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Search results for: liquid biopsy
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Diagnostic Accuracy of Liquid Biopsy in Endometrial Cancer
PublicationBackground: Liquid biopsy is a minimally invasive collection of a patient body fluid sample. In oncology, they offer several advantages compared to traditional tissue biopsies. However, the potential of this method in endometrial cancer (EC) remains poorly explored. We studied the utility of tumor educated platelets (TEPs) and circulating tumor DNA (ctDNA) for preoperative EC diagnosis, including histology determination. Methods:...
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Towards Cancer Patients Classification Using Liquid Biopsy
PublicationLiquid biopsy is a useful, minimally invasive diagnostic and monitoring tool for cancer disease. Yet, developing accurate methods, given the potentially large number of input features, and usually small datasets size remains very challenging. Recently, a novel feature parameterization based on the RNA-sequenced platelet data which uses the biological knowledge from the Kyoto Encyclopedia of Genes and Genomes, combined with a classifier...
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Liquid Biopsy in Melanoma: Significance in Diagnostics, Prediction and Treatment Monitoring
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Deep Learning-Based, Multiclass Approach to Cancer Classification on Liquid Biopsy Data
PublicationThe field of cancer diagnostics has been revolutionized by liquid biopsies, which offer a bridge between laboratory research and clinical settings. These tests are less invasive than traditional biopsies and more convenient than routine imaging methods. Liquid biopsies allow studying of tumor-derived markers in bodily fluids, enabling the development of more precise cancer diagnostic tests for screening, disease monitoring, and...
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Deep Learning-Based, Multiclass Approach to Cancer Classification on Liquid Biopsy Data
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Potential of Liquid Biopsy in Papillary Thyroid Carcinoma in Context of miRNA, BRAF and p53 Mutation
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Determination of amikacin and ciprofloxacin by liquid chromatography with pre-column derivatization to evaluate sustained delivery of antibiotics from Drug-Eluting Biopsy Needle
PublicationDetermination of chosen antibacterial antibiotics: amikacin and ciprofloxacin was carried out by HPLC-UV after derivatization with 9-fluorenylmethyl chloroformate and in their native form by HPLC-MS/MS. Developed methods have been applied to control the kinetics of antibiotic release from polymer-based controlled drug delivery system.
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Drug-Eluting Biopsy Needle as a Novel Strategy for Antimicrobial Prophylaxis in Transrectal Prostate Biopsy
PublicationOBJECTIVES: To preclinically evaluate drug-eluting biopsy needles (patent pending WO2016118026) as a new potential way of antimicrobial prophylaxis for transrectal prostate biopsy. METHODS: Twenty steel biopsy needles have been coated with polyvinyl alcohol, ciprofloxacin, and amikacin. Modified biopsy needles have been randomly divided into 3 groups (1:2:1 ratio). Needles from group I were immersed for 30 minutes in dedicated...
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Biopsy needles coated with the antimicrobial coatings
PublicationDrug delivery systems are used to achieve higher therapeutic effects of medicaments in a specific diseased site with minimal toxicological effect. The used of biopolymers in drug delivery systems ensure the biocompatibility, biodegradability and low immunogenicity. Drug delivery systems enhance the drug delivery actively and can be used in different diseases. In this study, two types of polymer coatings were prepared and were...
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Improving platelet‐RNA‐based diagnostics: a comparative analysis of machine learning models for cancer detection and multiclass classification
PublicationLiquid biopsy demonstrates excellent potential in patient management by providing a minimally invasive and cost-effective approach to detecting and monitoring cancer, even at its early stages. Due to the complexity of liquid biopsy data, machine-learning techniques are increasingly gaining attention in sample analysis, especially for multidimensional data such as RNA expression profiles. Yet, there is no agreement in the community...
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Detection of circulating tumor cells by means of machine learning using Smart-Seq2 sequencing
PublicationCirculating tumor cells (CTCs) are tumor cells that separate from the solid tumor and enter the bloodstream, which can cause metastasis. Detection and enumeration of CTCs show promising potential as a predictor for prognosis in cancer patients. Furthermore, single-cells sequencing is a technique that provides genetic information from individual cells and allows to classify them precisely and reliably. Sequencing data typically...
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Fluorescence Imaging Using Methylene Blue Sentinel Lymph Node Biopsy in Melanoma
PublicationIntroduction: Fluorescence imaging of sentinel node biopsy in melanoma is a novel method. Both indocyanine green (ICG) and methylene blue (MB) have fl uorescent properties. The aim of this study was to present, for the fi rst time in a clinical series of patients, the possible usage of MB as a fl uorescent dye for sentinel node biopsy during surgery for melanoma. Material and methods: Twenty patients with...
