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Search results for: PAN-GENOME
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SacNI, an isoschizomer of BanII isolated from streptomyces achromogenes recognizes the 5′-GRGCY/C sequence
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Amplification of erbB-4 oncogene occurs less frequently than that of erbB-2 in primary human breast cancer1Published in conjunction with A Wisconsin Gathering Honoring Waclaw Szybalski on the occasion of his 75th year and 20 years of Editorship-in-Chief of Gene, 10–11 August, 1997, University of Wisconsin, Madison, WI, USA.1
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Molecular cloning and initial characterization of African green monkey (Cercopithecus aethiops) corticotropin releasing factor receptor type 1 (CRF1) from COS-7 cells
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Principles of target DNA cleavage and the role of Mg2+ in the catalysis of CRISPR–Cas9
PublicationAt the core of the CRISPR–Cas9 genome-editing technology, the endonuclease Cas9 introduces site-specific breaks in DNA. However, precise mechanistic information to ameliorate Cas9 function is still missing. Here, multimicrosecond molecular dynamics, free energy and multiscale simulations are combined with solution NMR and DNA cleavage experiments to resolve the catalytic mechanism of target DNA cleavage. We show that the conformation...
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The estimation of regional oil recovery capacity based on marine oil spill response scenario in Vietnam
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Ammonia amendment promotes high rate lactate production and recovery from semi-continuous food waste fermentation
PublicationIn this study, a reliable approach using ammonia nitrogen was proposed to increase lactate production during semi-continuous food waste (FW) fermentation under mesophilic conditions. Both free ammonia nitrogen (FAN) and ammonium ion (NH4+-N) were present in mesophilic reactors, with a wide FAN/NH4+-N ratio variation due to the intermittent pH control. The investigation of responsible mechanisms revealed that the increased production...
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Finite automata for compact representation of tuple dictionaries.
PublicationOpisane zostaje uogólnienie struktury danych - słownika, zwane słownikiem n-tek. Słownik n-tek przedstawia odwzorowanie n-tek łańcuchów znaków na pewne wartości. Motywacją dla powstania tej struktury danych są praktyczne zastosowania w przetwarzaniu języka i mowy, w których obszerne słowniki n-tek używane są do przedstawiania modeli języka. Przedstawiona zostaje technika oszczędnej reprezentacji słowników n-tek. Ta technika...
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Finite automata for compact representation of language models in NLP
PublicationPrzedstawiona zostaje technika reprezentacji modeli języka w przetwarzaniu języka naturalnego wymagająca mało pamięci. Po krótkim omówieniu przyczyn poszukiwania oszczędnej reprezentacji takich modeli języka, pokazane jest, jak automaty skończone mogą być użyte w tym celu. Technika może być postrzegana jako zastosowanie i rozszerzenie doskonałej funkcji mieszającej z wykorzystaniem automatów skończonych. Pierwsze doświadczenia...
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Wyzwania etyczne „teologii dobrobytu” w świetle nauczania papieża Franciszka
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A New Double Digestion Ligation Mediated Suppression PCR Method for Simultaneous Bacteria DNA-Typing and Confirmation of Species: An Acinetobacter sp. Model
PublicationWe have designed a new ddLMS PCR (double digestion Ligation Mediated Suppression PCR) method based on restriction site polymorphism upstream from the specific target sequence for the simultaneous identification and differentiation of bacterial strains. The ddLMS PCR combines a simple PCR used for species or genus identification and the LM PCR strategy for strain differentiation. The bacterial identification is confirmed in the...
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Badania radiograficzne porównawcze złączy spawanych rur według PN-EN 1435oraz dotychczasowych norm polskich. Zesz. Probl. Badania Nieniszczące**2002 nr 7 s. 47-54, 4 rys. 8 tab. bibliogr. 6 poz.
PublicationW pracy przedstawiono cele przeprowadzonych badań. Pierwszym była próba u-stalenia jak w praktyce przedstawiają się wyniki badań związane z ich dok-ładnością, a więc jakością radiogramów. Drugim celem badań było porównaniedokładności badań radiograficznych złączy spawanych rur prowadzonych wedługdotychczasowych norm z wielkościami uzyskanymi przy zastosowaniu normyPN-EN 1435.
