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Unraveling the Interplay between DNA and Proteins: A Computational Exploration of Sequence and Structure-Specific Recognition Mechanisms
PublicationMy PhD dissertation focused on DNA-protein interactions and the recognition of specific DNA sequences and structures. I discovered that acidic amino acid residues (Asp/Glu) play a crucial role by exhibiting a preference for cytosine. Their contribution to binding affinity depends on nearby cytosines, balancing electrostatic repulsion with specific interactions. Acidic residues act as negative selectors, discouraging non-cytosine...
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Review on the quality of sediments from the stormwater drainage system in the urban area
PublicationThe main task of the stormwater drainage system is a safe drainage of rainwater and snowmelt from the urban area to the receiver. The flow of rain water in the drainage pipes is directly related with the formation of sediments in the whole stormwater system. In addition, pollutants from land runoff get adsorbed to the sediments. The sludge is mainly formed in those elements of stormwater drainage system, wherein the flow conditions...
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The Impact of Weather on Traffic Speed in Urban Area
PublicationThe issue of the impact of weather conditions on trip speed of vehicles has been studied for a long time and it is still the subject of many scientific researches. The impact of atmospheric conditions on the speed with which drivers drive their vehicles seems to be obvious. Good weather conditions, sunny weather with good visibility surely provokes higher speed while rainfall, wind...
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Rapid Assays for Specific Detection of Fungi of Scopulariopsis and Microascus Genera and Scopulariopsis brevicaulis Species
PublicationPurpose Fungi of Scopulariopsis and Microascus genera cause a wide range of infections, with S. brevicaulis being the most prevalent aetiological agent of mould onychomycosis. Proper identification of these pathogens requires sporulating culture, which considerably delays the diagnosis. So far, sequencing of rDNA regions of clinical isolates has produced ambiguous results due to the lack of reference sequences in publicly available...
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Italian Journal of Gender-Specific Medicine
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An improvement of body surface area formulas using the 3D scanning technique
PublicationObjectives: Body surface area (BSA) is one of the major parameters used in several medical fields. However, there are concerns raised about its usefulness, mostly due to the ambiguity of its estimation. Material and Methods: Authors have conducted a voluntary study to investigate BSA distribution and estimation in a group of 179 adult people of various sex, age, and physique. Here, there is provided an extended analysis of the...
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Novel method of lung area extraction in chest perfusion computed tomography
PublicationChest perfusion computed tomography (pCT) is a useful technique in the medical diagnosis of how organs function. Perfusion CT scans are used to calculate perfusion parameters. In the case of automated methods of lung perfusion parameters calculation, the prior extraction of the lung area is desired to avoid unnecessary calculation in an area outside the lung cross-section and to avoid wasting time on processing signals of no diagnostic...
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Identification of Leaf Rust Resistance Genes in Selected Wheat Cultivars and Development of Multiplex PCR
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Biological activities of leaf extracts from selected Kalanchoe species and their relationship with bufadienolides content
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Protective Effect of Morus alba Leaf Extract on N-Nitrosodiethylamine-induced Hepatocarcinogenesis in Rats
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Incorporation of engineered nanoparticles of biochar and fly ash against bacterial leaf spot of pepper
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Developing a Metropolitan Transport System—Exemplified by the Gdansk–Gdynia–Sopot Metropolitan Area
PublicationAs regional centres with metropolitan functions, metropolises grow and develop depending on how well they can meet the area’s transport needs internally and externally, a result of their socio-economic relations. The transport system of a metropolitan area must ensure that people and goods can move efficiently, effectively and environmentally friendly. Over the last ten years, the transport system of the Gdańsk–Gdynia–Sopot Metropolitan...
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Implementation of spatial information for monitoring and analysis of the area around the port using laser scanning techniques
PublicationNowadays, maritime infrastructure is heavily exploited, which requires monitoring. The article presents the implementation of spatial information which are point clouds for monitoring and analysis of the area around the port (buildings and wharves). For this study, point clouds coming from terrestrial (TLS) and airborne laser scanning (ALS), each of them having different accuracy, were used. An important part of the analysis was...
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Modelling Coarse Particulate Matter PM10 Concentration in the Tricity Area Using GIS
PublicationEnvironmental pollution is an issue of global concern, with Particulate Matter (PM) poisoning being a prime cause of lung cancer. This has led the European Commission to establish strict daily and annual PM concentration limits. The monitoring of air quality in major cities is the responsibility of European Member States. The Tricity, a 414.81 km 2 area in northern Poland, is monitored by a network of only 9 stations operated by...
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The state of the art in the field of decrease the pollution in the South Baltic area
PublicationVarious form of human activity such as maritime transports, industrial activities, busy traffic, intensive farming and animal husbandry can have negative impact on natural marine environment. Baltic Sea catchment area is characterized by the high river water flux and wastewater treatment plants discharges. Additionally, the limited shallow connection to the North Sea results in little water exchange and residence time of approximately...
