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Search results for: peptide profile
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Designing a high-sensitivity dual-band nano-biosensor based on petahertz MTMs to provide a perfect absorber for early-stage non-melanoma skin cancer diagnostic
PublicationThe purpose of this study is development of a novel high-performance low-Petahertz (PHz) biosensor for non-melanoma skin cancer (NMSC) diagnosis. The presented device is designed to work within a microwave imaging regime, which is a promising alternative to conventional diagnostic methods such as visual examination, dermoscopy, and biopsy. The suggested biosensor incorporates a dual-band perfect absorber (operating bands at 0.909...
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Komputerowe wspomaganie procesu zarządzania bezpieczeństwem funkcjonalnym
PublicationW niniejszym rozdziale przedstawiono oprogramowanie ProSIL wspomagające zarządzanie bezpieczeństwem funkcjonalnym. Program ProSIL składa się z dwóch modułów wspomagających: określenie wymaganego poziomu SIL (moduł ProSILen) oraz weryfikację SIL (moduł ProSILer). W aplikacji ProSIL zaimplementowano opracowaną w trakcie badań metodykę analizy bezpieczeństwa funkcjonalnego w projektowaniu i użytkowaniu systemów SIS zgodnie z wymaganiami...
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Updating the Coupling Algorithm between HYDRUS and MODFLOW in the HYDRUS Package for MODFLOW
PublicationThe HYDRUS-based flow package for MODFLOW (the HPM or the HYDRUS package) is an existing unsaturated zone flow package for MODFLOW. In MODFLOW with the HPM, the groundwater modeling domain is discretized into regular grids that can be combined into multiple zones based on similarities in soil hydrology, topographical characteristics, and the depth to the groundwater. Each of these zones is assigned one unsaturated soil profile...
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Differences in Expression of Genes Involved in Bone Development and Morphogenesis in the Walls of Internal Thoracic Artery and Saphenous Vein Conduits May Provide Markers Useful for Evaluation Graft Patency
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Selected organophosphorus compounds with biological activity. Applications in medicine
PublicationThe purpose of this article is to provide an overview of the latest applications of organophosphorus compounds (OPs) that exhibit biological activity. A large family of OPs have become popular in recent years. The practical application of OPs in modern medicine has been attributed to their unique properties. In this article, the methods used to select these compounds will be emphasized. This paper will first outline the findings...
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Application of Barkhausen method to determine internal stresses in cold-rolled and hot-rolled sheets
PublicationThe paper presents investigations on internal stress distribution in plane hot—or cold-rolled sheets dedicated for the cold-formed profiles. The motivation of the research is a new profile design whose bending technology, incorporating a longitudinal welded joint and hot-dip galvanization after bending and welding introduces additional internal stresses. In order to identify the entirety of stresses in the process of sheet production...
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Impact Assessment of Electric Vehicles Integration and Optimal Charging Schemes Under Uncertainty: A Case Study of Qatar
PublicationThe integration of electric vehicles (EVs) is rapidly growing compared to conventional vehicles in Qatar. To assess how these electric vehicles will impact Qatar’s distribution network, it is necessary to accurately model EV loads. However, EV loads exhibit uncertainties due to driving behaviour in charging time, state of charge (SOC), number of trips, and distance travelled. This necessitates the development of a probabilistic...
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Fatty acyl benzamido antibacterials based on inhibition of DnaK-catalyzed protein folding
PublicationWe have reported that the hsp70 chaperone DnaK from Escherichia coli might assist protein folding by catalyzing the cis/trans isomerization of secondary amide peptide bonds in unfolded or partially folded proteins. In this study a series of fatty acylated benzamido inhibitors of the cis/trans isomerase activity of DnaK was developed and tested for antibacterial effects in E. coli MC4100 cells. Nα-[Tetradecanoyl-(4-aminomethylbenzoyl)]-l-asparagine...
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Wavelet transform-based approach to defect identification in railway carbon contact strips.
