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Two highly thermostable paralogous single-stranded DNA-binding proteins from Thermoanaerobacter tengcongensis
PublicationThe thermophilic bacterium Thermoanaerobacter tengcongensis has two single-stranded DNA-binding (SSB) proteins, designated TteSSB2 and TteSSB3. In a SSB complementation assay in Escherichia coli, only TteSSB3 took over the in vivo function of EcoSSB. We have cloned the ssb genes obtained by PCR and have developed E. coli overexpression systems. The TteSSB2 and TteSSB3 consist of 153 and 150 amino acids with a calculated molecular...
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Experimental and theoretical investigation of conformational states and noncovalent interactions in crystalline sulfonamides with a methoxyphenyl moiety
PublicationFour sulfonamide derivatives with a methoxyphenyl moiety, namely N-{4-[(2-methoxyphenyl)sulfamoyl] phenyl}acetamide (1a), N-{4-[(3-methoxyphenyl)sulfamoyl]phenyl}acetamide (1b), 4-amino-N-(2- methoxyphenyl)benzenesulfonamide (2a) and 4-amino-N-(3-methoxyphenyl)benzenesulfonamide (2b), have been synthesized and characterized physiochemically by CHNS, MS, FT-IR, 1H NMR, 13C NMR, PXRD and TG methods. Crystal structures were determined...
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Sensitive determination of isoprostanes in exhaled breath condensate samples with use of liquid chromatography-tandem mass spectrometry
PublicationOxidative stress is the hallmark of various inflammatory lung diseases. Increased concentrations of reactive oxygen species in the lungs are reflected by elevated concentrations of oxidative stress markers in the breath, airways, lung tissue and blood. The aim of this work was to develop a method for the fast measurement of F2 isoprostanes in exhaled breath condensate (EBC) samples using equipment which is nowadays available and...
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Determination of flavanols by liquid chromatography with fluorescence detection. Application to the characterization of cranberry-based pharmaceuticals through profiling and fingerprinting approaches
PublicationIn this work, a new method based on reversed-phase high-performance liquid chromatography (HPLC) with fluorescence detection (FLD) was established for the determination of catechins and related oligomeric proanthocyanidins (PACs) in cranberry-based pharmaceuticals. Compounds were recovered by liquid extraction using methanol/water/hydrochloric acid (60:39:1, v:v:v) as the extraction solvent. The chromatographic separation was carried...
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Characterization of single-stranded DNA-binding proteins from the psychrophilic bacteria
PublicationSingle-stranded DNA-binding proteins (SSBs) are indispensable elements in the cells of all living organisms. SSB proteins interact with ssDNAinsequence in an independent manner, preventing them from forming secondary structures and from degradation by nucleases. In this way, SSB-binding proteins participate in all processes involving ssDNA, such as replication, repair and recombination.Although there are differences in amino acid...
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Characterization of single-stranded DNA-binding proteins from the psychrophilic bacteria
PublicationSingle-stranded DNA-binding proteins (SSBs) are indispensable elements in the cells of all living organisms. SSB proteins interact with ssDNA insequence in an independent manner, preventing them from forming secondary structures and from degradation by nucleases. In this way, SSB-binding proteins participate in all processes involving ssDNA, such as replication, repair and recombination. Although there are differences in amino...
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A new design of the poded azimuth thruster for a diesel-hydraulic propulsion system of a small vessel
PublicationW artykule przedstawiono analizę różnych rodzajów okrętowych systemów napędowych z pędnikami azymutalnymi oraz rozwiązanie konstrukcyjne pędnika przeznaczonego dla małego statku z napędem diesel-hydraulicznym.Cechą charakterystyczna tego rozwiązania jest umieszczenie pod wodą głównego hydraulicznego silnika, napedzającego śrubę o skoku stałym mieszczoną w dyszy. Silnik zamocowany do gondoli połączonej sztywno z pionowową kolumną...
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Piotr Dominiak prof. dr hab.
PeopleHe was born in Radom on June 29, 1948. He graduated in Economy at the University of Warsaw (1971), where he also obtained his doctorate (1976) and his habilitation (1989). He received the title of Professor in 2005. He has been working at GUT since 1971. Between 1991 and1993 he was a director of the Institute of Economic Sciences and Humanities at GUT. He was the Dean of the Faculty of Management and Economics in the years 1993-1999...
