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Wyniki wyszukiwania dla: biological system modeling
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Secondary Structure in Free and Assisted Modeling of Proteins with the Coarse-Grained UNRES Force Field
PublikacjaSecondary structure is a solid scaffold on which the three-dimensional structure of a protein is built. Therefore, care must be taken to reproduce the secondary structure as accurately as possible in the simulations of protein systems. In this chapter, we summarize the physics-based energy terms that govern secondary-structure formation, the auxiliary restraints on secondary structure derived from bioinformatics and from the experimental...
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Adaptive stochastic and hybrid nonlinear optimization algorithms for improving the effectiveness of the biological processes at WWTP
PublikacjaWastewater treatment plays an important factor in the modern world. Insufficient treatment may result in environmental pollution which can further lead to disasters and diseases. However, processes that take place inside wastewater treatment plants (WWTP) are highly complex in nature, therefore it is difficult to design an efficient, optimal control system. The problem regarding biochemical reactions inside Sequential Batch Reactor...
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Web based training system TeleCAD. Teleworkers training for CAD system users
PublikacjaW artykule zaprezentowano internetowy system dostarczania kursów do nauczania na odległość. System został opracowany w ramach projektu Leonardo da Vinci TeleCAD (1998-2001). Pokazano jak system wykorzystywany jest obecnie oraz możliwość wykorzystania w projekcie CURE (Research Framework Programme5, 2003-2005).
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Understanding the Ukrainian Migrants Challenges in the EU: A Topic Modeling Approach
PublikacjaConfronted with the aggression against Ukraine in 2022, Europe faces one of the most important humanitarian challenges - the migration of war refugees from Ukraine, most of them women with children and the elderly. Both international institutions such as the European Union and the United Nations, but also national governments and, above all, local governments, which are the main providers of services and resources for refugees,...
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The Air and Sewage Pollutants from Biological Waste Treatment
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Disturbances of biological N-removal processes in the presence of sulphonamides
PublikacjaBadano podatność na biodegradację oraz wpływ na efektywność nitryfikacji wybranych sulfonamidów (sulfanilamidu SA, sulfacetamidu SCM oraz p-toluenosulfonamidu p-TSA). Podatnośc na biodegradację badano przy użyciu testu OECD 301D (test zamkniętej butelki). Efektywność nitryfikacji miarzono zgodnie z ISO 9509:1989. Stwierdzono, że wszystkie badane związki wykazują bardzo słabą podatność na biodegradację oraz mają wyraźny wpływ na...
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The biological activity of new tuftsin derivatives - induction of phagocytosis
PublikacjaFagocytoza odgrywa ważną rolę w ochronie organizmu przed różnymi mikroorganizmami. Proces ten może być indukowany przez różne czynniki np. endogenny immunomodulator jakim jest tuftsyna czy muramylo-dipeptyd (MDP), najmniejszy syntetyczny glikopeptyd bakteryjnej ściany komórkowej. Zsyntetyzowano nowe analogi MDP i nor-MDP z tuftsyną i retro-tuftsyną, które są zdolne do indukowania fagocytozy. Najbardziej obiecujące okazały się dwa...
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GaMRed – adaptive filtering of high-throughput biological data
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In Vitro Biological Evaluation of Aprepitant Based 177Lu-Radioconjugates
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Thymus vulgaris Essential Oil and Its Biological Activity
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Biological Activity of Tea-Chokeberry and Chokeberry Fermented Beverages
PublikacjaFermented beverages, such as kombucha are gaining more and more popularity due to their beneficial effects on human health. These products are obtained by the fermentation of tea infusion using so called tea fungus. This microbial consortium can also be used to prepare fermented fruit beverages. Therefore, the aim of this study was to determine the changes in the antioxidant profile of tea-chokeberry and chokeberry beverages...