PublicationPantographs of electric rail vehicles are fitted with carbon contact strips, which slide along the contact wire of catenary to provide constant electrical contact. Contact strips are exposed to wear and damages. Using damaged contact strips significantly increases the risk of catenary rupture. Therefore, their technical condition has to be inspected frequently. In previous work a 3D laser scanning system was proposed for recording...
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The role of non-profit open access journals in building the country's scientific potential: Reflections on ten years of the International Journal of Pedagogy, Innovation and New Technologies experience
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Bacteriophages as Factories for Eu2O3 Nanoparticle Synthesis
PublicationThe use of phage display to identify peptides with an ability to bind and synthesize Eu2O3 nanoparticles is demonstrated in this report. This is the first report of modified phages specifically binding a lanthanide. The peptides exposed on virions revealed very strong binding to Eu2O3 nanoparticles and the ability to catalyze Eu2O3 nanoparticles’ formation from Eu(OH)3 and Eu(NO3)3 solutions. The luminescence emission spectrum...
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Design and synthesis of new analogues of batracylin linked to tuftsin and retro-tuftsin derivatives
PublicationThe synthesis of derivatives of batracylin with several peptides was elaborated followed by their cytotoxic activity investigation.
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Lipopeptides - synthesis and their properties
PublicationPrzedstawiono syntezę nowych peptydów zawierających Hyp, Met, Gly podstawionych w miejscu histydyny tripeptydu o sekwencji Gly-His-Lys oraz ich odpowiednie modyfikacje na N- i C-końcach. Syntezę zaprojektowanych analogów prowadzono na fazie stałej z zastosowaniem procedury Fmoc. Po otrzymaniu zaplanowanego łańcucha peptydowego metodą karbodiimidową (z zastosowaniem DIC oraz HOBt), przystąpiono do wprowadzania na N-koniec glicyny...
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Specific Binding of Cholesterol to the Amyloid Precursor Protein: Structure of the Complex and Driving Forces Characterized in Molecular Detail
PublicationC99 is the C-terminal membrane-bound fragment of the amyloid precursor protein that is cleaved by γ-secretase to release Aβ peptides, the hallmark of Alzheimer’s disease (AD). Specific interactions of C99 with cholesterol have been proposed to underlie the recognized role of cholesterol in promoting amyloidogenesis. By using molecular dynamics simulations, we studied cholesterol binding to C99 in a lipid bilayer. We determined...
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An optimal designed experiment for the alkaline hydrolysis of feather keratin
PublicationFeathers, burdensome waste from the poultry industry, can be a cheap source of keratin, a protein with excellent physico- chemical, biological, and mechanical properties. Acid and alkaline hydrolyses are usually adopted for isolation of keratin from its natural resources. This study aimed at assessing the statistically significant effect of input variables in the alkaline hydrolysis of keratin from chicken feathers on the process...
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Baktericyna o aktywności gronkowcobójczej wytwarzana przez Staphylococcus xylosus - identyfikacja, oczyszczanie oraz wstępna charakterystyka
PublicationCelem badań prowadzonych w ramach realizacji niniejszej pracy była identyfikacja szczepów bakterii z rodzaju Staphylococcus produkujących substancje o działaniu przeciwbakteryjnym, w tym szczególnie bakteriocyny. W trakcie badań przesiewowych, których przedmiotem było 206 szczepów z kolekcji Katedry Technologii Leków i Biochemii Politechniki Gdaoskiej z gatunków Staphylococcus aureus, Staphylococcus epidermidis oraz Staphylococcus...
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Practical Eco-Driving Strategy for Suburban Electric Multiple Unit
PublicationIn this paper, a practical approach to velocity profile optimization for electric multiple unit was presented. The study focuses on a case of fast urban railway, which is a popular mean of transport across Tricity, Poland. Based on observations and measurements, a potential for improvement of energy efficiency by modifying the speed profile was recognized. In order to conduct necessary calculations, simulation model of railway...