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Displacements of bones during bending test of first metatarsophalangeal joint after arthrodesis with medially or dorsally positioned locking plate and lag screw.
Open Research DataThe Dataset contains the values of displacements of bone control points during the bending test of first metatarsophalangeal (MTP1) joint specimens after arthrodesis.
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Opracowanie wyników pomiaru przemieszczeń pionowych i odchyleń od pionu słupów w halach "Mostostalu Gdańsk S.A." przy ulicy Marynarki Polskiej 96 w Gdańsku
PublicationPomiary okresowe osiadania i wychylenia słupów hali o konstrukcji szkieletowej
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Maciej Matciak doktor
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Badania nad doborem najkorzystniejszego składu eluentu do rozdzielenia metabolitów wtórnych z grupy naftochinonów i flawonoidów z zastosowaniem chromatografii planarnej w normalnym i odwróconym układzie faz = A research on the composition of the eluent for separation of plant metabolities by reversed phase planar chromatography
PublicationIn the paper the results of separation of plant extracts by RP-TLC with different composition of the eluents are presented. Analysis of retention data allowed to select components of the eluent with favorable retention parameters, which can be used in the future for separation of this type of plant extracts by column liquid chromatography techniques.
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Diaquadihydroxohexakis(tri-tert-butoxysilanethiolato)octalithium(I)-toluene(1/2). Acta Cryst. Sect. E Struct. Rep. [online]**2002 vol. 58 s. m569-m570 1 rys. 1 tab. bibliogr. 9 poz. Diakwadihydroksoheksakis (tri - tert-butoksysilanotiolano)oktalit(I)-toluen (1/2).
PublicationPraca zawiera opis syntezy i struktury krystalicznej oraz cząsteczkowej ty-tułowego związku. Prezentowana struktura zawiera cząsteczki będące formalnieadduktem o wzorze Li8(SR)6(OH)2(H2O)2 (R=(tBuO)3Si) oraz cząsteczki toluenu.Strukturę wyznaczono stosując rentgenowską analizę strukturalną monokryszta-łu.
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Monitorowanie i mapowanie zanieczyszczenia powietrza atmosferycznego przez związki z grupy BTEX (benzen, toluen, etylobenzen, ksylen) z wykorzystaniem techniki dozymetrii pasywnej do pobierania próbek analitów = Monitoring and mapping of atmospheric pollutans with the use of passive technique of sampling of BTEX (benzene, ethylbenzene, toluene, xylenes) analytes
PublicationWskutek działalności człowieka do atmosfery dostaje się coraz większa liczba substancji szkodliwych, uznanych za potencjalnie niebezpieczne dla organizmów żywych, głównie z uwagi na ich toksyczność. Do takich substancji zalicza się między innymi związki z grupy BTEX. Chcąc ocenić stopień narażenia populacji na obecność w powietrzu atmosferycznym analitów z grupy BTEX, niezbędne jest monitorowanie poziomu stężeń tych zanieczyszczeń...
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Application of dynamic headspace and gas chromatography coupled to mass spectrometry (DHS-GC-MS) for the determination of oxygenated volatile organic compounds in refinery effluents
PublicationThe paper presents a new procedure for the determination of oxygenated volatile organic compounds (O-VOCs) in postoxidative effluents from the production of petroleum asphalt using dynamic headspace coupled to gas chromatography-mass spectrometry in the selected ion monitoring (SIM) mode (DHSGC-MS). Among the GC capillary columns tested, a polar SLB-IL111 column with the ionic liquid stationary phase was found to be superior due...
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A new Toxoplasma gondii chimeric antigen containing fragments of SAG2, GRA1, and ROP1 proteins—impact of immunodominant sequences size on its diagnostic usefulness
PublicationThis study presents the first evaluation of new Toxoplasma gondii recombinant chimeric antigens containing three immunodominant regions of SAG2, GRA1, and one of two ROP1 fragments differing in length for the serodiagnosis of human toxoplasmosis. The recombinant chimeric antigens SAG2-GRA1-ROP1L (with large fragment of ROP1, 85-396 amino acid residues) and SAG2-GRA1-ROP1S (with a small fragment of ROP1, 85-250 amino acid residues)...
