Search results for: HEAD MODEL
-
Mutually polarizable QM/MM model with in situ optimized localized basis functions
PublicationWe extend our recently developed quantum-mechanical/molecular mechanics (QM/MM) approach [Dziedzic et al., J. Chem. Phys. 145, 124106 (2016)] to enable in situ optimization of the localized orbitals. The quantum subsystem is described with ONETEP linear-scaling density functional theory and the classical subsystem – with the AMOEBA polarizable force field. The two subsystems interact via multipolar electrostatics and are fully...
-
Spectroscopic Optical Coherence Tomography for Thin Layer and Foil Measurements
PublicationThe main goal of this research was to assess if it is possible to evaluate the thickness of thin layers (both thin films on the surface and thin layers below the surface of the tested object) and foils using optical coherence tomography (OCT) for thickness assessment under the resolution of the standard commercially available OCT measurement system. In the proposed solution, light backscattered from the evaluated thin layer has...
-
Transiluminacyjne monitorowanie stanu przestrzeni podpajęczynówkowej
PublicationTransiluminacja tkanek ludzkiego ciała w celach diagnostycznych jest stosowana od ponad stu lat. Metoda transiluminacji w bliskiej podczerwieni z rozpraszaniem zwrotnym (NIRT-BSS) umożliwia ciągłe, bezinwazyjne monitorowanie zmian szerokości przestrzeni podpajęczynówkowej, które może być cennym narzędziem w ocenie zagrożenia obrzękiem mózgu. W rozprawie przedstawiono optyczny model rozchodzenia się promieniowania podczerwonego...
-
Musical Instrument Tagging Using Data Augmentation and Effective Noisy Data Processing
PublicationDeveloping signal processing methods to extract information automatically has potential in several applications, for example searching for multimedia based on its audio content, making context-aware mobile applications (e.g., tuning apps), or pre-processing for an automatic mixing system. However, the last-mentioned application needs a significant amount of research to reliably recognize real musical instruments in recordings....
-
Why the solvation water around proteins is more dense than bulk water
PublicationThe main aim of this work is to propose a rational explanation of commonly observed phenomenon of increasing water density within solvation shell of proteins. We have observed that geometry of the water-water hydrogen bond network within solvation layer differs from the one in bulk water and it is the effect of interactions of water molecules with protein surface. Altered geometry of the network reflects changes in the structure...
-
Why the Solvation Water around Proteins Is More Dense than Bulk Water
PublicationThe main aim of this work is to propose a rational explanation of the commonly observed phenomenon of increasing water density within solvation shell of proteins. We have observed that the geometry of the water–water hydrogen bond network within solvation layer differs from the one in bulk water, and it is the result of interactions of water molecules with protein surface. Altered geometry of the network reflects changes in the...
-
A new multi-process collaborative architecture for time series classification
PublicationTime series classification (TSC) is the problem of categorizing time series data by using machine learning techniques. Its applications vary from cybersecurity and health care to remote sensing and human activity recognition. In this paper, we propose a novel multi-process collaborative architecture for TSC. The propositioned method amalgamates multi-head convolutional neural networks and capsule mechanism. In addition to the discovery...
-
Performance of the AMOEBA Water Model in the Vicinity of QM Solutes: A Diagnosis Using Energy Decomposition Analysis
PublicationThe importance of incorporating solvent polarization effects into the modeling of solvation processes has been well-recognized, and therefore a new generation of hybrid quantum mechanics/molecular mechanics (QM/MM) approaches that accounts for this effect is desirable. We present a fully self-consistent, mutually polarizable QM/MM scheme using the AMOEBA force field, in which the total energy of the system is variationally minimized...