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Effects of CO2 and utilization of spent trickling liquid towards plant growth
Open Research DataDataset presents the results of biomass yield for Phaseolus vulgaris pot cultures watered with diluted trickling liquid from biotrickling filtration experiments with or without additional CO2 in air by means of introducting post-biofilter air to the plant culture.
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Biotrickling filtration of air polluted with hexane and cyclohexane: effects of trickling liquid modification with DES solutions
Open Research DataDataset presents selected parameters monitored during processes of biotrickling filtration of air polluted with hexane and cyclohexane.
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Chromium FTW dataset
Open Research DataThis dataset contains the results of chromium and nutrients (N and PO4-P) removal in floating treatment wetland microcosm experiment with two cosmopolitan species of parennials: Phragmites australis and Iris pseudacorus.
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Methylene Blue Near-Infrared Fluorescence Imaging in Breast Cancer Sentinel Node Biopsy
PublicationIntroduction: Fluorescence-based navigation for breast cancer sentinel node biopsy is a novel method that uses indocyanine green as a fluorophore. However, methylene blue (MB) also has some fluorescent properties. This study is the first in a clinical series presenting the possible use of MB as a fluorescent dye for the identification of sentinel nodes in breast sentinel node biopsy. Material and methods: Forty-nine patients with...
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Effects of liquid phase modification on the performance of biotrickling filters
Open Research DataDataset presents the effects of liquid phase modification on the biotrickling filtration (BTF) performance of air polluted with toluene, ethylbenzene, xylene and styrene.
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High prevalence of Escherichia coli belonging to the B2+D phylogenetic group in inflammatory bowel disease
PublicationBACKGROUND: It is not clear which species of bacteria may be involved in inflammatory bowel disease (IBD). One way of determining which bacteria might be likely candidates is to use culture-independent methods to identify microorganisms that are present in diseased tissues but not in controls. AIMS: (1) To assess the diversity of microbial communities of biopsy tissue using culture-independent methods; (2) to culture the bacteria...
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Intra-operative biopsy in chronic sinusitis detects pathogenic Escherichia coli that carry fimG/H, fyuA and agn43 genes coding biofilm formation
PublicationThe aim of this study was to investigate whether or not surgical biopsy of sinus tissue in chronic sinusitis, not responsive to treatment, would detect E. coli. We intended to evaluate E. coli virulence genes, therefore dispute the causal role of such an unusual microorganism in chronic sinusitis, as well as consider effective pathogen-targeted therapy. Patients with E. coli isolated by intra-operative puncture biopsy were included...
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Refractive index measurement in the range of 1.3 – 1.5 for 1550 nm wavelength (2nd serie)
Open Research DataThe low-coherence refractive index measurements of certified liquid samples provided by Cargille Labs were performed. The measurement system consisted of a broadband light source (central wavelength of 1550 nm), an optical spectrum analyzer, a 2x1 fiber-optic coupler (50:50 power split), and single-mode telecommunication optical fibers. A micromechanical...
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Refractive index measurement in the range of 1.3 – 1.5 for 1550 nm wavelength (1st serie)
Open Research DataThe low-coherence refractive index measurements of certified liquid samples provided by Cargille Labs were performed. The measurement system consisted of a broadband light source (central wavelength of 1550 nm), an optical spectrum analyzer, a 2x1 fiber-optic coupler (50:50 power split), and single-mode telecommunication optical fibers. A micromechanical...
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Effects of liquid phase modification on the values of surface tension of trickling liquid
Open Research DataDataset presents the values of surface tension of trickling liquid sampled from three running biotrickling filters.
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Rain Gardens GC_MS analysis dataset
Open Research DataThis dataset contains the results of samples analysis (no-target analysis: scan mode) using gas chromatography coupled with mass spectrometry GC–MS (GC-2030 NEXIS MS, Shimadzu, Japan or Thermo Scientific, Waltham, USA).
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Determination of the content of saccharides and ethanol in samples of fermented beverages
Open Research DataThe data set presents the results of measurements of the content of mono- and disaccharides: glucose, maltose, fructose and ethanol in samples of beverages fermented by high performance liquid chromatography (HPLC-RID).