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A new B-D-galactosidase with a low temperature optimum isolated from the Antarctic Arthrobacter sp. 20B: gene cloning, purification and characterization.
PublicationA psychrotrophic bacterium producing a coldadaptedB-galactosidase upon growth at low temperatureswas classiWed as Arthrobacter sp. 20B. A genomic DNAlibrary of strain 20B introduced into Escherichia coliTOP10F' and screening on X-Gal (5-bromo-4-chloro-3-indolyl-B-D-galactopyranoside)-containing agar plates ledto the isolation of B-galactosidase gene. The B-galactosidasegene (bgaS) encoding a protein of 1,053 amino acids,with a...
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Novel single-stranded DNA-binding protein from psyvhrophilic bacterium Psychrobacter arcticus
PublicationTo study the biochemical properties of SSB from Psychrobacter arcticus (ParSSB), we have cloned the ssb genes obtained by PCR and have developed Escherichia coli overexpression systems. The gene consists of an open reading frame of 642 nucleotides encoding SSB protein of 213 amino acids with a calculated molecular mass of 22.8 kDa. The amino-acid sequence of ParSSB exhibits 49% identity and 57% similarity to Escherichia coli SSB....
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A highly thermostable, homodimeric single-stranded DNA-binding protein from Deinococcus radiopugnans
PublicationWe report the identification and characterization of the single-stranded DNA-binding protein (SSB) from the mesophile and highly radiation-resistant Deinococcus radiopugnans (DrpSSB). PCR-derived DNA fragment containing the complete structural gene for DrpSSB protein was cloned and expressed in Escherichia coli. The gene consisting of an open reading frame of 900 nucleotides encodes a protein of 300 amino acids with a calculated...
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Molecular basis of essentiality of early critical steps in the lipopolysaccharide biogenesis in Escherichia coli K-12: requirement of MsbA, cardiolipin, LpxL, LpxM and GcvB
PublicationTo identify the physiological factors that limit the growth of Escherichia coli K-12 strains synthesizing minimal lipopolysaccharide (LPS), we describe the first construction of strains devoid of the entire waa locus and concomitantly lacking all three acyltransferases (LpxL/LpxM/LpxP), synthesizing minimal lipid IVA derivatives with a restricted ability to grow at around 21 °C. Suppressors restoring growth up to 37 °C of Δ(gmhD-waaA)...
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The Substantial Improvement of Amphotericin B Selective Toxicity Upon Modification of Mycosamine with Bulky Substituents
PublicationAbstract: Background: It is assumed that the unfavorable selective toxicity of an antifungal drug Amphotericin B (AmB) can be improved upon chemical modification of the antibiotic molecule. Objective: The aim of this study was verification of the hypothesis that introduction of bulky substituents at the amino sugar moiety of the antibiotic may result in diminishment of mammalian vitro toxicity of thus prepared AmB derivatives. Methods:...
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The spontaneous electron emission and rotational predissociation lifetimes of the diatomic silver anion
Open Research DataThe process of a two-channel decay of the diatomic silver anion (Ag2-), namely the spontaneous electron ejection giving Ag2 + e- and the dissociation leading to Ag- + Ag is theoretically studied. The ground state potential energy curves (PECs) of the neutral silver dimer and anionic silver diatomic molecule are calculated using the single reference...
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Enhanced removal of hexavalent chromium from aqueous media using a highly stable and magnetically separable rosin-biochar-coated TiO2@C nanocomposite
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Opracowanie wyników pomiaru przemieszczeń pionowych i odchyleń od pionu słupów nr C'3 i E'3 w hali obiektu 2 "Mostostalu Gdańsk S.A." przy ulicy Marynarki Polskiej 96 w Gdańsku
PublicationPomiary geodezyjne osiadania i wychylenia wybranych słupów wywołane 10krotnym najazdem suwnicy.
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Structural analogues of reactive intermediates as inhibitors of glucosamine-6-phosphate synthase and phosphoglucose isomerase
PublicationCentra aktywne izomerazy fosfoglukozowej (PGI) oraz domeny izomerazowej (HPI) syntazy glukozamino-6-fosforanu (GlcN-6-P), wykazują podobieństwo ułożenia przestrzennego kluczowych reszt aminokwasowych, z wyjątkiem reszty Arg272 PGI i reszt Lys603 i Lys485 HPI. Dziesięć pochodnych D-heksitolo-6-P, kwasu 5-fosfoarabonowego i kwasu 6-fosfoglukonowego, strukturalnych analogów cis-enolaminy lub cis-enolanu, przypuszczalnych stanów przejściowych...