-
Determination of carbonyl compounds in distilled alcoholic beverages using gas chromatography and head-space solid phase microextraction. Oznaczanie związków karbonylowych w napojach alkoholowych z użyciem chromatografii gazowej i mikroekstrakcji do fazy stacjonarnej z fazy nadpowierzchniowej
PublicationW pracy przedstawiono badania nad opracowaniem procedury oznaczania związków karbonylowych z użyciem mikroekstrakcji do fazy stacjonarnej w wersji analizy fazy nadpowierzchniowej (HS-SPME), chromatografii gazowej z detekcją wychwytu elektronów(GC-ECD) oraz derywatyzacji pentafluorobenzylohydroksyloaminą (PFBHA). Opisano wpływ parametrów: temperatury, mieszania, czasu ekspozycji włókna, dodatku soli, stężenia alkoholu. Opracowaną...
-
Influence of Thermal Imagery Resolution on Accuracy of Deep Learning based Face Recognition
PublicationHuman-system interactions frequently require a retrieval of the key context information about the user and the environment. Image processing techniques have been widely applied in this area, providing details about recognized objects, people and actions. Considering remote diagnostics solutions, e.g. non-contact vital signs estimation and smart home monitoring systems that utilize person’s identity, security is a very important factor....
-
Updating the Coupling Algorithm between HYDRUS and MODFLOW in the HYDRUS Package for MODFLOW
PublicationThe HYDRUS-based flow package for MODFLOW (the HPM or the HYDRUS package) is an existing unsaturated zone flow package for MODFLOW. In MODFLOW with the HPM, the groundwater modeling domain is discretized into regular grids that can be combined into multiple zones based on similarities in soil hydrology, topographical characteristics, and the depth to the groundwater. Each of these zones is assigned one unsaturated soil profile...
-
A vector-enzymatic DNA fragment amplification-expression technology for construction of artificial, concatemeric DNA, RNA and proteins for novel biomaterials, biomedical and industrial applications
PublicationA DNA fragment amplification/expression technology for the production of new generation biomaterials for scientific, industrial and biomedical applications is described. The technology enables the formation of artificial Open Reading Frames (ORFs) encoding concatemeric RNAs and proteins. It recruits the Type IIS SapI restriction endonuclease (REase) for an assembling of DNA fragments in an ordered head-to-tail-orientation. The...
-
Reliable computationally-efficient behavioral modeling of microwave passives using deep learning surrogates in confined domains
PublicationThe importance of surrogate modeling techniques has been steadily growing over the recent years in high-frequency electronics, including microwave engineering. Fast metamodels are employed to speedup design processes, especially those conducted at the level of full-wave electromagnetic (EM) simulations. The surrogates enable massive system evaluations at nearly EM accuracy and negligible costs, which is invaluable in parameter...
-
Michał Bernard Pietrzak dr hab.
PeopleMichal Pietrzak is head of the Department of Statistics and Econometrics at the Faculty of Economics and Management, Gdańsk University of Technology, and Deputy Editor-in-Chief for Statistical Reviewing of the journals: Oeconomia Copernicana and Equilibrium. Quarterly Journal of Economics and Economic Policy. Until October 2021, he worked as an associate professor at the Faculty of Economic Sciences and Management, Nicolaus...
-
Adolfo Poma
PeopleI am the group leader of the computational modelling of biomolecules divison at the institute of Fundamental Technological Research Polish Academy of Sciences in Poland. My group was hosted between 2021-2022 by International Centre for Research on Innovative Bio-based Materials (ICRI-BioM). In 2008, I got a Master degree in computational physics from the State University of Campinas, Brazil. Then I moved to Germany and under the...
-
Przykłady realizacji i interpretacji wyników sondażowych pomiarów terenowych w czynnych systemach wodociągowych
PublicationW pracy przedstawiono przebieg realizacji i rezultaty sondażowych pomiarów terenowych w trzech układach dystrybucji wody o zróżnicowanym przewymiarowaniu sieci wodociągowej. Pomiary przeprowadzono w dążeniu do identyfikacji właściwości (cech) strukturalnych i funkcjonalnych układów po wieloletniej ich eksploatacji. Ustalenia te determinują opracowanie programu realizacji pomiarów dla potrzeb tarowania komputerowego modelu przepływu...