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Deep learning techniques for biometric security: A systematic review of presentation attack detection systems
PublicationBiometric technology, including finger vein, fingerprint, iris, and face recognition, is widely used to enhance security in various devices. In the past decade, significant progress has been made in improving biometric sys- tems, thanks to advancements in deep convolutional neural networks (DCNN) and computer vision (CV), along with large-scale training datasets. However, these systems have become targets of various attacks, with...
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Vegetable derived-oil facilitating carbon black migration from waste tire rubbers and its reinforcement effect
PublicationThree dimensional chemically cross-linked polymer networks present a great challenge for recycling and reutilization of waste tire rubber. In this work, the covalently cross-linked networks of ground tire rubber (GTR) were degraded heterogeneously under 150 °C due to the synergistic effects of the soybean oil and controlled oxidation. The degradation mechanism was discussed using Horikx theory and Fourier transformation infrared...
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Quiet Quitting and its Link With Knowledge Risks in Organizations – Theoretical Insights
PublicationPurpose: Quiet quitting has become a widely publicized concept, driven by social media in the United States and other countries in 2022. It is a term used to describe the phenomenon by which employees do the least amount of their work, just enough to meet the requirements of one’s job description (Mahand and Caldwell, 2023). The trend is spreading quickly among young workers. It can potentially harm individuals, job performance,...
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A new division of bacterial UvrA homologues
PublicationThe UvrA protein is a DNA-binding and damage-recognition enzyme which participates in the prokaryotic type nucleotide excision repair (NER) pathway. It has recently been noted that some bacterial genomes comprise additional uvrA genes which encode five distinct types of UvrA homologue. We investigated the sequences of over 2400 bacterial genomes and found 130 examples of bacteria containing uvrA 2 genes. The sequence analyses conducted...
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Ligation Mediated PCR methods, their possibilities and limitations
PublicationThe application of molecular diagnostics for bacterial strain typing or identifying bacteria at the strain level is of particular importance at present. However, among the many genotyping methods that are currently available, no single one is universally ideal. In this article, we thus review the Ligation Mediated PCR group methods as prospects from which to choose. We discuss different strategies for selecting the amplified PCR...
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New Approaches for Escherichia coli Genotyping
PublicationEasy-to-perform, fast, and inexpensive methods of differentiation of Escherichia coli strains beyond the species level are highly required. Herein two new, original tools for genotyping of E. coli isolates are proposed. The first of the developed method, a PCR-RFLP (polymerase chain reaction-restriction fragment length polymorphism) test uses a highly variable fliC gene, encoding the H antigen as a molecular target. The designing...
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The role of epigenetics in regeneration
PublicationComplex changes in chromatin structure and at the transcriptional level occur from the creation of a single parental gamete throughout fertilization, embryo development and the life of an adult organism. Epigenetic changes, such as methylation and hydroxymethylation of DNA or histone methylation and acetylation, are an important part of these processes. Epigenetic regulation has an essential influence on gene expression level. DNA...
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Analysis of the bulk solid flow during gravitational silo emptying using X-ray and ECT tomography
PublicationW pracy przedstawiono wyniki pomiarów zmian koncentracji piasku bezkohezyjnego zachodzących w prostokątnym modelu silosu opróżnianym grawitacyjnie. Pomiary wykonano z zastosowaniem kontynualnego promieniowania rentgenowskiego oraz z użyciem tomografii pojemnościowej. Badania wykonano dla zróżnicowanego zagęszczenia początkowego piasku oraz różnego stopnia szorstkości ścian. Szczególny nacisk położono na zachowanie sie materiału...
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Security Evaluation of IT Systems Underlying Critical Networked Infrastructures
PublicationCritical infrastructures have become highly dependent on information and communication technology (ICT). The drawback of this situation is that the consequences of disturbances of the underlying ICT networks may be serious as cascading effects can occur. This raises a high demand for security assurance, with a high importance assigned to security evaluations. In this paper we present an experiment-centric approach for the characterisation...
