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Transanal Endoscopic Microsurgery via TriPort Access System With No General Anesthesia and Without Sphincter Damage
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Identification and properties of the Deinococcus grandis andDeinococcus proteolyticus single-stranded DNA binding proteins (SSB)
PublikacjaW celu poznania właściwości biochemicznych białek SSB pochodzących z Deinococcus grandis (DgrSSB) i Deinococcus proteolyticus (DprSSB) sklonowano zaamplifikowane w reakcji PCR geny ssb w systemie ekspresyjnym Escherichia coli. Geny składają się z 891(DgrSSB) i 876 (DprSSB) nukleotydów kodujących odpowiednio 296 i 291 reszt aminokwasowych o teoretycznie wyznaczonej masie cząsteczkowej dla białek, równej 32,29 i 31,33 kDa. Sekwencja...
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Usefulness of the PCR technique for bacterial DNA detection in blood of the patients after ''oppened heart'' operations.
PublikacjaOperacje kardiochirurgiczne w krążeniu pozaustrojowym (KPU) poprzez ogromny uraz, powodowanie występowania zaburzeń odporności oraz uszkodzenie barier anatomicznych stwarzają sytuację wybitnie sprzyjającą rozwojowi powikłań infekcyjnych u tych chorych. Prowadzenie terapii antybiotykowej profilaktycznej i leczniczej, a także selektywna dekontaminacja przewodu pokarmowego może utrudniać i przedłużać czas rozpoznania obecności bakterii...
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Approximate solution for Euler equations of stratified water via numerical solution of coupled KdV system
PublikacjaWe consider Euler equations with stratified background state that is valid for internal water waves. The solution of the initial-boundary problem for Boussinesq approximation in the waveguide mode is presented in terms of the stream function. The orthogonal eigenfunctions describe a vertical shape of the internal wave modes and satisfy a Sturm-Liouville problem. The horizontal profile is defined by a coupled KdV system which is...
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Increased resonance energy transfer between fluorophores bound to DNA in proximity to metallic silver particles.
PublikacjaZbadano wpływ nanocząstek metalicznego srebra na rezonansowe przekazywanie energii między fluoroforami związanymi z DNA. Donor (pochodna kumaryny) i akceptor (Cy3) umieszczono na przeciwległych końcach DNA o strukturze podwójnej helisy i o 23 parach bazowych. W nieobecności cząstek srebra wydajność przekazywania energii w tym układzie wynosiła ok. 9%, zaś po umieszczeniu go między kwarcowymi płytkami pokrytymi filmem wysepek...
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Multiple solutions of indefinite elliptic systems via a Galerkin-type Con- ley index theory
PublikacjaW pracy wykazano prawdziwość hipotezy Angenenta i van der Vorsta dotyczącąilości rozwiązań pewnego układu eliptycznego. Liczbę rozwiazań szacuje się zdołu przy pomocy niezmiennika topologicznego zwanego uogólnionym indeksemMorse`a. W dowodzie stosuje sie niezmienniczy index Conleya w przestrzeniachHilberta.
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Acid-triggered release from sterically stabilized fusogenic liposomes via ahydrolytic DePEGylation strategy
PublikacjaOpracowano nowe, labilne w stosunku do kwasów, pochodne diplasmenylo-cholinysprzężone z glikolem polietylenowym (PEG) i zbadano ich wpływ na lipozomy.Opisano szybkość hydrolizy oraz szybkość uwalniania oraz kinetykę tworzenialipozomów DOPE stabilizowanych BVEP stosunków molowych BCEP/DOPE wynoszących1:99, 3:97 oraz 5:95. Zbadano widma 31P NMR, także dla układów z jonami Mn2+dla różnych wartości pH.
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Orientation-aware ship detection via a rotation feature decoupling supported deep learning approach
PublikacjaShip imaging position plays an important role in visual navigation, and thus significant focuses have been paid to accurately extract ship imaging positions in maritime videos. Previous studies are mainly conducted in the horizontal ship detection manner from maritime image sequences. This can lead to unsatisfied ship detection performance due to that some background pixels maybe wrongly identified as ship contours. To address...