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Mechanism of Osmolyte Stabilization–Destabilization of Proteins: Experimental Evidence
PublicationIn this work, we investigated the influence of stabilizing (N,N,N-trimethylglycine) and destabilizing (urea) osmolytes on the hydration spheres of biomacromolecules in folded forms (trpzip-1 peptide and hen egg white lysozyme─hewl) and unfolded protein models (glycine─GLY and N-methylglycine─NMG) by means of infrared spectroscopy. GLY and NMG were clearly limited as minimal models for unfolded proteins and should be treated with...
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Butyrylcholinesterase signal sequence self-aggregates and enhances amyloid fibril formation in vitro
PublicationAlzheimer’s disease (AD) pathogenesis has been attributed to extracellular aggregates of amyloid β (Aβ) plaques and neurofibrillary tangles in the human brain. It has been reported that butyrylcholinesterase (BChE) also accumulates in the brain Aβ plaques in AD. We have previously found that the BChE substitution in 5′UTR caused an in-frame N-terminal extension of 41 amino acids of the BChE signal peptide. The resultant variant...
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Emerging anticancer activity of candidal glucoseamine-6-phosphate synthase inhibitors upon nanoparticle-mediated delivery
PublicationNumerous glutamine analogues have been reported as irreversible inhibitors of the glucosamine-6-phosphate (GlcN-6-P) synthase in pathogenic Candida albicans in the last 3.5 decades. Among the reported inhibitors, the most effective N3-(4-methoxyfumaroyl)-L-2,3- diaminopropanoic acid (FMDP) has been extensively studied in order to develop its more active analogues. Several peptide−FMDP conjugates were tested to deliver FMDP to its...
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Projektowanie profili maszyn wirnikowych przy zastosowaniu kryterium mini- mum dyssypacji.**2002, 122 s. 126 rys. 2 tab. bibliogr. 35 poz. maszyn. Rozprawa doktorska /2002.06.25/. PG, Wydz. Mechaniczny. Promotor: Prof. dr hab. inż. R. Puzyrewski.
Publication.
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Właściwości otoczki hydratacyjnej wokół β-warstw o zróżnicowanym składzie aminokwasowym - analiza wyników dynamiki molekularnej
Publicationβ-warstwa to jedna z najczęściej spotykanych struktur drugorzędowych w białkach. Jak dotąd mechanizmy rządzące ustrukturyzowaniem wody w warstwie solwatacyjnej wokół tej struktury są słabo poznane [1]. W celu lepszego zrozumienia zjawiska hydratacji wokół struktur o konformacji β-warstwy przeprowadzono analizę wyników pochodzących z symulacji metodą dynamiki molekularnej β-warstw składających się z 8 równoległych nici o różnym...
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Solid Phase Synthesis and Biological Activity of Tuftsin Conjugates
PublicationNew tuftsin/retro-tuftsin conjugates were designed and synthesized using a classical fluorenylmethoxycarbonyl (Fmoc) solid phase procedure. All the peptide conjugates were divided into three series: 1,4-dihydroxyanthraquinone (type A), 1-nitroacridine (type B), and 4-carboxyacridone (type C) derivatives. In type A conjugates, the N-terminal group of the peptide chain is directly connected to the anthraquinone ring at C1 (Scheme...
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Oxylipin profiling for clinical research: Current status and future perspectives
PublicationOxylipins are potent lipid mediators with increasing interest in clinical research. They are usually measured in systemic circulation and can provide a wealth of information regarding key biological processes such as inflammation, vascular tone, or blood coagulation. Although procedures still require harmonization to generate comparable oxylipin datasets, performing comprehensive profiling of circulating oxylipins in large studies...
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Understanding the formation of metastable furan dication in collisions with ions
PublicationThis work relies on complementary theoretical and experimental studies of the processes induced by ion-furan collisions. Results of the Molecular Dynamics simulations and exploration of the energy profiles combined with coincidence mass spectrometry provide complete picture of the fragmentation of furan dication.