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Intelligent monitoring the vertical dynamics of wheeled inspection vehicles
PublicationThe problem of intelligent monitoring of the vertical dynamics of wheeled inspection vehicles is addressed. With the independent MacPherson suspension system installed, the basic analysis focuses on the evaluation of the parameters of the so-called quarter car model. To identify a physically motivated continuous description, in practice, dedicated integral-horizontal filters are used. The obtained discrete model, which retains...
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Fungal Typin Methods
PublicationThe broad application of the molecular techniques in mycoses diagnosis is related to increase of infections caused by fungi in many countries. The oldest typing methods relaying on fenotypic observation, physiological and biochemical examination have had very limited importance from decades. Novadays, the molecular biology methods took their place. Most of the genotyping methods have been devoleped to be applied for typing of bacteria...
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Towards Cancer Patients Classification Using Liquid Biopsy
PublicationLiquid biopsy is a useful, minimally invasive diagnostic and monitoring tool for cancer disease. Yet, developing accurate methods, given the potentially large number of input features, and usually small datasets size remains very challenging. Recently, a novel feature parameterization based on the RNA-sequenced platelet data which uses the biological knowledge from the Kyoto Encyclopedia of Genes and Genomes, combined with a classifier...
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Low Frequency Electromagnetic Interferences Impact on Transport Security Systems Used in Wide Transport Areas
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Nadzór naukowy związany z realizacja zadania inwestycyjnego pn. ,, Budowa linii tramwajowej wraz z infrastrukturą towarzyszącą w ulicy Nowej Bulońskiej Północnej w Gdańsku w ramach Gdańskiego Projektu Komunikacji Miejskiej - etap IVA". Audyt otwarcia
PublicationCelem opracowania jest weryfikacja projektu wykonawczego obiektów mostowych zaprojektowanych w ramach zadania inwestycyjnego pn. ,,Budowa linii tramwajowej wraz z infrastrukturą towarzyszącą w ulicy Nowej Bulońskiej Północnej w Gdańsku w ramach Gdańskiego Projektu Komunikacji Miejskiej - etap IVA" (audyt otwarcia). Zakres opracowania obejmuje: • ogólny przegląd dokumentacji, • analizę statyczno–wytrzymałościową mostu, • analizę...
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Influence of Thermal Imagery Resolution on Accuracy of Deep Learning based Face Recognition
PublicationHuman-system interactions frequently require a retrieval of the key context information about the user and the environment. Image processing techniques have been widely applied in this area, providing details about recognized objects, people and actions. Considering remote diagnostics solutions, e.g. non-contact vital signs estimation and smart home monitoring systems that utilize person’s identity, security is a very important factor....
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Cooperative response to marine hazardous and noxious substances and oil spill incidents in the ASEAN region
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Selection of energy storage units by genetic algorithm for mitigating voltage deviations
PublicationIn recent years, energy storage units have become very popular. They are applied both for economic and technical purposes. Unfortunately, the cost of such devices is still high and selecting their proper location and rated power have to be performed precisely. In this paper, a Genetic-Algorithm-based optimization method for selecting the best configuration of energy storage units in the power network is proposed. The presented...
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Quiet Quitting and its Link With Knowledge Risks in Organizations – Theoretical Insights
PublicationPurpose: Quiet quitting has become a widely publicized concept, driven by social mediain the United States and other countries in 2022. It is a term used to describe thephenomenon by which employees do the least amount of their work, just enough tomeet the requirements of one’s job description (Mahand and Caldwell, 2023). The trendis spreading quickly among young workers. It can potentially harm individuals,...
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MEDIA ARCHITECTURE AND INTERACTIVE ART INSTALLATIONS STIMULATING HUMAN INVOLVEMENT AND ACTIVITIES IN PUBLIC SPACES
PublicationThis paper examines the potential for media architecture and interactive art installations to stimulate human involvement and activities in public spaces. On the basis of theoretical approaches, case studies and interdisciplinary surveys, the paper provides insight into how screens projecting media and interactive installations in city spaces can inspire people to become active on many levels. The research is focused, both on temporary...