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DDLMS PCR double digestion Ligation Mediated Suppression PCR - a new technique for bacterial specific differentiation
PublicationA new diagnostic kit for K. oxytoca specific differentiation based on ddLMS PCR (ang. double digest ligation Mediated PCR) technique is shown. As a species-specific DNA fragment pehX gene, encoding the enzyme polygalactouronase, was chosen. The genome sequence of K. oxytoca is digested with two endonucleases: AclI and BclI which cut DNA before and after pehX gene. The polymorphic DNA fragments are ligated with AclI-end-specific...
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Development of Domain-Specific Solutions within the Polish Infrastructure for Advanced Scientific Research
PublicationThe Polish Grid computing infrastructure was established during the PL-Grid project (2009-2012). The main purpose of this Project was to provide the Polish scientists with an IT basic platform, allowing them to conduct interdisciplinary research on a national scale, and giving them transparent access to international grid resources via international grid infrastructures. Currently, the infrastructure is maintained and extended...
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Role of the Lakes in Groundwater Recharge and Discharge in the Young Glacial Area, Northen Poland
PublicationThe aim of this research was to delineate characteristic hydrogeological lake types in the Young Glacial Area (YGA). The YGA is in the central and east part of the Kashubian Lake District (KLD) in Northern Poland, an area covered by deposits of Quaternary glaciation. All the bigger lakes were investigated in the area of about 1500 km2 (39 lakes). The role of lakes in groundwater recharge and discharge was determined from total...
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The Role of an Integrated Transport System in the Comprehensive, Polycentric Development of Gdańsk Bay Metropolitan Area
PublicationIn this paper the role of an integrated transport system and mobility in the development of Gdańsk Bay Metropolitan Area is discussed, with special emphasis on how it influences the development of comprehensive, polycentric urban structures. The paper consists of an analysis of how the changes, which occurred after the socio-economic transformation shaped the transport system, and as a consequence the spatial structure, of Gdańsk...
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System Loss Model for Body Area Networks in Room Scenarios
PublicationThis paper presents an analysis of system loss in Body Area Networks for room scenarios, based on a wideband measurement campaign at 5.8 GHz. The measurements were performed with a fixed antenna transmitting vertically and horizontally polarised signals, while the user wears dualpolarised antennas. The average system losses in co- and crosspolarised channels are 41.4 and 42.6 dB for vertically polarised transmitted signals and...
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Phase change thermal energy storage – the experience of the materials preparation for the specific applications.
PublicationThermal energy storage and temperature stabilization is very important in many engineering applications. There are three kinds of thermal energy storage: sensible heat, latent heat and reversible chemical reaction heat. Phase change materials (PCM) absorb, store and release large amounts of energy in the form of latent heat, at constant temperature, called the transition temperature. Many innovative applications could be found...
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The Specific Nature of Chemical Composition of Water from Volcanic Lakes Based on Bali Case Study
PublicationThe research area was localized in the Indonesian Archipelago, at the latitude of eight and nine degrees S on the one of the Lesser Sunda group island provinces, Bali (563,3 km2). Two massive calderas (Mount Batur 1717 m above sea level.; Mount Sangiyang 2093 m above sea level) are one of the most prominent landforms in the chain of volcanic mountain ranges of the Bali Island. Lake Batur (17,18 km2) and Batur Spring (which are...
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Distributed Framework for Visual Event Detection in Parking Lot Area
PublicationThe paper presents the framework for automatic detection of various events occurring in a parking lot basing on multiple camera video analysis. The framework is massively distributed, both in the logical and physical sense. It consists of several entities called node stations that use XMPP protocol for internal communication and SRTP protocol with Jingle extension for video streaming. Recognized events include detecting parking...
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Autonomous Vehicle Navigation in Dense Urban Area in Global Positioning Context
PublicationAutonoumous vehicle services are likely to be adopted in dense urban area. Some research prove that autonomous transport might be capable of improving the transport needs of few times and as a consequence sustainability, congestion and safety may be improved. The world, hopefully is close to a transport revolution age. These studies are perhaps exaggerated, over-optimistic and far fro fully operational. The paper takes into account...
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Importance of Specific Heat Characterization when Reporting New Superconductors: An Example of Superconductivity in LiGa2Rh
PublicationWe show that the full-Heusler compound LiGa2Rh is a superconductor with Tc = 2.4 K. The new superconductor was found as a result of an intuition-based extension of a database search for superconductors that looked for the presence of peaks in the electronic band structure near the Fermi energy. The measurement of the entropy loss during the transition from the nonsuperconducting to the superconducting state, a straightforward measurement...