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Structure-activity relationship study of tetrapeptide inhibitors of the Vascular Endothelial Growth Factor A binding to Neuropilin-1
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Comparative studies of the Acinetobacter genus and the species identification method based on the recA sequences
PublicationZaproponowano metodę genotypowania bakterii rodzaju Acinetobacter, opartą o analizę sekwencji genów recA, amplifikację fragmentów genu recA i analizę profili fragmentów restrykcyjnych po cięciu produktów reakcji PCR enzymami restrykcyjnymi (recA PCR/RFLP). Profile RFLP otrzymane za pomocą enzymu Tsp509I są użyteczne w identyfikacji poszczególnych gatunków bakterii rodzaju Acinetobacter. Na podstawie analizy otrzymanych sekwencji...
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Strategy, effectiveness and quality of non-profit organisations as exempli-fied by Polish higher Education Institutions. VATT Governement Inst. Econ. Res. C**2002 [nr] 290 s. 189-202, 7 rys. bibliogr. 20 poz. Discussion papers. Workshopon Studies for Nordthern. Kalastajatorrpa,30-31 May 2002. Strategia, efektywność i jakość organizacji non-profit na przykładzie pol- skich wyższych uczelni.
PublicationW pracy wskazano, że do oceny jakości i efektywności organizacji niedochodo-wych zasadne jest wykorzystanie metod stosowanych w biznesie. W szczególno-ści zaproponowano zastosowanie metody balanced scorecard, benchmarkingu dooceny efektywności i jakości funkcjonowania instytucji szkolnictwa wyższego.Wskazano na możliwość wykorzystaniania analizy SWOT do opracowania strategiiuczelni.
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Synthesis and structure analysis of ferrocene‐containing pseudopeptides
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Experimental Testing of Innovative Cold-Formed "GEB" Section / Badania Eksperymentalne Innowacyjnego Kształtownika Giętego Na Zimno Typu „Geb“
PublicationOne of the major advantages of light gauge steel structures made of cold-formed steel sections is their low weight, so manufacturers are increasingly using the possibilities of those sections for the production of typical single-storey steel structures systems. Well known profiles, such as Z, C and the so called hat sections that have been studied and described in the literature, are used mainly as purlins or truss components....
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The idea of a robotic single-sided lapping system
PublicationThis paper reviews the idea of a robotic lapping system. Robot’s assistance automates the lap-ping process and supports the development of a flexible lapping system. However, the main aim behind the idea of a robotic lapping system is to provide improved means for controlling the posi-tion of conditioning rings on a lapping plate. Due to the kinematics of lapping process, the profile wear of the tool is not constant along the radius....
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Keratinocyte-derived small extracellular vesicles supply antigens for CD1a-resticted T cells and promote their type 2 bias in the context of filaggrin insufficiency
PublicationIntroduction: Exosome-enriched small extracellular vesicles (sEVs) are nanosized organelles known to participate in long distance communication between cells, including in the skin. Atopic dermatitis (AD) is a chronic inflammatory skin disease for which filaggrin (FLG) gene mutations are the strongest genetic risk factor. Filaggrin insufficiency affects multiple cellular function, but it is unclear if sEV-mediated cellular communication...
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Fluconazole resistant Candida auris clinical isolates have increased levels of cell wall chitin and increased susceptibility to a glucosamine-6-phosphate synthase inhibitor
PublicationIn 2009 Candida auris was first isolated as fungal pathogen of human disease from ear canal of a patient in Japan. In less than a decade, this pathogen has rapidly spread around the world and has now become a major health challenge that is of particular concern because many strains are resistant to multiple class of antifungal drugs. The lack of available antifungals and rapid increase of this fungal pathogen provides an incentive...
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DNA Methylation Changes Induced by Redox-Active Compounds—Choosing the Right PCR-Based Method
PublicationThe impact of catechins on the expression profile of redox-related genes in HT29 cell line has been studied recently by our group using Oxidative Stress RT2 Profiler PCR Array. Within the examined panel of 84 genes, the down-regulation of SRXN1 gene was unique among other up-regulated genes. We hypothesized that the observed down-regulation resulted from DNA methylation and have exploited this observation to choose the proper strategy...