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KOL-POL Projektowanie bezpośrednie kolumn CMC na podstawie badań polowych
ProjectsProject realized in Department of Geotechnics, Geology and Marine Civil Engineering according to PBS3/B2/18/2015 agreement from 2015-12-14
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On the Characteristic Graph of a Discrete Symmetric Channel
PublicationWe present some characterizations of characteristic graphs of row and/or column symmetric channels. We also give a polynomial-time algorithm that decides whether there exists a discrete symmetric channel whose characteristic graph is equal to a given input graph. In addition, we show several applications of our results.
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A comparative study of the molecular lipophilicity indices of vitamins A and E, and of some precursors of vitamin A, estimated by HPLC and by different computation methods
PublicationIndeksy lipofilowości witamin A i E oraz wybranych prekursorów witaminy A zostały obliczone na podstawie wyników badań z wykorzystaniem wysokosprawnej chromatografii cieczowej z odwróconym układem faz (RPHPLC) i kolumn chromatograficznych typu C-8 i C-18.Uzyskano doskonałe współczynniki korelacji (>0,9999) dla wyników uzyskanych dla tych dwóch typów kolumn chromatograficznych.
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Functionalized azobenzocrown ethers as sensor materials—The synthesis and ion binding properties
PublicationNew 13- and 16-membered azobenzocrown ethers with aromatic amino, amide, ether–ester or ether–amide residue in para position to an azo moiety were obtained. Acid–base properties and ion binding ability of the colored compounds were studied by spectroscopic methods: UV–vis, fluorimetry and 1H NMR spectroscopy. Selected azobenzocrowns were tested as ionophores in ion-selective membrane electrodes (ISEs) – classic and miniature all...
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Selected organophosphorus compounds with biological activity. Applications in medicine
PublicationThe purpose of this article is to provide an overview of the latest applications of organophosphorus compounds (OPs) that exhibit biological activity. A large family of OPs have become popular in recent years. The practical application of OPs in modern medicine has been attributed to their unique properties. In this article, the methods used to select these compounds will be emphasized. This paper will first outline the findings...
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Convenient Synthesis of Functionalized Unsymmetrical Vinyl Disulfides and Their Inverse Electron-Demand Hetero-Diels-Alder Reaction
PublicationThe simple, convenient, and efficient methods for the preparation of unsymmetrical vinyl disulfides with additional functional groups under mild conditions with moderate to high yields were designed. The developed methods include the reaction of S-vinyl phosphorodithioate with thiotosylates or S-vinyl thiotosylate with thiols. The designed methods allow for the synthesis of unsymmetrical vinyl disulfides with additional functionalities...
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“Dilute & Shoot” approach for rapid determination of trace amounts of nicotine in zero-level e-liquids by reversed phase liquid chromatography and hydrophilic interactions liquid chromatography coupled with tandem mass spectrometry-electrospray ionization
PublicationTwo analytical procedures are proposed where HILIC and RPLC techniques are coupled with tandem mass spectrometry detection for rapid determination of trace amounts of nicotine in zero-level liquids for electronic cigarettes. Samples are prepared on the basis of the approach “dilute & shoot” which makes this important step quick and not complicated. The chromatographic separation was carried out on a Zorbax XDB column (RPLC method)...
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2,2,6,6-Tetramethylpiperidinium pentachlorobenzenethiolate
PublicationMetodą rentgenowskiej analizy strukturalnej wyznaczono strukturę krystaliczną i cząsteczkową tytułowego związku. Charakterystycznym motywem struktury determinowanej przez wiązania wodorowe N-H...S, jest izolowany dimer (silanotiol-amina)2.
