single device, clusters, grids, and clouds while considered device types include CPUs, GPUs, multiprocessor, and hybrid systems. Optimization goals include various combinations of...

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  • GPU Power Capping for Energy-Performance Trade-Offs in Training of Deep Convolutional Neural Networks for Image Recognition

    Publication

    In the paper we present performance-energy trade-off investigation of training Deep Convolutional Neural Networks for image recognition. Several representative and widely adopted network models, such as Alexnet, VGG-19, Inception V3, Inception V4, Resnet50 and Resnet152 were tested using systems with Nvidia Quadro RTX 6000 as well as Nvidia V100 GPUs. Using GPU power capping we found other than default configurations minimizing...

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  • Parallel processing of multimedia streams

    Publication

    W artykule zaprezentowana jest nowa biblioteka wspierającą tworzenie zadań obliczeniowych, część platformy KASKADA.Przedstawiony został projekt biblioteki, uwzględniający diagram głównych klas oraz diagram sekwencji. Drugi z diagramów ukazuje współpracę głównych klas w procesie przetwarzania strumieni multimedialnych. W dalszej częsci omówione zostały szczegły mechanizmu komunikacji międzyzadawniowej oraz przedstawiony został graf...

  • Metody testowania platformy KASKADA

    Publication

    W rozdziale przedstawiono wykorzystywany iteracyjny i inkrementalny proces wytwarzania oprogramowania, ze szczególnym uwzględnieniem planowania, wykonywania i śledzenia testów oprogramowania platformy KASKADA. Zaprezentowano model V i przykłady testów jednostkowych, systemowych, wydajnościowych i wiarygodnościowych. Przedstawiono wybrane wyniki testów oraz ich wpływ na konstrukcję platformy.

  • Systemy monitorowania na platformie KASKADA

    Publication

    W artykule znajduje się opis projektu pt. „MAYDAY EURO 2012” Superkomputerowa platforma kontekstowej analizy strumieni danych multimedialnych do identyfikacji wyspecyfikowanych obiektów lub niebezpiecznych zdarzeń. Projekt jest współfinansowany z Europejskiego Funduszu Rozwoju Regionalnego i Budżetu Państwa w ramach Programu Operacyjnego Innowacyjna Gospodarka. KASKADA jest platformą na klastrze komputerowym (superkomputer Galera)...

  • Dystrybucja, archiwizacja i przetwarzanie strumieni multimedialnych na platformie KASKADA

    Publication

    Zaprezentowano metody przetwarzania strumieni multimedialnych na platformie KASKADA. Przedstawiono koncepcję dystrybucji strumieni do zadań obliczeniowych wykonywanych na poszczególnych węzłach klastra komputerowego. Zaprezentowano w jaki sposób dane strumieni są konwertowane i dostosowywane do wykorzystywania przez algorytmy obudowane w tzw. Ramkę KASKADA. Przedstawiono projekt i implementację archiwum strumieni multimedialnych...

  • Energy-Aware Scheduling for High-Performance Computing Systems: A Survey

    Publication

    High-performance computing (HPC), according to its name, is traditionally oriented toward performance, especially the execution time and scalability of the computations. However, due to the high cost and environmental issues, energy consumption has already become a very important factor that needs to be considered. The paper presents a survey of energy-aware scheduling methods used in a modern HPC environment, starting with the...

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  • Dynamic GPU power capping with online performance tracing for energy efficient GPU computing using DEPO tool

    GPU accelerators have become essential to the recent advance in computational power of high- performance computing (HPC) systems. Current HPC systems’ reaching an approximately 20–30 mega-watt power demand has resulted in increasing CO2 emissions, energy costs and necessitate increasingly complex cooling systems. This is a very real challenge. To address this, new mechanisms of software power control could be employed. In this...

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  • KASKADA Platform in Cloud Environment

    Publication

    KASKADA is a computing platform for developing and running services and applications oriented to multimedia processing and data streaming. A solution for serving the platform in the PaaS model is presented. The paper briefly describes the software for creating the private cloud environment based on the OpenStack software. The coud has been deployed to a supercomputer working in C2 NIWA at the Gdansk University of technology. This...

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  • Tryton Supercomputer Capabilities for Analysis of Massive Data Streams

    The recently deployed supercomputer Tryton, located in the Academic Computer Center of Gdansk University of Technology, provides great means for massive parallel processing. Moreover, the status of the Center as one of the main network nodes in the PIONIER network enables the fast and reliable transfer of data produced by miscellaneous devices scattered in the area of the whole country. The typical examples of such data are streams...

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  • Integracja usług multimedialnych na przykładzie platformy KASKADA

    Publication

    Opisano metody integracji wykorzystywane podczas tworzenia aplikacji na platformie KASKADA. Przedstawiono trzy podstawowe elementy podlegające integracji: aplikacje, usługi i urządzenia zewnętrzne. Zaproponowano metody współpracy między nimi, jak również przedstawiono szczegóły techniczne komunikacji: usługi sieciowe dla synchronicznego wykonywania usług, system kolejkowy dla asynchronicznej wymiany wiadomości oraz specjalnie zaprojektowany...