-
Przykłady realizacji i interpretacji wyników sondażowych pomiarów terenowych w czynnych systemach dystrybucji wody
PublicationW pracy przedstawiono przebieg realizacji i rezultaty sondażowych pomiarów terenowych w trzech układach dystrybucji wody o zróżnicowanym przewymiarowaniu sieci wodociągowej. Pomiary przeprowadzono w dążeniu do identyfikacji właściwości (cech) strukturalnych i funkcjonalnych układów po wieloletniej ich eksploatacji. Ustalenia te determinują opracowanie programu realizacji pomiarów dla potrzeb tarowania komputerowego modelu przepływu...
-
Shear Cap Size Selection Method Based on Parametric Analysis of ACI-318 Code and Eurocode 2 Standard
PublicationThe scope of the paper is to propose a method for determining the size of shear caps in a slab–column-connections-reinforced concrete structure. Usually, shear heads are used to enhance slab–column connection, especially when the transverse reinforcement does not give the required punching shear load capacity. The dimensions of the shear head should provide the punching shear resistance of the connection inside and outside the...
-
Impact of climate change on groundwater recharge in shallow young glacial aquifers in northern Poland
PublicationWe investigated the influence of climate change in the period 1951–2020 on shallow aquifers in the Brda and Wda outwash plains (Pomeranian Region, Northern Poland). There was a significant temperature rise (0.3 °C/10 years), which accelerated after 1980 (0.66 °C/10 years). Precipitation became increasingly irregular – extremely rainy years occurred right after or before extremely dry years, and intensive rainfall events became...
-
Adaptive acoustic crosstalk cancellation in mobile computer device
PublicationThe cancellation of acoustic crosstalk is employed to enhance the stereo image in mobile listening conditions. A practical setup employing a mobile computer is employed. The adaptation of the crosstalk cancellation filter to the position of the listener's head is featured. The measurement evaluating the possibility of practical application of the method are described. The head and torso simulator was used for measurements. The...
-
FIBRE-OPTIC SENSOR FOR SIMULTANEOUS MEASUREMENT OF THICKNESSAND REFRACTIVE INDEX OF LIQUID LAYERS
PublicationIn this paper, we present a fibre-optic sensor for simultaneous measurement of refractive index and thickness of liquid layers. We designed an experimental low-coherence setup with two broadband light sources and an extrinsic fibre-optic Fabry–Pérot interferometer acting as the sensing head. We examined how the refractive index of a liquid film and its thickness affect spectrum at the output of a fibre-optic interferometer. We...
-
Mariusz Figurski prof. dr hab. inż.
PeopleMariusz Józef Figurski (born 27 April 1964 in Łasinie, Poland) - Polish geodesist, professor of technical sciences, professor at the Gdańsk University of Technology. Early life and education He passed the matriculation examination in 1983 after he had finished Jan III Sobieski High school in Grudziądz. He graduated the Military University of Technology on an individual mode at the Faculty of Electromechanics and Civil Engineering...
-
Ensembling noisy segmentation masks of blurred sperm images
PublicationBackground: Sperm tail morphology and motility have been demonstrated to be important factors in determining sperm quality for in vitro fertilization. However, many existing computer-aided sperm analysis systems leave the sperm tail out of the analysis, as detecting a few tail pixels is challenging. Moreover, some publicly available datasets for classifying morphological defects contain images limited only to the sperm head. This...
-
Cardiovascular data analysis using electronic wearable eyeglasses-preliminary study
Publicationhe paper presents an alternative approach to the monitoring of the cardiovascular system. The study depicts configurations of the utilized system and preliminary results of electrical and mechanical parameters of the cardiac system which can be measured using a head-worn device.