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A review on carbon storage via mineral carbonation: Bibliometric analysis, research advances, challenge, and perspectives
PublikacjaMineral carbonation as a way of carbon storage has received a particular attention in the reduction of carbon dioxide (CO2) emission . This work gives a comprehensive description of the research trends and hotspots in the field of mineral carbonation for carbon storage based on bibliometric analysis. A total of 1507 articles were collected from the Web of Science database from 2010 to 2022 and analyzed in details, using a Citepace...
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Dissolution of Nb-doped hydroxyapatite prepared via low-temperature mechanochemical method: Spectroscopy studies
PublikacjaCalcium phosphate glass ceramics with nominal hydroxyapatite stoichiometry doped with niobium were synthesized using simple as well as low-temperature mechanochemical method and then in the form of compressed pellet were submitted to the static dissolution process in distilled water for one month. The results of structural analysis, performed mainly on the base of spectroscopic methods such as: infrared absorption spectroscopy,...
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Unraveling the Interplay between DNA and Proteins: A Computational Exploration of Sequence and Structure-Specific Recognition Mechanisms
PublikacjaMy PhD dissertation focused on DNA-protein interactions and the recognition of specific DNA sequences and structures. I discovered that acidic amino acid residues (Asp/Glu) play a crucial role by exhibiting a preference for cytosine. Their contribution to binding affinity depends on nearby cytosines, balancing electrostatic repulsion with specific interactions. Acidic residues act as negative selectors, discouraging non-cytosine...
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When Neural Networks Meet Decisional DNA: A Promising New Perspective for Knowledge Representation and Sharing
PublikacjaABSTRACT In this article, we introduce a novel concept combining neural network technology and Decisional DNA for knowledge representation and sharing. Instead of using traditional machine learning and knowledge discovery methods, this approach explores the way of knowledge extraction through deep learning processes based on a domain’s past decisional events captured by Decisional DNA. We compare our approach with kNN (k-nearest...
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Photofragmentation of tetrahydrofuran molecules in the vacuum-ultraviolet region via superexcited states studied by fluorescence spectroscopy
PublikacjaPhotofragmentation of tetrahydrofuran molecules in the vacuum-ultraviolet region, producing excited atomic and molecular fragments, has been studied over the energy range 14-68 eV using photon-induced fluorescence spectroscopy. Excited hydrogen atoms H(n), n = 3-11, have been detected by observation of the Hα to Hı lines of the Balmer series. The diatomic CH(A2Δ), CH(B2Σ-) and C2(d3Πg) fragments, which are excited to low vibrational...
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Synthesis of 3-Carbamoyl b-Lactams via Manganese(III)-Promoted Cyclization of N-Alkenylmalonamides
PublikacjaManganese(III)-promoted cyclization of N-alkenylmalonamides (¼N-alkenylpropanediamides) gave 3-(aryl/(alkylamino)carbonyl) b-lactams as well as 3-(aryl/(alkylamino)thiocarbonyl) b-lactams. The relative configuration of the obtained products was unambiguously determined by X-ray crystallography. The proposed method is very useful for the one-pot synthesis of a number of 3-(aryl/ (alkylamino)carbonyl) b-lactams, especially those...
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NO-BROADCASTING OF NON-SIGNALLING BOXES VIA OPERATIONS WHICH TRANSFORM LOCAL BOXES INTO LOCAL ONES
PublikacjaWe deal with families of probability distributions satisfying non-signalling condition, called non-signalling boxes and consider a class of operations that transform local boxes into local ones (the one that admit LHV model). We prove that any operation from this class cannot broadcast a bipartite non-local box with 2 binary inputs and outputs. We consider a function called anti-Robustness which can not decrease under these operations....
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Thermo-mechanical reclaiming of ground tire rubber via extrusion at low temperature: Efficiency and limits
PublikacjaThermomechanical reclaiming of ground tire rubber (GTR) was performed at different temperatures (60, 120, and 180°C) using a co-rotating twin-screw extruder. Obtained samples were used in styrene-butadiene rubber (SBR) blends. As reference samples, SBR compounds containing untreated GTR were used. Curing characteristics, static and dynamic mechanical properties, and morphology of the obtained blends were determined. The results...