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TDOA versus ATDOA for wide area multilateration system
PublicationThis paper outlines a new method of a location service (LCS) in the asynchronous wireless networks (AWNs) where the nodes (base stations) operate asynchronously in relation to one another. This method, called asynchronous time difference of arrival (ATDOA), enables the calculation of the position of the mobile object (MO) through the measurements taken by a set of non-synchronized fixed nodes and is based on the measurement of...
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PCR-RFLP assays for species-specific identification of fungi belonging to Scopulariopsis and related genera
PublicationFungi of the Scopulariopsis genus, commonly found in the environment, are opportunistic pathogens that can cause various types of human infections. So far, no efficient molecular method has been developed for species differentiation among Scopulariopsis and related genera. In order to advance this field, we have evaluated performance of polymerase chain reaction restriction fragment length polymorphism (PCR-RFLP) assays, based...
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Evaluation of adhesive forces and the specific surface energy of zirconia stabilized by yttria with alumina additions ceramic by AFM method
PublicationThe adhesive forces and the specific surface energy of ceramic material surfaces are very important for further tribological and biomedical applications of ceramics. Partially stabilized zirconia (zirconium oxide) is popular for manufacturing various medical products. ZrO2 stabilized by Y2O3 with additions of 5 wt% alumina was produced by slip casting method with a subsequent sintering. Structure and chemical composition of ceramic...
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Two technologies selected for metropolitan area
PublicationZastosowanie dwóch efektywnych technologii budowlanych, tj. jet grouting i pipe roofing, przedstawiono na przykładzie realizacji budowlanych w obszarze aglomeracji miejskiej. Technika jet grouting znalazła bardzo interesujące zastosowanie przy wykonywaniu szczelnych przesłon przeciwfiltracyjnych, które znacząco ograniczają napływ wody gruntowej do wykopu i umożliwiają przez to swobodne prowadzenie prac fundamentowych. Przedstawiona...
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Environment friendly ships for Baltic area
PublicationPrzedstawiono końcowy efekt projektu europejskiego grupy Eureka E!2772. Scharakteryzowano zagrożenia stwarzane przez żeglugę oraz ekologiczne wymagania stawiane statkom. Przedstawiono plany generalne jednostek.
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The Analysis of Cross-Polarisation Discrimination for Body Area Networks in Cylindrical Metallic Environment
PublicationThe analysis of cross-polarisation discrimination for Body Area Networks in an untypical environment of cylindrical metallic room has been performed in the paper. This analysis was done based on the measurements carried out for dynamic narrowband off-body channels operating at the frequency of 2.45 GHz. The results have shown that there is a strong dependence of the depolarisation effect on the existence of direct component in...
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A Novel Bitrate Adaptation Method for Heterogeneous Wireless Body Area Networks
PublicationIn the article, a novel bitrate adaptation method for data streams allocation in heterogeneous Wireless Body Area Networks (WBANs) is presented. The efficiency of the proposed algorithm was compared with other known algorithms of data stream allocation using computer simulation. A dedicated simulator has been developed using results of measurements in the real environment. The usage of the proposed adaptive data streams allocation...
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A Novel Bitrate Adaptation Method for Heterogeneous Wireless Body Area Networks
PublicationIn the article, a novel bitrate adaptation method for data streams allocation in heterogeneous Wireless Body Area Networks (WBANs) is presented. The efficiency of the proposed algorithm was compared with other known algorithms of data stream allocation using computer simulation. A dedicated simulator has been developed using results of measurements in the real environment. The usage of the proposed adaptive data streams allocation...
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The effect of heat treatment of hardwood on the specific cutting resistance
PublicationW pracy przedstawiono wyniki badań mocy skrawania podczas przecierania modyfikowanego i niemodyfikowanego termicznie drewna dębowego i jesionowego na pilarce ramowej PRW15M. W pierwszym etapie badań, graniakowe próbki drewna dębowego i jesionowego były modyfikowane termicznie za pomocą przegrzanej pary (temperatura 197C, czas 4 h) w parzelni wysokotemperaturowej, w warunkach przemysłowych. Następnie, wyznaczono właściwe powierzchniowe...
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Language specific spectra generated in the human vocal tract
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How Specific Can We Be with k-NN Classifier?
PublicationThis paper discusses the possibility of designing a two stage classifier for large-scale hierarchical and multilabel text classification task, that will be a compromise between two common approaches to this task. First of it is called big-bang, where there is only one classifier that aims to do all the job at once. Top-down approach is the second popular option, in which at each node of categories’ hierarchy, there is a flat classifier...
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Region-Specific Methylation Profiling in Acute Myeloid Leukemia
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Distortion of speech signals in the listening area: its mechanism and measurements
PublicationThe paper deals with a problem of the influence of the number and distribution of loudspeakers in speech reinforcement systems on the quality of publicly addressed voice messages, namely on speech intelligibility in the listening area. Linear superposition of time-shifted broadband waves of a same form and slightly different magnitudes that reach a listener from numerous coherent sources, is accompanied by interference effects...