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Reporter Fluorescent Molecules in Biological Systems: The Current Overview
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Biological Inspirations: Iron Complexes Mimicking the Catechol Dioxygenases
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Synthesis and biological activity of tricyclic aryloimidazo-, pyrimido-, and diazepinopurinediones
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Behavior of lipids in biological wastewater treatment plant processes
PublikacjaLipidy (oleje, smary, tłuszcze oraz długołańcuchowe kwasy tłuszczowe) są istotnym składnikiem ścieków. Ich ilość np. w ściekach komunalnych stanowi około 30-40% ogólnej wartości ChZT. Przemiany lipidów w procesach biologicznego oczyszczania są obiektem wielu badań, mimo to nie są do końca poznane i zrozumiane. W pracy przedstawiono przegląd literatury dotyczący przemian lipidów w trakcie tlenowego i beztlenowego oczyszczania ścieków...
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Biological hazards in low noise, poroelastic road surfaces
PublikacjaDrainage pavements as well as poroelastic pavements ("PERS") are a very efficient way to decrease traffic noise by reducing tire/road noise at the source as well as noise propagation over the road surface. Many noise generating mechanisms at the tire/road interface are very much reduced by road porosity (pipe resonance, "air pumping", Helmholtz resonance and the horn effect). A well-designed porous or poroelastic road surface may...
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Biological activity of conjugates of muramyl dipeptides with batracylin derivatives
PublikacjaZaprezentowano immunomodulacyjne właściwości nowych koniugatów batracyliny (BAT) z pochodnymi muramylodipeptydów wobec subpopulacji leukocytów krwi obwodowej hodowanych w obecności komórek linii nowotworowych. Leukocyty izolowane były z krwi obwodowej uzyskanej od zdrowych ochotników. Zbadane koniugaty MDP lub nor-MDP z batracyliną wykazały silniejsze własności hamujące proliferację komórek wybranych linii nowotworowych (K562,...
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Solid Phase Synthesis and Biological Activity of Tuftsin Conjugates
PublikacjaNew tuftsin/retro-tuftsin conjugates were designed and synthesized using a classical fluorenylmethoxycarbonyl (Fmoc) solid phase procedure. All the peptide conjugates were divided into three series: 1,4-dihydroxyanthraquinone (type A), 1-nitroacridine (type B), and 4-carboxyacridone (type C) derivatives. In type A conjugates, the N-terminal group of the peptide chain is directly connected to the anthraquinone ring at C1 (Scheme...
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Fluctuation-Enhanced Sensing for Biological Agent Detection and Identification
PublikacjaPrzedstawiono wcześniejsze wyniki badań dotyczące trzech różnych sposobów wykrywania obecności substancji biologicznych za pomocą zjawisk fluktuacyjnych: 1) wirusów wnikających do komórek, 2) zapachów emitowanych przez mikroby, 3) rozkładu widma i wartości chwilowych szumów podczas rozpraszania światła używanego do wykrywania zarodników na podstawie wyznaczenia współczynnika dyfuzji opisująceo ich ruch.We survey and show our earlier...
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An analysis of pesticides and polychlorinated biphenyls in biological samples and foods.
PublikacjaPestycydy i polichlorowane bifenyle występują w środowisku w małych ilościach, ale ulegając kumulacji, stanowią zagrożenie dla ludzi i zwierząt. Najbardziej zagrożony jest człowiek stojący na szczycie łańcucha pokarmowego. Świadomość niebezpieczeństw jakie niesie ze sobą postępujące zanieczyszczenie środowiska w połączeniu z nowoczesnymi środkami zaradczymi powinna zmniejszyć do minimum możliwość występowania zatruć u ludzi i powstania...
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Investigation of biological and photochemical treatment of municipal landfill leachates
PublikacjaW pracy przedstawiono rezultaty badań charakterystyki oraz efektywności foto- oraz biodegradacji odcieków z dwóch składowisk komunalnych w północnej Polsce. Celem pracy było zbadanie efektywności oczyszczania w systemie UV, UV/H2O2 oraz możliwości biologicznego oczyszczania odcieków metodą osadu czynnego. Stosowanie metody kombinowanej (UV/H2O2/osad czynny) pozwoliło na uzyskanie lepszej efektywności oczyszczania (98% spadek wartości...