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Examples of AFM applications in liquid environment
Open Research DataImportant advantage of atomic force microscopy (also tunneling microscopy) is the ability to work in different environments (vacuum, controlled atmosphere, liquid environment). The last one, open interesting possibilities, such as imaging of delicate biological materials in their natural state. The use of electrochemical mode allows for the modification...
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Photoluminescence spectra of TiO2
Open Research DataThese data contain photoluminescence spectra of TiO2 measured at the temperature of liquid nitrogen. There is a comparison of the photoluminescence spectra of TiO2 heat treated at 400-600oC in the ambient (Ar) and reduced (H2) atmospheres. These emission spectra were recorded after TiO2 excitation with a wavelength of 290 nm
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Kinetics of hexane and cyclohexane biodegradation using Candida subhashii in mineral salt medium in the presence of DES solution
Open Research DataDataset presents results of investigations on kinetics of biodegradation of hexane and cyclohexane in Candida subhashii.
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Terahertz Dual-Band Metamaterial Biosensor for Cervical-Cancer Diagnostics
PublicationThis study highlights the potential of employing terahertz metamaterial structures as dual-band biosensors for the early detection of cancerous biological tissue. The fundamental principle leveraged here is the alteration of the effective dielectric constant of biological tissue by cancerous cells. The change in the dielectric constant, in turn, induces a shift in the resonance frequency of the metamaterial sensor. One notable...
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Tensile test of 1.4307 / X2CrNi18-9 / AISI 304L grade austenitic steel
Open Research DataShip structures and their components are build mainly of steel. Hull steel is used to build the hull structure. Some structural elements, such as RSW (Refrigerated See Water) tanks, or LNG (Liquid Natural Gas) tanks - gas transported at temperatures below -162° C, are build from austenitic steels. Austenitic steels have a different microstructure and...
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Tensile test of 1.4541 / X6CrNi18-10 / AISI 321 grade austenitic steel
Open Research DataShip structures and their components are build mainly of steel. Hull steel is used to build the hull structure. Some structural elements, such as RSW (Refrigerated See Water) tanks, or LNG (Liquid Natural Gas) tanks - gas transported at temperatures below -162° C, are build from austenitic steels. Austenitic steels have a different microstructure and...
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Tensile test of 1.4571 / X6CrNiMoTi17-12-2 / AISI 316Ti grade austenitic steel
Open Research DataShip structures and their components are build mainly of steel. Hull steel is used to build the hull structure. Some structural elements, such as RSW (Refrigerated See Water) tanks, or LNG (Liquid Natural Gas) tanks - gas transported at temperatures below -162° C, are build from austenitic steels. Austenitic steels have a different microstructure and...
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Rain Gardens SW quality dataset
Open Research DataThis dataset contains the results of parameters of storm water runoff and storm water quality in rain garden units. Samples were collected from 4 different rain gardens in Gdansk, Poland.
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Measurement of mass flow of viscous liquid through a Cylindrical Orifice under laminar flow (CylOr)
Open Research DataThe data was obtained as part of the project "Measurement of mass flow of viscous liquid through a Cylindrical Orifice under laminar flow (CylOr)", in which flow tests of hydraulic oil through a cylindrical orifice with a thickness of l = 25 mm and a throat b = 0.5 (diameter pipes D = 50 mm, orifice diameter d = 25 mm) on the test stand at the Department...
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Rain Gardens LC_MS/MS analysis dataset
Open Research DataThis dataset contains the results of samples analysis (target analysis with certified reference materials) using ultra-high performance liquid chromatography tandem mass spectrometry (UHPLC-MS/MS, Shimadzu, Japan).
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3D point cloud as a representation of silo / tank
Open Research DataThe product presents a point cloud in the set of coordinates X Y Z. The data was obtained by terrestrial laser scanning and its processing for the analysis of tanks geometry. The development process indicates the possibility to obtain the reliable results useful for the evaluation of the tank side surfaces geometry.
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Processes and pathways of nutrients, selected heavy metal and arsenic removal from surface runoff from the agricultural and urban catchments in floating treatment wetlands - microcosm study nutrients results
Open Research DataA dataset containing results of nutrients (N and P) concentrations in synthetic effluents (simulating surface runoff contaminated with nutrients, metals - Cu, Cd, and Pb, and metalloid - As) treated with 4 native macrophytes: Phragmites australis, Iris pseudacorus, Typha latifolia, and Alisma plantago aquatica. Nitrogen and phosphorus (total phosphorus,...
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SEM images of Mo2Ga2C MAX material
Open Research DataIn the dataset, are included SEM images of molybdenum gallium carbide MAX materials.