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Flood Modelling and Risk Analysis of Cinan Feizuo Flood Protection Area, Huaihe River Basin
PublicationThis study evaluated multiple aspects of flood risks and effects on the Cinan Feizuo flood protection area in the Huaihe River basin. Flooding remains a leading problem for infrastructure, especially in urban, residential areas of the region. Effective flood modeling for urbanized floodplains is challenging, but MIKE (ID-2D) is paramount for analyzing and quantifying the risk in the vulnerable region. The Saint-Venant equation...
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Current Status, Barriers and Development Perspectives for Circular Bioeconomy in Polish South Baltic Area
PublicationThe following article presents the current legal situation in Poland as well as in the European Union. Data on biomass production in the Polish South Baltic area were analyzed, along with an indication of the key sectors for the development of bioeconomy. Presentation of the current state of biomass management was made and areas necessary for development were indicated to facilitate the sustainable management of biomass and waste...
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Remote measurement of building usable floor area - Algorithms fusion
PublicationRapid changes that are taking place in the urban environment have significant impact on urban growth. Most cities and urban regions all over the world compete to increase resident and visitor satisfaction. The growing requirements and rapidity of introducing new technologies to all aspects of residents' lives force cities and urban regions to implement "smart cities" concepts in their activities. Real estate is one of the principal...
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Proposal of a System Loss Model for Body Area Network in Passenger Ferry Environment
PublicationIn the paper, proposal of an empirical off-body system loss model for Body Area Networks working in a passenger ferry environment at 2.45 GHz has been presented. The measurements were carried out for dynamic scenarios in the discotheque passenger ferry environment. The general model formula consists of three components: mean system loss, attenuation resulting from the variable antenna position on the human body, and attenuation...
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Relative quantification of pork and beef in meat products using global and species-specific peptide markers for the authentication of meat composition
PublicationWe used global and species-specific peptide markers for a relative quantitative determination of pork and beef in raw and processed meat products made of the two meat species. Four groups of products were prepared (i.e., minced raw meats, sausages, raw and fried burgers) in order to represent products with different extents of food processing. In each group, the products varied in the pork/beef proportions. All products were analysed...
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Optimum number of actuators to minimize the cross-sectional area of prestressable cable and truss structures
PublicationThis paper describes a new computational method for determining the optimum number of actuators to design the optimal and economic cross-sectional area of pin-jointed assemblies based on the conventional force method. The most active members are selected to be prestressed to redistribute stress in the whole structure, resulting in regulating the internal force of bars that face high stress. Reducing stress in critical members allows...
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Study of the Flow Dynamics of Surface Water Masses in the Area of the Coastal Gulf of Gdansk
PublicationThe paper describes two methods of predicting the movement of small objects with surface water masses. One of the methods uses graph theory to describe the motion of water masses in port docks. The results of this study were compared to a simulation using the hydrodynamic numerical model M3D. The results obtained in a virtual environment were related to the experiments in the real world. In the coastal area of the Gulf of Gdansk,...
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MITOGEN-ACTIVATED PROTEIN KINASE 4 impacts leaf development, temperature, and stomatal movement in hybrid aspen
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Bio-fabrication of Zinc Oxide nanoparticles to rescue Mung Bean against Cercospora leaf spot disease
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Deep Learning-Based LOS and NLOS Identification in Wireless Body Area Networks
PublicationIn this article, the usage of deep learning (DL) in ultra-wideband (UWB) Wireless Body Area Networks (WBANs) is presented. The developed approach, using channel impulse response, allows higher efficiency in identifying the direct visibility conditions between nodes in off-body communication with comparison to the methods described in the literature. The effectiveness of the proposed deep feedforward neural network was checked on...
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Phase Change Thermal Energy Storage – The Experience of the Materials Preparation for the Specific Applications.
PublicationThermal energy storage and temperature stabilization is very important in many engineering applications. There are three kinds of thermal energy storage: sensible heat storage, latent heat storage and reversible chemical reaction heat storage. Phase change materials (PCM) absorb, store and release large amounts of energy in the form of latent heat, at constant temperature, called the transition temperature. The amount of heat...
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Evaluation of Body Surface Area Formulae Based on 3D Body Scans
PublicationHuman body surface area (BSA) is an established parameter for the calculation of chemotherapy drugs dosage, treatment of chronic hepatitis B, treatment of burns or for establishing a dosing regimen for antimicrobials. Although being a critical parameter, usage of modern 3D scanners, which would measure the exact BSA value, is often impossible in time-sensitive operations or for patients unable to withstand the scanning process....