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Hydrogen migration in formation of NH(A3Π) radicals via superexcited states in photodissociation of isoxazole molecules
PublikacjaFormation of the excited NH(A 3Π) free radicals in the photodissociation of isoxazole (C3H3NO) molecules has been studied over the 14-22 eV energy range using photon-induced fluorescence spectroscopy. The NH(A 3Π) is produced through excitation of the isoxazole molecules into higher-lying superexcited states. Observation of the NH radical, which is not a structural unit of the isoxazole molecule, corroborates the hydrogen atom...
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Precipitation of Spherical Vaterite Particles via Carbonation Route in the Bubble Column and the Gas-Lift Reactor
PublikacjaSpherical vaterite particles were produced by carbonation of calcium chloride solution with addition of ammonia to facilitate CO2 absorption. Synthesis of calcium carbonate was carried out in a bubble column or gas-lift reactor. The course of the reaction was monitored by pH measurements. Precipitated solids were analyzed by Fourier-transformed infrared spectroscopy, x-ray powder diffraction and scanning electron microscopy, and...
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DNA Methylation Changes Induced by Redox-Active Compounds—Choosing the Right PCR-Based Method
PublikacjaThe impact of catechins on the expression profile of redox-related genes in HT29 cell line has been studied recently by our group using Oxidative Stress RT2 Profiler PCR Array. Within the examined panel of 84 genes, the down-regulation of SRXN1 gene was unique among other up-regulated genes. We hypothesized that the observed down-regulation resulted from DNA methylation and have exploited this observation to choose the proper strategy...
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Optimization of boron-doping process of titania nanotubes via electrochemical method toward enhanced photoactivity
PublikacjaIn this work, we were focused on the development of the electrochemical approach resulting in a stable boron doping of titania nanotubes. The doping procedure concerns anodic polarization of as-anodized titania in a H3BO3 solution acting as n boron precursor. The series of attempts were taken in order to elaborate the most beneficial doping conditions. The parameters of electrochemical doping allowing to obtain boron-doped titania...
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Biopolyols obtained via crude glycerol-based liquefaction of cellulose: their structural, rheological and thermal characterization
PublikacjaIn this work lignocellulose biomass liquefaction was used to produce biopolyols suitable for the manufacturing of rigid polyurethane foams. In order to better evaluate the mechanism of the process, pure cellulose was applied as a raw material. The effect of time and temperature on the effectiveness of liquefaction and the parameters of resulting biopolyols were characterized. The prepared materials were analyzed in terms of their...
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Tuning transfer function of fiber-optic Fabry-Pérot interferometer via introduction of birefringence in the cavity
PublikacjaThe study investigates the impact of birefringence exhibited by the cavity material of a fiber-optic Fabry-Pérot interferometer on its transfer function. The theoretical approach to analyze the effect of birefringence in the cavity of a plane Fabry-Pérot interferometer is described. The case of high- and low-finesse interferometer is investigated. It is shown that introduction of a birefringent medium of optimized parameters can...
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Genome-wide DNA methylation profiling of the regenerative MRL/MpJ mouse and two normal strains
PublikacjaAims We aimed to identify the pivotal differences in the DNA methylation profiles between the regeneration capable MRL/MpJ mouse and reference mouse strains. Materials and Methods Global DNA methylation profiling was performed in ear pinnae, bone marrow, spleen, liver, heart from uninjured adult females of the MRL/MpJ and C57BL/6J and BALB/c. Results and conclusion A number of differentially methylated regions distinguishing between...
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How proteins bind to DNA: target discrimination and dynamic sequence search by the telomeric protein TRF1
PublikacjaTarget search as performed by DNA-binding proteins is a complex process, in which multiple factors contribute to both thermodynamic discrimination of the target sequence from overwhelmingly abundant off-target sites and kinetic acceleration of dynamic sequence interrogation. TRF1, the protein that binds to telomeric tandem repeats, faces an intriguing variant of the search problem where target sites are clustered within short fragments...