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Biological activity of conjugates of muramyl dipeptides with batracylin derivatives
PublikacjaW artykule opisano aktywność biologiczną koniugatów muramylo-dipeptydów z batracyliną lub pochodnymi batracyliny. Badania przeprowadzone w Akademii Medycznej w Gdańsku miały na celu oznaczenie immunomodulacyjnych właściwości tych koniugatów wobec subpopulacji leukocytów krwi obwodowej hodowanych w obecności komórek nowotworowych (K562, WEHI164, Ab melanoma). Leukocyty izolowane były z krwi obwodowej uzyskanej od zdrowych ochotników....
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Information System for Drivers Within the Integrated Traffic Management System - TRISTAR
PublikacjaAdvanced traveler information systems (ATIS) for drivers are a very important element of modern traffic management. In recent years ITS infrastructure is being developed also in Poland. It allows for delivering to drivers information related to the conditions in the road network through, inter alia, dedicated Variable Message Signs (VMS). Such information enables drivers to take decisions, contributing to improving the efficiency...
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On Inadequacy of Sequential Design of Experiments for Performance-Driven Surrogate Modeling of Antenna Input Characteristics
PublikacjaDesign of contemporary antennas necessarily involves electromagnetic (EM) simulation tools. Their employment is imperative to ensure evaluation reliability but also to carry out the design process itself, especially, the adjustment of antenna dimensions. For the latter, traditionally used parameter sweeping is more and more often replaced by rigorous numerical optimization, which entails considerable computational expenses, sometimes...
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Dynamic Modeling of COVID-19 Disease with Impact of Lockdown in Pakistan and Malaysia
PublikacjaBeing researchers, it is an utmost responsibility to provide insight on social issues thus, this work addresses the dynamic modeling of first and most contagious disease named as COVID-19 caused by coronavirus. The first case of COVID-19 appeared in Pakistan was on 26th February 2020 and in Malaysia on 27th February 2020; both patients had foreign travel history. In the paper, the number of total affected cases and total deaths...
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System do prototypowania bezprzewodowych inteligentnych urządzeń monitoringu audio-video
PublikacjaW komunikacie przedstawiono system prototypowania bezprzewodowych urządzeń do monitoringu audio-video. System bazuje na układach FPGA Virtex6 i wielu dodatkowych wspierających urządzeniach jak: szybka pamięć DDR3, mała kamera HD, mikrofon z konwerterem A/C, moduł radiowy WiFi, itp. Funkcjonalność systemu została szczegółowo opisana w komunikacie. System został zoptymalizowany do pracy pod kontrolą systemu operacyjnego Linux, zostały...
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System dozoru technicznego
PublikacjaSystem dozoru technicznego1. Podstawa działania2. Struktura organizacyjna i kompetencje3. Strategia działania
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Comparative study of neural networks used in modeling and control of dynamic systems
PublikacjaIn this paper, a diagonal recurrent neural network that contains two recurrent weights in the hidden layer is proposed for the designing of a synchronous generator control system. To demonstrate the superiority of the proposed neural network, a comparative study of performances, with two other neural network (1_DRNN) and the proposed second-order diagonal recurrent neural network (2_DRNN). Moreover, to confirm the superiority...
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Achieving Efficient and Stable Deammonification at Low Temperatures—Experimental and Modeling Studies
PublikacjaThe short-term effects of temperature on deammonification sludge were evaluated in a laboratory-scale sequencing batch reactor (SBR). Mathematical modeling was used for further evaluations of different intermittent aeration strategies for achieving high and stable deammonification performance at decreasing temperatures. As for the biomass cultivated at high temperatures (e.g., 30 C), a higher temperature dependency (the adjusted...
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Modeling lignin extraction with ionic liquids using machine learning approach
PublikacjaLignin, next to cellulose, is the second most common natural biopolymer on Earth, containing a third of the organic carbon in the biosphere. For many years, lignin was perceived as waste when obtaining cellulose and hemicellulose and used as a biofuel for the production of bioenergy. However, recently, lignin has been considered a renewable raw material for the production of chemicals and materials to replace petrochemical resources....
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THE CONCEPT OF MODELING OF SNOW IMPACT ON THE STRUCTURE OF THE SUSPENDED TAURON ARENA ROOF IN CRACOW
PublikacjaThe article presents studies and numerical simulations on modeling snow influence on TAURON ARENA suspended roof structure in Cracow. The scope of work includes experimental tests, functions solutions taking into account various cases of snow impact according to PN and EC, as well as numerical simulations for the sport and entertainment arena in the Czyzyny district. The FEM roof structure model developed in the SOFISITK software...