-
Magdalena Szuflita-Żurawska
PeopleHead of the Scientific and Technical Information Services at the Gdansk University of Technology Library and the Leader of the Open Science Competence Center. She is also a Plenipotentiary of the Rector of the Gdańsk University of Technology for open science. She is a PhD Candidate. Her main areas of research and interests include research productivity, motivation, management of HEs, Open Access, Open Research Data, information...
-
Vibrational Sum-Frequency Generation Activity of a 2,4-Dinitrophenyl Phospholipid Hybrid Bilayer: Retrieving Orientational Parameters from a DFT Analysis of Experimental Data
PublicationThe vibrational nonlinear activity of films of 2,4-dinitrophenyl phospholipid (DNP) at the solid interface is measured by sum-frequency generation spectroscopy (SFG). Hybrid bilayers are formed by a LangmuirSchaefer approach in which the lipid layer is physisorbed on top of a self-assembled monolayer of dodecanethiol on Pt with the polar heads pointing out from the surface. The SFG response is investigated in two vibrational frequency...
-
Sperm segmentation and abnormalities detection during the ICSI procedure using machine learning algorithms
Publication(1) About 15-20% of couples struggle with the problem of infertility. 30 to 40% of these cases are caused by abnormalities in the structure and motility of sperm. Sometimes the only possibility for such people is to use the procedure of artificial insemination. CASA systems are used to increase the efficiency of this procedure by selecting the appropriate sperm cell. (2) This paper presents an approach to the sperm classification...
-
A system for acoustic field measurement employing cartesian robot
PublicationA system setup for measurements of acoustic field, together with the results of 3D visualisations of acoustic energy flow are presented in the paper. Spatial sampling of the field is performed by a Cartesian robot. Automatization of the measurement process is achieved with the use of a specialized control system. The method is based on measuring the sound pressure (scalar) and particle velocity (vector) quantities. The aim of the...
-
An extension to the FEEDB Multimodal Database of Facial Expressions and Emotions
PublicationFEEDB is a multimodal database that contains recordings of people expressing different emotions, captured by using a Microsoft Kinect sensor. Data were originally provided in the device’s proprietary format (XED), requiring both the Microsoft Kinect Studio application and a Kinect sensor attached to the system to use the files. In this paper, we present an extension of the database. For a selection of recordings, we also provide...
-
The Effect of Sterols on Amphotericin B Self-Aggregation in a Lipid Bilayer as Revealed by Free Energy Simulations
PublicationAmphotericin B (AmB) is an effective but toxic antifungal drug, known to increase the permeability of the cell membrane, presumably by assembling into transmembrane pores in a sterol-dependent manner. The aggregation of AmB molecules in a phospholipid bilayer is, thus, crucial for the drug’s activity. To provide an insight into the molecular nature of this process, here, we report an atomistic molecular dynamics simulation study...
-
Marek Zienkiewicz dr inż.
PeopleDoctor engineer Marek Hubert Zienkiewicz is a graduate of the Faculty of Geodesy, Spatial Engineering and Construction at the University of Warmia and Mazury in Olsztyn. During his engineering, master's and doctoral studies he developed his scientific interests under the supervision of representatives of the Olsztyn geodetic compensatory calculus school. In 2011, he obtained the title of Master of Science in Geodesy and Cartography,...
-
Measurements of acoustic crosstalk cancellation efficiency in mobile listening conditions
PublicationThe cancellation of acoustic crosstalk is employed to enhance the stereo image in mobile listening conditions. The implementation of the crosstalk cancellation algorithm in Matlab is introduced. The measurement signals and equipment are described. A practical setup employing a mobile computer and a head and torso simulator is employed. The results of the measurements provided conclusions regarding the employment of acoustic crosstalk...
-
Influences of grain shape and size distribution on permeability
PublicationThe present study investigates the effects of shape and size distributions of grains on the coefficient of permeability (k). A series of constant head permeability tests were performed to characterize the coefficient of permeability. Three particle size ranges (4.75- 0.075, 1.18- 0.075 and 0.300-0.075 mm) of two different sands (Narli Sand, Crushed Stone Sand) having different shapes were tested in a constant head permeability...