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Mechanism of the Reaction of Amines with 5-[(Aryl- or Alkylamino)hydroxymethylene]-2,2-dimethyl-1,3-dioxane-4,6-diones in the Presence of Chlorotrimethylsilane (Me3SiCl);
PublicationAddition of chlorotrimethylsilane (Me3SiCl) to the mixture of a carbamoyl‐substituted Meldrum's acid, i.e., a 5‐[(arylamino)hydroxymethylene]‐2,2‐dimethyl‐1,3‐dioxane‐4,6‐dione of type 1 and a secondary amine as nucleophile strongly accelerated the rate of their reaction. The reason for this phenomenon observed, during our previous research, remained, however, unclear. To elucidate the mechanism of this reaction, we assumed and...
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Sounding rocket temperature and heat transfer data
Open Research DataThis dataset contains temperature and heat transfer data measured during REXUS 25 sounding rocket HEDGEHOG Experiment launched from Esrange Space Centre, Kiruna, Sweden. For experiment details, please see:
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Analiza porównawcza metod zwiększania nośności i sztywności stalowych, doczołowych węzłów śrubowych.
PublicationInnowacyjna, w porównaniu z dotychczas stosowanym sposobem, metoda obliczania nośności stalowych węzłów została wdrożona wraz z normami europejskimi. Pozwala ona dokładniej odwzo-rować rzeczywistą pracę poszczególnych części węzła, gdyż wynik obliczeń uzależniony jest od znacznie większej liczby zmiennych. Dzięki postępowi technologicznemu w zakresie metalurgii oraz badaniom naukowym obecnie możliwe jest wzmacnianie połączeń...
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Enhanced cellulose extraction from agave plant (Agave americana Species) for synthesis of magnetic/cellulose nanocomposite for defluoridation of water
PublicationResearch on fluoride removal from water is currently focusing on the development of innovative materials for defluoridation water. The current study extracted and used enhanced cellulose from Agave americana species to synthesize a magnetic/cellulose nanocomposite for water defluoridation. Strong and light binary acids (H2SO4 and CH3COOH) were utilized to pretreat raw material to enhance cellulose extraction. Central composite...
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Curing behavior of epoxy/Fe 3 O 4 nanocomposites: A comparison between the effects of bare Fe 3 O 4 , Fe 3 O 4 /SiO 2 /chitosan and Fe 3 O 4 /SiO 2 /chitosan/imide/phenylalanine-modified nanofillers
PublicationIn this study, Fe3O4 magnetic nanoparticles (MNPs) were synthesized (B-MNP) and then modified with SiO2 to form Fe3O4/SiO2 core/shell MNPs. The Fe3O4/SiO2 MNPs were chemically functionalized with chitosan so as to gain Fe3O4/SiO2/Chitosan (CH-MNP). The CH-MNP was functionalized with a macromolecule containing imide and phenylalanine precursors to gain Fe3O4/SiO2/Chitosan/imide/phenylalanine based MNPs (CH-IM-MNP). The differences...
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Tensile test results of fused filamend fabricated polylactyde and polylactyde with carbon fiber filler
Open Research DataThe Dataset contains the results of the mechanical behaviour of dog-bone shaped specimens. The specimens were additively manufactured with the fused filament fabrication (FFF) method. They used two different materials polylactide (PURE PLA) and polylactide with carbon fibre filler (PLA+CF). The specimens were segregated into three groups - unsterilized,...
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Kontrola procesu wytwarzania biowodoru z gliceryny podczas fermentacji beztlenowej
PublicationProdukcja wodoru z biomasy z wykorzystaniem procesów biologicznych jest korzystną ekonomicznie alternatywą w porównaniu do otrzymywania wodoru np. na drodze zgazowania, pirolizy, czy przez rozkład biomasy w warunkach nadkrytycznych. Wśród biologicznych procesów otrzymywania wodoru, za najbardziej obiecującą uważa się ciemną fermentację wodorową, w której substraty organiczne są przekształcane bez udziału światła przez bakterie...
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Green products from herbal medicine wastes by subcritical water treatment
PublicationHerbal medicine wastes (HMWs) are byproducts of medicine factories, which are mainly landfilled for their environmental problems. Only bearing in mind the contamination and concerns caused by the COVID-19 pandemic and environmental emissions, the worth of herbal medicine wastes management and conversion to green products can be understood. In this work, subcritical water treatment was carried out batch-wise in a stainless tube...