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All-gather Algorithms Resilient to Imbalanced Process Arrival Patterns
PublicationTwo novel algorithms for the all-gather operation resilient to imbalanced process arrival patterns (PATs) are presented. The first one, Background Disseminated Ring (BDR), is based on the regular parallel ring algorithm often supplied in MPI implementations and exploits an auxiliary background thread for early data exchange from faster processes to accelerate the performed all-gather operation. The other algorithm, Background Sorted...
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Kaskada - scenariusze analizy strumieni multimedialnych
PublicationZaprezentowano podstawowe mechanizmy działania platformy KASKADA ze względu na wykonywanie usług prostych związanych z realizacją algorytmów analizy strumieni multimedialnych, jak również usług złożonych dotyczących wykonywania bardziej skomplikowanych scenariuszy. Rozpatrzono problemy implementacyjne na przykładzie scenariusza analizy strumieni z kamer wideo.
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Metodologia wytwarzania aplikacji WWW.
PublicationPrzedstawiono opis metodologii wytwarzania aplikacji WWW bazujących na technologii J2EE, zaprezentowano fazy wytwarzania oprogramowania, wykorzystanie analizy i projektowania obiektowego oraz wzorce projektowe, jak również dokonano porównania narzędzi wspomagających wytwarzanie i wdrożenie aplikacji WWW.
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Zarządzanie zasobami obliczeniowymi w klastrowym środowisku przetwarzania strumieni multimedialnych
PublicationZaprezentowano zintegrowany model zarządzania multimedialnym systemem rozproszonym, przetwarzającym strumienie danych, jak również opisano koncepcję jego implementacji w platformie KASDADA. Zdefiniowano charakterystyki wydajnościowe i wiarygodnościowe oraz określono klasę przetwarzanych algorytmów analizy strumieni. Sformułowano tezy rozprawy: (1) Przy akceptowanej wiarygodności przetwarzania strumieni, obciążenie węzła dla analizowanej...
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Improving all-reduce collective operations for imbalanced process arrival patterns
PublicationTwo new algorithms for the all-reduce operation optimized for imbalanced process arrival patterns (PAPs) are presented: (1) sorted linear tree, (2) pre-reduced ring as well as a new way of online PAP detection, including process arrival time estimations, and their distribution between cooperating processes was introduced. The idea, pseudo-code, implementation details, benchmark for performance evaluation and a real case example...
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Process arrival pattern aware algorithms for acceleration of scatter and gather operations
PublicationImbalanced process arrival patterns (PAPs) are ubiquitous in many parallel and distributed systems, especially in HPC ones. The collective operations, e.g. in MPI, are designed for equal process arrival times (PATs), and are not optimized for deviations in their appearance. We propose eight new PAP-aware algorithms for the scatter and gather operations. They are binomial or linear tree adaptations introducing additional process...
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Wpływ drgań wywołanych wbijaniem ścianki szczelinowej na obiekty sąsiednie
PublicationPogrążanie metodą wibracyjną ścianki szczelnej stanowiącej obudowę wykopów w terenie mocno zurbanizowanym oddziaływuje na obiekty sąsiednie. Z tego względu ważny jest dobór technologii pogrążania ścianki oraz profilu grodzic na etapie projektu budowlanego. Zasięg i stopień szkodliwości wpływu drgań na obiekt zależy między innymi od jego charakterystyki, parametrów podłoża gruntowego, kształtu zagłębianych profili i parametrów młota...
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Propulsion and Maneuvering Systems’ Characteristics of the U.S. Flagged Great Lakes Self-Unloading Bulk Carriers
PublicationPaper contains an overview of the propulsion and maneuvering systems’ characteristics of United States flagged Great Lakes self - unloading bulk carriers. A contrast between the importance of the transport task carried by those vessels to their low number and considerable age suggests the need to review and understand their complexity as well as complexity of their operations in order to provide suitable energy- and operational...