-
ON ESTIMATION OF OCCUPANT SAFETY IN VEHICULAR CRASHES INTO ROADSIDE OBSTACLES USING NON-LINEAR DYNAMIC ANALYSIS
PublicationThe article describes a comparison of two general methods of occupants safety estimation based on a numerical examples. The so-called direct method is mainly based on the Head Injury Criterion of a crash test dummy in a vehicle with passive safety system while the indirect method uses a European standards approach to estimate impact severity level. Numerical simulations in LS-DYNA have been conducted.
-
The evaluation of the vibration measurement usability of electronic indicator lemag "premet C"
PublicationThe measuring possibilities of modern compression and combustion pressure analyzers are extended with additional functions. One of them is parallel to the pressure measurement, the measurement of vibrations in the region of the cylinder head. The paper presents a general assessment of the vibration measurement function of the electronic indicator LEMAG "PREMET C". This feature is very rarely offered by manufacturers of these devices....
-
Effect of temperature change on refractive index of an egg white and yolk: a preliminary study
PublicationIn this article, the refractive index of an egg white and yolk depending on temperature in range 30 - 47 °C over 1550 nm was determined. The measurement head was constructed as fiber optic Fabry-Perot interferometer with interference between polished fiber end-face and aluminum weighing dish. The measurement setup has been made of an optical spectrum analyzer, a superluminescent diode with a central wevelength of 1550 nm, 2:1 fiber...
-
A Simulative Comparison of Ship Domains and Their Polygonal Approximations
PublicationThe paper investigates the impact of a precise ship domain shape on the size of collision avoidance manoeuvres. The considered collision avoidance manoeuvres include both course and speed alterations. Various ship domains are compared with their polygonal approximations, which vary in the number of points of a domain contour and placement of these points. The best of all considered approximations is determined in the course of...
-
Impact of steel grade on a ship colliding with an offshore wind turbine monopile supporting structure
PublicationOffshore wind power is experiencing rapid development around the world. The number of installations and their size is growing. Thousands of monopile support structures with diameters of 10 m and weights of 2000 tons will be installed in the coming years. Offshore wind power installations, often located close to the shore and shipping routes, pose a new challenge to ship safety. The study analyses the damages from an accidental...
-
Drill holes decrease cancellous bone strength: A comparative study of 33 paired osteoporotic human and 9 paired artificial bone samples
PublicationThis study was designed to compare compressive strength of cancellous bone retrieved from the femoral head in a specimen with and without guide wire hole, with comparison to synthetic bone samples. Femoral heads retrieved from 33 patients who sustained femoral neck fractures and underwent hip arthroplasty were cut into cuboids leaving two matching samples from the same femoral head. Similar samples were prepared from synthetic femurs....
-
Mechanical characterization of a gravel column in a calibration chamber operating as a triaxial cell
PublicationA series of tests considering the behavior of gravel columns was performed. A segment of column with a height of 1 m and a diameter of 0.53 m was modelled in a calibration chamber used as a triaxial cell at three different lateral stress applied. The vertical load transferred on the column head was simulated with steady increase of water pressures in the upper and lower membranes. During the loading the volumetric changes in the...
-
Generalised heart rate statistics reveal neurally mediated homeostasis transients
PublicationDistributions of accelerations and decelerations, obtained from increments of heart rate recorded during a head-up tilt table (HUTT) test provide short-term characterization of the complex cardiovascular response to a rapid controlled dysregulation of homeostasis. A generalised statistic is proposed for evaluating the neural reflexes responsible for restoring the homeostatic dynamics. An evaluation of the effects on heart rate...
-
Dariusz Dąbrowski dr hab. inż.