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Molecular basis for the DNA damage induction and anticancer activity of asymmetrically substituted anthrapyridazone PDZ-7
Publikacjanthrapyridazones, imino analogues of anthraquinone, constitute a family of compounds with remarkable anti-cancer activity. To date, over 20 derivatives were studied, of which most displayed nanomolar cytotoxicity towards broad spectrum of cancer cells, including breast, prostate and leukemic ones. BS-154, the most potent derivative, had IC50 values close to 1 nM, however, it was toxic in animal studies. Here, we characterize another...
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Biopolyols obtained via microwave-assisted liquefaction of lignin: structure, rheological, physical and thermal properties
PublikacjaThe present study examined the application of polyols obtained via microwave-assisted liquefaction of lignin in the production of rigid polyurethane foam. Lignin was liquefed in crude glycerol and 1,4-butanediol at diferent temperatures (130–170 °C), without a catalyst and using various biomass concentrations (15 and 30 wt%). The physicochemical properties, process yield, and FTIR-based identifcation of the obtained polyols were...
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Support Product Development Framework by Means of Set of Experience Knowledge Structure (SOEKS) and Decisional DNA
PublikacjaIn this paper, we propose a framework to support product development activi-ties by utilizing Set of Experience Knowledge Structure (SOEKS) and Decisional DNA (DDNA). This idea will provide a new direction to researchers working on product development, especially designers and manufacturers. They will be working on the same platform and this will be reducing their communication gap. Once the final idea is perceived about product...
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Emplying set of experience knowledge structure and decisional DNA to enhance industrial design: conceptual approach
PublikacjaZaprezentowano koncepcje wspomagania projektowania przemyslowego przy pomocy nowoczenego podejscia do reprezentacji wiedzy w postaci SOEKS oraz Decyzyjnego DNA
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Silver nanoparticles induce premutagenic DNA oxidation that can be prevented by phytochemicals from Gentiana asclepiadea
PublikacjaAmong nanomaterials, silver nanoparticles (AgNPs) have the broadest and most commercial applications due to their antibacterial properties, highlighting the need for exploring their potential toxicity and underlying mechanisms of action. Our main aim was to investigate whether AgNPs exert toxicity by inducing oxidative damage to DNA in human kidney HEK 293 cells. In addition, we tested whether this damage could be counteracted...
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Preparation of Pseudopeptides Building Blocks with Retro-Thioamide Bond Mediated via Thiocarbamoyl Meldrum's Acid
PublikacjaAn easy and efficient synthesis of pseudo tripeptide containing a thiomalonamide moiety was developed. Isothiocyanate derivatives of amino acids react smoothly with 2,2-dimethyl-1,3-dioxane-4,6-dione yielding new thiocarbamoyl Meldrum's acids. Thermal decomposition of this new Meldrum's acid derivatives generate thiocarbamoyl ketenes, which acylate amino acid esters to give pseudo tripeptides.
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imPlatelet classifier: image‐converted RNA biomarker profiles enable blood‐based cancer diagnostics
PublikacjaLiquid biopsies offer a minimally invasive sample collection, outperforming traditional biopsies employed for cancer evaluation. The widely used material is blood, which is the source of tumor-educated platelets. Here, we developed the imPlatelet classifier, which converts RNA-sequenced platelet data into images in which each pixel corresponds to the expression level of a certain gene. Biological knowledge from the Kyoto Encyclopedia...
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Defining a novel domain that provides an essential contribution to site-specific interaction of Rep protein with DNA
PublikacjaAn essential feature of replication initiation proteins is their ability to bind to DNA. In this work, we describe a new domain that contributes to a replication initiator sequence-specific interaction with DNA. Applying biochemical assays and structure prediction methods coupled with DNA–protein crosslinking, mass spectrometry, and construction and analysis of mutant proteins, we identified that the replication initiator of the...