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Time Domain Modeling of Propeller Forces due to Ventilation in Static and Dynamic Conditions
PublikacjaThis paper presents experimental and theoretical studies on the dynamic effect on the propeller loading due to ventilation by using a simulation model that generates a time domain solution for propeller forces in varying operational conditions. For ventilation modeling, the simulation model applies a formula based on the idea that the change in lift coefficient due to ventilation computes the change in the thrust coefficient. It...
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Hybrid RFID system
PublikacjaOpis koncepcji zintegrowanego systemu RFID w połączeniu z innymi technologiami sensorów tworzących hybrydowy system RFID.
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Weather Hazard Avoidance in Modeling Safety of Motor-Driven Ship for Multicriteria Weather Routing
PublikacjaWeather routing methods find the most suitable ocean?s route for a vessel, taking into account changeable weather conditions and navigational constraints. In the multicriteria approach based on the evolutionary SPEA algorithm one is able to consider a few constrained criteria simultaneously. The approach applied for a ship with hybrid propulsions has already been presented by one of the authors on previous TransNav?2009. This time...
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Rapid Design of 3D Reflectarray Antennas by Inverse Surrogate Modeling and Regularization
PublikacjaReflectarrays (RAs) exhibit important advantages over conventional antenna arrays, especially in terms of realizing pencil-beam patterns without the employment of the feeding networks. Unfortunately, microstrip RA implementations feature narrow bandwidths, and are severely affected by losses. A considerably improved performance can be achieved for RAs involving grounded dielectric layers, which are also easy to manufacture using...
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Modeling of Surface Roughness in Honing Processes by UsingFuzzy Artificial Neural Networks
PublikacjaHoning processes are abrasive machining processes which are commonly employed to improve the surface of manufactured parts such as hydraulic or combustion engine cylinders. These processes can be employed to obtain a cross-hatched pattern on the internal surfaces of cylinders. In this present study, fuzzy artificial neural networks are employed for modeling surface roughness parameters obtained in finishing honing operations. As...
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LTE as a Trunking - Dispatch System
PublikacjaIn the paper solutions of trunking-dispatch systems based on the LTE system are presented. The solution in the form of separate LTE/TDD trunking system is discussed, and the concept of the LTE/FDD trunking system operating in the infrastructure of public, mobile networks is characterised.
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System architecture of an INSPIRE-compliant green cadastre system for the EU Member State of Poland
PublikacjaIn response to the need for a sustainable agricultural policy, which would support activities such as decision making in precise agriculture and mitigation of crop threats, a concept agricultural information system was developed for the area of Poland. This innovative concept, called Green Cadastre (GC), proposes to create a uniform system designed for use on a national scale by both state administration as well as local farmers....
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Systems, Environments, and Soliton Rate Equations: Toward Realistic Modeling
PublikacjaIn order to solve a system of nonlinear rate equations one can try to use some soliton methods. The procedure involves three steps: (1) find a ‘Lax representation’ where all the kinetic variables are combined into a single matrix ρ, all the kinetic constants are encoded in a matrix H; (2) find a Darboux–Bäcklund dressing transformation for the Lax representation iρ˙=[H,f(ρ)], where f models a time-dependent environment; (3) find...
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Modeling N2O behavior during denitrification with different carbon sources and electron acceptors
PublikacjaA mathematical model was developed for identification of the most important mechanism leading to nitrous oxide (N2O) accumulation in denitrifying activated sludge systems. The activated sludge model No. 2d (ASM2d) was extended to include intermediate three steps of the denitrification process. The formation and accumulation of nitric oxide (NO) was assumed to be very low in the performed laboratory experiments. These experiments...
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Automatyczny system pomiarów przyciągania
PublikacjaW artykule opisano system pomiarowy przeciążeń występujących podczas ruchu kończyn. System składa się z zestawu akcelerometrów podłączonych przez kartę pomiarową do komputera. Proponowany system można użyć np. jako pomoc w diagnostyce lekarskiej.