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Quality of Satellite Communication in Selected Mobile Android Smartphones
PublicationToday, thanks to mobile devices, satellite communication is available to anyone and everywhere. Gaining information on one’s position using GNSS (Global Navigation Satellite Systems), particularly in unknown urban environments, had become an everyday activity. With the widespread of mobile devices, particularly smartphones, each person can obtain information considering his or her location anytime and everywhere. This paper is...
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Recovery of silver metallization from damaged silicon cells
PublicationMetallization is one of the key process steps to fabricate solar cells with high performance in a cost-effective way. Majority of photovoltaic solar cell manufacturing uses thick film screen print metallization with Ag containing paste to produce solar cells. The average lifetime of PV modules can be expected to be more than 25 years. The disposal of PV systems will become a problem in view of the continually increasing production...
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Novel Tools for Comprehensive Functional Analysis of LDLR (Low-Density Lipoprotein Receptor) Variants
PublicationFamilial hypercholesterolemia (FH) is an autosomal-dominant disorder caused mainly by substitutions in the low-density lipoprotein receptor (LDLR) gene, leading to an increased risk of premature cardiovascular diseases. Tremendous advances in sequencing techniques have resulted in the discovery of more than 3000 variants of the LDLR gene, but not all of them are clinically relevant. Therefore, functional studies of selected variants...
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Reactions of solute species at an electrode modified with titanocene functionalized polypyrrole film: ferrocene and titanocene dichloride
PublicationPo raz pierwszy zbadano możliwość intermediacji ładunku poprzez centra tytanocenowe polimeru modyfikowanego chemicznie związanymi grupami dichloro tytanocenowymido polipirolu. Badano reakcje elektrodowe ferrocenu i dichlorotytanocenu. Wykazano aktywność elektrodową w zakresie potencjałów redoks pary Ti(IV/TiIII)w stosunku do reakcji redoks ferrocenu i reakcji dichlorotytanocenu. Wykazano, że centra TcCl2 polimeru są zadowalająco...
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SHAPING PLACES THROUGH ART. THE ROLE OF CREATIVE PLACEMAKING IN PHILADELPHIA
PublicationThe aim of a paper is to examine the role of creative placemaking in shaping urban environment. Art and artists have a long history of contributing and changing cities. Nowadays art and cultural activities become the revitalization tools, helping to start and sustain the process of change in the areas in crisis. The process of creative placemaking brings art to people and people to art, enhancing creativity in lives to transform...
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HYDRODYNAMIC THRUST BEARINGS WITH POLYMER LINING
PublicationPolymeric linings of sliding surfaces of the hydrodynamic bearings have been used successfully for over 50 years. Despite of their long history of operation and research, they have not become wide spread in industrial applications. This fact may be surprising, considering th e conclusions that have been published concerning bearing operation and design. This paper summarizes the current...
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Study on population dynamics for triple-linked food chain using a simulation-based approach
PublicationThe procedures based on simulation have become a feasible testing method that does not require investing valuable resources to create a concrete prototype, especially with the increasing computational power of computers. Thus, design changes can be adopted and design errors can be fixed before it is too late. Simulation turns to be a cheap, safe and often more acceptable from an ethical perspective. In our work we summarize the...
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Next Generation Digital
PublicationThe paper outlines the major objectives of the MENAID research project, eimed at novel architectures of digital documents. Such documents will enable reduction of information overflow and strain, a major threat to the growth of a digital society. They will be forward compatible, technology neutral and lightweight, allowing workers of network organizations to use personal devices of any type.
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Establishing the allosteric mechanism in CRISPR‐Cas9
PublicationAllostery is a fundamental property of proteins, which regulates biochemical information transfer between spatially distant sites. Here, we report on the critical role of molecular dynamics (MD) simulations in discovering the mechanism of allosteric communication within CRISPR‐Cas9, a leading genome editing machinery with enormous promises for medicine and biotechnology. MD revealed how allostery intervenes during at least three...