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Decisional DNA (DDNA) Based Machine Monitoring and Total Productive Maintenance in Industry 4.0 Framework
PublikacjaThe entire manufacturing spectrum is transforming with the advent of Industry 4.0. The features of Set of Experience Knowledge Structure (SOEKS) and Decisional DNA (DDNA) were utilized for developing Virtual Engineering Objects (VEO), Virtual Engineering Process (VEP) and Virtual Engineering Factory (VEF), which in turn facilitate the creation of smart factories. In this study, DDNA based Machine Monitoring for Total Maintenance...
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Sequence-dependent structural properties of B-DNA: what have we learned in 40 years?
PublikacjaThe structure of B-DNA, the physiological form of the DNA molecule, has been a central topic in biology, chemistry and physics. Far from uniform and rigid, the double helix was revealed as a flexible and structurally polymorphic molecule. Conformational changes that lead to local and global changes in the helix geometry are mediated by a complex choreography of base and backbone rearrangements affecting the ability of the B-DNA...
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Mechanical analysis of eccentric defected bilayer graphene sheets considering the van der Waals force
PublikacjaIn this article, we have tried to simulate nonlinear bending analysis of a double-layered graphene sheet which contains a geometrical imperfection based on an eccentric hole. The first-order shear deformation theory is considered to obtain the governing equations. Also, the nonlinear von Kármán strain field has been assumed in order to obtain large deformations. Whereas the double-layered graphene sheet has been considered, the...
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Mitochondrial DNA copy number and trimethylamine levels in the blood: New insights on cardiovascular disease biomarkers
PublikacjaAmong cardiovascular disease (CVD) biomarkers, the mitochondrial DNA copy number (mtDNAcn) is a promising candidate. A growing attention has been also dedicated to trimethylamine-N-oxide (TMAO), an oxidative derivative of the gut metabolite trimethylamine (TMA). With the aim to identify biomarkers predictive of CVD, we investigated TMA, TMAO, and mtDNAcn in a population of 389 coronary artery disease...
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Additive Effect of Bromides and Chlorides on the Performance of Perovskite Solar Cells Fabricated via Sequential Deposition
PublikacjaA two-step sequential deposition method has been applied to prepare the solar cells with two types of perovskites Cs0.15FA0.85Pb(I0.95Cl0.05)3 and Cs0.15FA0.85Pb(I0.95Br0.05)3. In order to obtain the perovskite layers, the different sources of bromine and chlorine atoms were used for synthesis. The performance and time stability of chloride-based photocells are worse in comparison to the bromide-based devices. It can be explained...
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A selection of PID type controller settings via LQR approach for two-wheeled balancing robot
PublikacjaThe problem of PID type controller tuning has been addressed in this paper. In particular, a method of selection of PD settings based on the solution of linear–quadratic optimisation problem using the energy criterion has been investigated. Thus, the possibility of transforming optimal settings of the linear–quadratic regulator into the settings of the controller in the classical control system has been given. The presented methodology...
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Real-time isothermal DNA amplification monitoring in picoliter volumes using an optical fiber sensor
PublikacjaRolling circle amplification (RCA) of DNA can be considered as a great alternative to the gold standard polymerase chain reaction (PCR), especially during this pandemic period, where rapid, sensitive, and reliable test results for hundreds of thousands of samples are required daily. This work presents the first research to date on direct, real-time and label-free isothermal DNA amplification monitoring using a microcavity in-line...
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Assessment of potentially cutting GHG emissions from shipping in relation to energy consumption trends using Fuzzy Analytic Hierarchy Process
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Application of potential theory in calculating wave-induced vertical forces on horizontal cylinders near a plane boundary
PublikacjaHydrodynamiczne obciażenia wywołane falowaniem morskim działajace na poziomo ułożoną przy dnie rurę, rozpatrywane są w ujęciu dyfrakcyjnym przy założeniu istnienia funkcji potencjału. Potencjał zdefiniowano jako superpozycję potencjału fali inicjującej oraz potencjału perturbacji spowodowanej istnieniem obiektu przy dnie. Wyniki rozwiązań teoretycznych porównano z wynikami doswiadczeń przeprowadzonych w Wielkim Kanale falowym w...
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Grzegorz Boczkaj dr hab. inż.