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Isolation of Bacteriocin-producing Staphylococcus spp. Strains from Human Skin Wounds, Soft Tissue Infections and Bovine Mastitis
PublicationA collection of 206 Staphylococcus spp. isolates was investigated for their ability to produce compounds exhibiting antistaphylococcal activity. This group included Staphylococcus aureus, Staphylococcus epidermidis, Staphylococcus xylosus strains recovered from bovine mastitis (n = 158) and human skin wounds and soft tissues infections (n = 48). Production of substances with antimicrobial activity was observed in six strains. Five...
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An inclination in Thermal Energy Using Nanoparticles with Casson Liquid Past an Expanding Porous Surface
PublicationPhysical aspects of inclined MHD nanofluid towards a stretching sheet embedded in a porous medium are visualized. Two types of nanoparticles are used named as copper and alumna dioxide with water as base fluid. Similarity transformations are used to convert the partial differential equations into the set of ordinary differential equation. Closed solutions are found to examine the velocity and the temperature profiles. It is examined...
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Identification of volatile compounds in raw spirits of different organoleptic quality
PublicationGłównym celem prezentowanych badań było określenie składu lotnej frakcji destylatów rolniczych, a następnie wyodrębnienie profili zapachowych destylatów rolniczych różniących się właściwościami sensorycznymi ocenionymi na podstawie klasycznej analizy sensorycznej. Profile zapachowe tworzono z wykorzystaniem kapilarnej chromatografii gazowej połączonej ze spektrometrią mas (GC-MS). Do ekstrakcji lotnych związków zastosowano technikę...
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Influence of advertisement in social media in knowledge based economy
PublicationIn the era of knowledge based economies every year the number of companies that starting their advertising campaigns increase. According to Social Enterprise Report, 38% of leading companies in Poland have its profile on social networking sites. In this paper, we are going to introduce two case studies. The first one is the advertising campaign of Heyah based on the history of communism. The second case study is the continuation...
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A universal method for the identification of genes encoding amatoxins and phallotoxins in poisonous mushrooms
PublicationABSTRACT Background. As the currently known diagnostic DNA targets amplified in the PCR assays for detection of poisonous mushrooms have their counterparts in edible species, there is a need to design PCR primers specific to the genes encoding amanitins and phallotoxins, which occur only in poisonous mushrooms. Objective. The aim of the study was testing of PCR-based method for detection of all genes encoding hepatotoxic cyclic...
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The Conference Report of Why R? Turkey 2022: The First R Conference with Call For Papers in Turkey
PublicationWhy R? Turkey 2022 was a non-profit conference that aimed to bring Turkish R users together and encourage them to attend the R conferences. The targeted audience of the conference consisted of, data scientists, data analysts, and all R users from academia and industry. The three-day conference, which consisted of several events such as workshops, regular talks, lightning talks, short tutorials, and panels, was free of charge and...
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The immunoregulatory effects of edeine analogues in mice
PublicationZbadano właściwości immunoregulatorowe kilku, otrzymanych na drodze syntezy, uproszczonych analogów peptydowego antybiotyku edeiny w testach in vivo i in vitro z wykorzystaniem modelu mysiego. Jako związek referencyjny zastosowano edeinę B. Otrzymane peptydy wykazywały efekt stymulacyny na proliferację splenocytów z użyciem konkawaliny, podczas gdy zastosowanie mitogenu powodowało hamowanie proliferacji splenocytów. Peptydy hamowały...
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A new approach of coastal cliff monitoring using Mobile Laser Scanning
PublicationThe article proposes a new approach of coastal cliff monitoring which bases on a new comprehensive monitoring system, being a combination of mobile scanning from the sea with the geotechnical stability analysis. Mobile laser scanning is an innovative solution for 3D data collection which allows the monitored object geometry to be precisely measured, thus providing opportunities for series of analyses contributing to the development...