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TNF‐α polymorphisms affect persistence and progression of HBV infection
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Green Chromatography: State-of-the-art, Opportunities and Future Perspectives
PublicationIt is well known that chromatographic procedures could have a significant impact on the environment if laboratory practice is not in line with the principles of green analytical chemistry (GAC). However, chromatographic techniques have the potential to be greener in all steps of the analysis. The approaches used to make chromatographic separations greener differ depending on the type of chromatographic method. This chapter considers...
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Knowledge risks inherent in business sustainability
PublicationSince the connection between business sustainability and knowledge risks has not been established in the literature so far, this paper provides a conceptual framework to demonstrate the possible impact of various knowledge risks on business sustainability and offers potential ways to manage and overcome these risks. The aim of this conceptual paper is to address two main questions: What are the potential effects of knowledge risks...
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Molecular Dynamics to Predict Cryo-EM: Capturing Transitions and Short-Lived Conformational States of Biomolecules
PublicationSingle-particle cryogenic electron microscopy (cryo-EM) has revolutionized the field of the structural biology, providing an access to the atomic resolution structures of large biomolecular complexes in their near-native environment. Today’s cryo-EM maps can frequently reach the atomic-level resolution, while often containing a range of resolutions, with conformationally variable regions obtained at 6 Å or worse. Low resolution...
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Deep Learning-Based Intrusion System for Vehicular Ad Hoc Networks
PublicationThe increasing use of the Internet with vehicles has made travel more convenient. However, hackers can attack intelligent vehicles through various technical loopholes, resulting in a range of security issues. Due to these security issues, the safety protection technology of the in-vehicle system has become a focus of research. Using the advanced autoencoder network and recurrent neural network in deep learning, we investigated...
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Analytical aspects of model compounds toxicity assessment using MTT and Microtox bioanalytica assays
PublicationMore and more increased intensity of anthropopressure processes can be observed, among other things, in the release of great quantities of synthetic substances into the environment, including the Endocrine Disrupting Compounds. The effects of the above-mentioned human impact on the environment not only can be noticed in the homeostasis disturbance in ecosystems, but they are also visible with respect to human. The high incidence...
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Temperature Sensors Based on Polymer Fiber Optic Interferometer
PublicationTemperature measurements are of great importance in many fields of human activities, including industry, technology, and science. For example, obtaining a certain temperature value or a sudden change in it can be the primary control marker of a chemical process. Fiber optic sensors have remarkable properties giving a broad range of applications. They enable continuous real-time temperature control in difficult-to-reach areas, in...
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Tome-lapse X-ray tomography imaging of flow patterns in versatile silo model
PublicationThe paper introduces a new versatile silo model that was especially designed for in situ X-ray tomography studies of silo discharge for various flow conditions, namely concentric and eccentric. The presented work focuses on organic granular materials where low fraction of short-grain white rice is mixed with spheroidal sorghum particles. The high-quality tomography images combined with adequate image processing strategy allows...
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Wspólnota mieszkańców - passé?
PublicationLocal community - a term associated with the notion of neighbourhood and the quality of living environment - do not seem attractive to architects in Poland nowadays. Following years of collectivism enforced by top-down political decisions, one can currently observe bottom-up movements - attempts of building local communities. This paper presents research of chosen case studies (both Polish and foreign) illustrating the above approach....
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Speace frienly for the blind = Przestrzeń przyjazna dla niewidomych
PublicationThe article presents issues connected with accessibility of public space for people with eyesight disabilities. The use of the extravisual spatial stimuli in shaping the urban environment has been analysed. Spaces in which musltisensory spatial reception is feasible become user-friendly, as they come to meet the changing needs of their users. The article introduces a system of textures aiding spatial orientation, navigation and...
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Services Marketing Influence On Marketing Theory Evolution,
PublicationThe discovery of differences between tangible goods and services in the 1970s was one of the most landmark moments in the history of marketing with an emphasis being shifted to the need for using different/diversified marketing activities while dealing with various industries and types of products. The objective of this article is to briefly characterise the evolution of the marketing thought and to present the crucial influence...