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Comprehensive Review of Fluorescence Applications in Gynecology
PublicationSince the introduction of indocyanine green (ICG) as a fluorophore in near-infrared imaging, fluorescence visualization has become an essential tool in many fields of surgery. In the field of gynecology, recent new applications have been proposed and found their place in clinical practice. Different applications in gynecology were investigated, subcategorized, and overviewed concerning surgical applications and available dyes....
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CERVIX UTERI, Exocervix - Female, 45 - Cell image [3160630004828311]
Open Research DataThis is the histopathological image of CERVIX UTERI cell sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format.
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CERVIX UTERI, Exocervix - Female, 43 - Cell image [7050730000139361]
Open Research DataThis is the histopathological image of CERVIX UTERI cell sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format.
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Selection of DES for biotrickling filtration of air polluted with hexane and cyclohexane
Open Research DataDataset covers selected data collected during selection of deep eutectic solvent (DES) additive to mineral salt medium (MSM) as a liquid phase during biotrickling filtration of air polluted with hexane and cyclohexane.
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Escherichia coli Strains with Virulent Factors Typical for Uropathogens were Isolated from Sinuses from Patients with Chronic Rhinosinusitis—Case Report
PublicationEscherichia coli were isolated from three patients with chronic rhinosinusitis (CRS) by intraoperative sinus tissue biopsy. Taking into account the unusual replicative niche and previous treatment failures, it was decided to focus on the virulence and drug resistance of these bacteria. The strains turned out to be multi-sensitive, but the rich virulence factors profile of bacteria typical for phylogenetic group B2 deserved attention....
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Artificial Intelligence in the Diagnosis of Onychomycosis—Literature Review
PublicationOnychomycosis is a common fungal nail infection that is difficult to diagnose due to its similarity to other nail conditions. Accurate identification is essential for effective treatment. The current gold standard methods include microscopic examination with potassium hydroxide, fungal cultures, and Periodic acid-Schiff biopsy staining. These conventional techniques, however, suffer from high turnover times, variable sensitivity,...
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The luminescence study of (C10H16N)2MnBr4 Organic–Inorganic Hybrid
Open Research DataOrganic–inorganic hybrid metal halides have recently attracted attention in the global research field for their bright light emission, tunable photoluminescence wavelength, and convenient synthesis method. This study reports the detailed properties of (C10H16N)2MnBr4, which emits bright green light with a high photoluminescence quantum yield. Results...
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Designing a high-sensitivity dual-band nano-biosensor based on petahertz MTMs to provide a perfect absorber for early-stage non-melanoma skin cancer diagnostic
PublicationThe purpose of this study is development of a novel high-performance low-Petahertz (PHz) biosensor for non-melanoma skin cancer (NMSC) diagnosis. The presented device is designed to work within a microwave imaging regime, which is a promising alternative to conventional diagnostic methods such as visual examination, dermoscopy, and biopsy. The suggested biosensor incorporates a dual-band perfect absorber (operating bands at 0.909...
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CERVIX UTERI, Exocervix - Female, 65 - Cell image [7050730000137571]
Open Research DataThis is the histopathological image of CERVIX UTERI cell sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format.
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Testing of DES toxicity towards Candida subhashii
Open Research DataDataset presents results of testing toxicity of selected DES solutions in mineral salt medium towards Candida subhashii.
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Numerical Study of the Impinging Jets Formed by an Injector with Different Nozzle Diameters
Open Research DataThe data set contains the simulation files related to the research paper “Numerical Study of the Impinging Jets Formed by an Injector with Different Nozzle Diameters”, https://doi.org/10.4271/2022-01-1080.
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DIAGNOSIS OF MALIGNANT MELANOMA BY NEURAL NETWORK ENSEMBLE-BASED SYSTEM UTILISING HAND-CRAFTED SKIN LESION FEATURES
PublicationMalignant melanomas are the most deadly type of skin cancer but detected early have high chances for successful treatment. In the last twenty years, the interest of automated melanoma recognition detection and classification dynamically increased partially because of public datasets appearing with dermatoscopic images of skin lesions. Automated computer-aided skin cancer detection in dermatoscopic images is a very challenging task...
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Analytical and reliability data from the real-time simulator biogas plant
Open Research DataThe dataset represents the results of biogas plant simulation. The described plant is an agricultural biogas system, which can produce electrical energy with power estimated up to 1070 kW and heat energy that can reach 1200 kW simultaneously.