Osoby -
Phan Van Hung Dr
OsobyPhan Van Hung graduated as an Engineer in Marine Navigation and Master Eng. Of Science in Navigation in 2010, 2013 from Vietnam Maritime University, respectively. He received a Doctor’s Degree, specializing in Maritime Safety System Engineering, at the Department of Maritime Transportation System, Mokpo National Maritime University, South Korea on August 24th, 2018. Since 2010, he has been with Vietnam Maritime University. His...
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Analiza wpływu parametrów budynku i źródeł ciepła na zapotrzebowanie na energię pierwotną budynku mieszkalnego wielorodzinnego
PublikacjaW publikacji przedstawiono analizę parametrów, które mogą wpływać na charakterystykę energetyczną budynków mieszkalnych wielorodzinnych. Analizą objęto stopień ochrony cieplnej budynku, rodzaj źródła ciepła oraz wyposażenie lokali mieszkalnych określające wymagane strumienie powietrza wentylacyjnego. Wskazane zostały uwarunkowania uzyskania wartości wskaźnika EP budynku poniżej wartości granicznych, określonych w przepisach techniczno-budowlanych.
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Narzędzia kształcenia na odległość i ich wykorzystanie na Wydziałach Inżynierii Lądowej Politechniki Gdańskiej i Warszawskiej.
PublikacjaW artykule przedstawiono doświadczenia we wdrażaniu narzędzi kształcenia na odległość na Wydziałach Inżynierii Lądowej Politechniki Gdańskiej i Warszawskiej. Zaprezentowano tworzenie zasobów edukacyjnych (wykłady, ćwiczenia, testy) oraz wspomaganie zajęć z przedmiotu Podstawy Informatyki przy pomocy darmowej platformy internetowej Moodle. Kształcenie na odległość, internetowa platforma Moodle
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Planowanie partycypacyjne w Warszawie nakierowane na poprawę jakości przestrzeni publicznych, ukazane na przykładzie Miasteczka Wilanów
PublikacjaPlanowanie przestrzenne jest tą dziedziną, w której obecność́ elementów demokracji bezpośredniej ma szczególne uzasadnienie, ponieważ dotyczy interesów zarówno całej społeczności lokalnej, jak i poszczególnych jej członków. Opracowanie zawiera opis działań mieszkańców stolicy, którzy zainteresowani swoim otoczeniem zmieniają je według ich potrzeb. W Warszawie partycypacja obywateli staje się coraz częstszą praktyką podczas debaty...
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Holistyczne zarządzanie obiektami zdegradowanymi na obszarach miejskich na przykładzie bazy paliw w Gdańsku Nowym Porcie.
PublikacjaRosnąca liczba zdegradowanych obiektów na terenach miejskich stanowi istotny problem większości miast europejskich. Obecność tego rodzaju obiektów w strukturze miasta wiąże się z licznymi problemami o charakterze ekonomicznym, urbanistycznym i społecznym, a często powodują również zanieczyszczenie środowiska i obniżenie walorów krajobrazowych. Skuteczne zagospodarowanie takich obiektów umożliwia wdrożenie holistycznej rewitalizacji,...
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Opinia na temat przecieków występujących na płycie fundamentowej budynki Muzeum II Wojny Światowej w Gdańsku.
PublikacjaEkspertyza dotyczy określenia przyczyn przecieków w płycie fundamentowej oraz środków zaradczych.
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Badanie przyczyn korozji zbiorników magazynowych na paliwa na terenie stacji benzynowej grupy Lotos w Pruszkowie
PublikacjaPrzedstawiono wyniki oględzin zbiornika na olej napędowy eksploatowany na stacji benzynowej w Pruszkowie. Przedstawiono możliwe przyczyny powstania zniszczeń korozyjnych w dolnej części zbiornika.
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Koncepcja szacowania wpływu drgań komunikacyjnych na budynki i na ludzi przy użyciu sztucznych sieci neuronowych
PublikacjaKoncepcja szacowania wpływu drgań komunikacyjnych na budynki i na ludzi przy użyciu sztucznych sieci neuronowych