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Security Mechanisms in the Comcute System
PublikacjaThe aim of this paper is pointing out the basic security problems and mechanisms in the Comcute system - maintenance system of large computing power in the face of critical crisis. Moreover security mechanism and tools useful to apply in laboratory model as well as target version of the Comcute system are presented.
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Surrogate modeling of impedance matching transformers by means of variable‐fidelity electromagnetic simulations and nested cokriging
PublikacjaAccurate performance evaluation of microwave components can be carried out using full‐wave electromagnetic (EM) simulation tools, routinely employed for circuit verification but also in the design process itself. Unfortunately, the computational cost of EM‐driven design may be high. This is especially pertinent to tasks entailing considerable number of simulations (eg, parametric optimization, statistical analysis). A possible...
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Modeling by finite element methods of impact of erosion on frequency of normal modes of L-0 blade
PublikacjaAfter some time of exploitation steam turbine rotors blades in energetic industry they are being eroded and also their frequency of normal modes is changed. Those changes can cause to unwanted shift of blades normal mode frequencies. It is necessary to find quick method of rating changes of frequency in connection of mass loss due erosion. The evaluation of this dependence was made by finite element modeling method using HyperWorks...
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Uniform sampling in constrained domains for low-cost surrogate modeling of antenna input characteristics
PublikacjaIn this letter, a design of experiments technique that permits uniform sampling in constrained domains is proposed. The discussed method is applied to generate training data for construction of fast replacement models (surrogates) of antenna input characteristics. The modeling process is design-oriented with the surrogate domain spanned by a set of reference designs optimized with respect to the performance figures and/or operating...
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How do sterols determine the antufungal activitiy of amphotericin B? Free energy of binding between the drug and its membrane targets.
PublikacjaAmphotericin B (AmB) is a well-known polyene antibiotic used to treat systemic fungal infections. It is commonly accepted that the presence of sterols in the membrane is essential for the AmB biological activity, that is, for the formation of transmembrane ion channels. The selective toxicity of AmB for fungal cells is attributed to the fact that it is more potent against fungal cell membranes containing ergosterol than against...
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Obtaining and Characterization of the PLA/Chitosan Foams with Antimicrobial Properties Achieved by the Emulsification Combined with the Dissolution of Chitosan by CO2 Saturation
PublikacjaA new method of obtaining functional foam material has been proposed. The materials were created by mixing the poly lactic acid (PLA) solution in chloroform, chitosan (CS) dissolved in water saturated with CO2 and polyethylene glycol (PEG), and freeze-dried for removal of the solvents. The composite foams were characterized for their structural (SEM, FT-IR, density, porosity), thermal (DSC), functional (hardness, elasticity, swelling...
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Photosensitive and pH-dependent activity of pyrazine-functionalized carbazole derivative as promising antifungal and imaging agent
PublikacjaCarbazole skeleton plays a significant role as a structural scaffold of many pharmacologically active compounds. Pyrazine-functionalized carbazole derivative was constructed by coupling 2-amino-5-bromo-3-methylaminepyrazine (ABMAP) into 3 and 6 positions of the carbazole ring. Multi-experimental methods were used, e.g., potentiometric, spectroscopic (ATR, UV, XRD powder,1H and13C NMR), electrochemical (cyclic voltammetry), and...
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Process Control of Biogas Purification Using Electronic Nose
PublikacjaNowadays, biogas produced from landfills and wastewater treatment plants or lignocellulosic biomass is important sustainable and affordable source of energy. Impurities from biogas stream can cause a serious odor problem, especially for residents of areas immediately adjacent to production plants. Therefore, biogas pre-treatment is necessary to protect engines that convert biogas into energy and in order to increase the specific...
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A Data Driven Model for Predicting RNA-Protein Interactions based on Gradient Boosting Machine
PublikacjaRNA protein interactions (RPI) play a pivotal role in the regulation of various biological processes. Experimental validation of RPI has been time-consuming, paving the way for computational prediction methods. The major limiting factor of these methods has been the accuracy and confidence of the predictions, and our in-house experiments show that they fail to accurately predict RPI involving short RNA sequences such as TERRA RNA....