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Characterization of exceptionally thermostable single-stranded DNA-binding proteins from Thermotoga maritima and Thermotoga neapolitana
PublicationBACKGROUND: In recent years, there has been an increasing interest in SSBs because they find numerous applications in diverse molecular biology and analytical methods.RESULTS: We report the characterization of single-stranded DNA binding proteins (SSBs) from the thermophilic bacteria Thermotoga maritima (TmaSSB) and Thermotoga neapolitana (TneSSB). They are the smallest known bacterial SSB proteins, consisting of 141 and 142 amino...
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Structural and spectroscopic analysis of a new family of monomeric diphosphinoboranes
PublicationWe present a series of amino- and aryl(diphosphino)boranes R2PB(R’’)PR’2, where R2P, R’2P = tBu2P, tBuPhP, Ph2P, Cy2P, and R’’ = iPr2N, Ph, which were obtained via the metathesis reaction of iPr2NBBr2 or PhBBr2 with selected lithium phosphides. The structures of isolated diphosphinoboranes were characterized in the solid state and in solution by means of X-ray diffraction and NMR spectroscopy, respectively. The utility of these...
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Cloning, expression, and biochemical characterization of a coldactive GDSL-esterase of a Pseudomonas sp. S9 isolated from Spitsbergen island soil
PublicationAn estS9 gene, encoding an esterase of the psychrotolerant bacterium Pseudomonas sp. S9 was cloned and sequenced. The deduced sequence revealed a protein of 636 amino acid residues with a molecular mass of 69 kDa.Further amino acid sequence analysis revealed that the EstS9 enzyme contained a G-D-S-L motif centered at a catalytic serine, an N-terminal catalytic domain and a C-terminal autotransporter domain. Two recombinant E. coli...
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Antimicrobial Effect of Essential Oil of Ziziphora tenuior on Water by Heterotrophic Plate Counts Method in Kerman (Southeast of Iran)
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Wzmocnienie podłoża gruntowego metodą dynamicznej wymiany (DR) dla posadowienia obiektów terminalu kontenerowego
PublicationPrzekazywanie odciążeń na bardzo rozległych powierzchniach w przypadku zalegania gruntów słabych o znacznych odkształceniach wymaga ich ulepszenia i poprawy ich cech mechanicznych. Jedną z metod, która spełnia powyższe warunki jest metoda dynamicznej wymiany oraz wzmacnianie podłoża gruntowego za pomocą kolumn o dużej średnicy. W referacie przedstawiono wyniki badań terenowych oraz podano wartości modułów odkształcenia dla kolumn...
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Influence of the Shear Cap Size and Stiffness on the Distribution of Shear Forces in Flat Slabs
PublicationThe scope of this paper is to investigate analytically and numerically the influence of shear cap size and stiffness on the distribution of shear forces in flat slabs in a slab–column-connections-reinforced concrete structure. The effect of support (shear cap) stiffness on the calculation of the length of the shear control perimeter according to the available methods is presented. Based on the analysis, the authors indicate in...
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Cathodic Activation of Titania-Fly Ash Cenospheres for Efficient Electrochemical Hydrogen Production: A Proposed Solution to Treat Fly Ash Waste
PublicationFly ash (FA) is a waste product generated in huge amounts by coal-fired electric and steam-generating plants. As a result, the use of FA alone or in conjunction with other materials is an intriguing study topic worth exploring. Herein, we used FA waste in conjunction with titanium oxide (TiO2) to create (FA-TiO2) nanocomposites. For the first time, a cathodic polarization pre-treatment regime was applied to such nanocomposites...
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Ekspertyza naukowo-techniczna dotycząca analizy i oceny rozwiązań projektowych oraz aspektów wykonawczych posadowienia na kolumnach przemieszczeniowych FDC budynku usługowo-apartamentowego przy ul. Bulwar Gdański 9 w Szczecinie
PublicationUstalenie przyczyn projektowych i wykonawczych wadliwej jakości kolumn fundamentowych do posadowienia budynku biurowo-mieszkalnego
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Electronic transition dipole moment functions of the first singlet Delta gerade and first triplet Delta ungerade states of the Lithium dimer
Open Research DataElectronic transition dipole moment functions (ETDMF) of the first singlet Delta gerade (1sDg) and first triplet Delta ungerade (1tDu) states have been calculated for the Lithium dimer. ETDMFs are needed in understanding processes like photodissociation, photoassociation, cooling, and trapping of molecules. The results of the four ETDMFs have been obtained...