PeopleDariusz Dąbrowski graduated from the Faculty of Shipbuilding at Gdańsk University of Technology and in 1987 began working at the university as an assistant in the Department of Shipbuilding Industry Organization within the then Institute of Organization and Design of Production Systems. In 1990, he went on a TEMPUS scholarship from the EU and spent 14 months at the University of Sheffield, where he participated in the Master of...
-
9-(Trichloroacetylimino)acridine monohydrate
PublicationThe title compound, alternatively called N-acridin-9(10H)-ylidene-2,2,2-trichloroacetamide monohydrate, C15H9Cl3N2O·H2O, crystallizes in space group P21/c with Z = 4. The acridine moieties are arranged in layers, tilted at an angle of 15.20 (4)° relative to the ac plane, while adjacent molecules pack in a head-to-tail manner. Acridine and water molecules form columns along the b axis held in place by a network of hydrogen...
-
Wiktoria Wojnicz dr hab. inż.
PeopleDSc in Mechanics (in the field of Biomechanics) - Lodz Univeristy of Technology, 2019 PhD in Mechanics (in the field of Biomechanics) - Lodz Univeristy of Technology, 2009 (with distinction) List of papers (2009 - ) Wojnicz W., Wittbrodt E., Analysis of muscles' behaviour. Part I. The computational model of muscle. Acta of Bioengineering and Biomechanics, Vol. 11, No.4, 2009, p. 15-21 Wojnicz W., Wittbrodt E., Analysis of...
-
Objectivization of audio-video correlation assessment experiments
PublicationThe purpose of this paper is to present a new method of conducting an audio-visual correlation analysis employing a head-motion-free gaze tracking system. First, a review of related works in the domain of sound and vision correlation is presented. Then assumptions concerning audio-visual scene creation are shortly described. The objectivization process of carrying out correlation tests employing gaze-tracking system is outlined....
-
Impact of temperature on optical sensing in biology based on investigation of SARS‐CoV ‐2
PublicationIn this paper, we present an investigation of the influence of the temperature on the sensing of biological samples. We used biofunctionalized microsphere-based fiber-optic sensor to detect immunoglobulin G attached to the sensor head at temperatures relevant in biological research: 5°C, 25°C, and 55°C. The construction of the sensor allowed us to perform measurements in the small amount of solution. The results of our experiment...
-
Examining Acoustic Emission of Engineered Ultrasound Loudspeakers
PublicationMeasurement results of the sound emitted from an ultrasound custom-made system with high spatial directivity are presented. The proposed system is using modulated ultrasound waves which demodulate in nonlinear medium resulting in audible sound. The system is aimed at enhancing the users’ personal audio space, therefore the measurements are performed using the Head and Torso Simulator which provides the realistic reproduction of...
-
THE DETERMINATION OF ABRASION RESISTANCE OF SELECTED BIOMATERIALS FOR THE FRICTION PAIRS IN THE HIP JOINT ENDOPROSTHESIS
PublicationThe key requirement for the modern endoprosthesis is high durability of the friction components, which results in long and trouble-free operation in the human body. The durability of currently used endoprosthesis is often limited by tribological wear processes of friction components (e.g. between the head and the acetabular component in a hip joint endoprosthesis) [8, 19, 23, 24]. In order to compare the tribological wear, tribological...
-
Doped Nanocrystalline Diamond Films as Reflective Layers for Fiber-Optic Sensors of Refractive Index of Liquids
PublicationThis paper reports the application of doped nanocrystalline diamond (NCD) films—nitrogen-doped NCD and boron-doped NCD—as reflective surfaces in an interferometric sensor of refractive index dedicated to the measurements of liquids. The sensor is constructed as a Fabry–Pérot interferometer, working in the reflective mode. The diamond films were deposited on silicon substrates by a microwave plasma enhanced chemical vapor deposition...
-
Diamond Structures for Tuning of the Finesse Coefficient of Photonic Devices
PublicationFinesse coefficient is one of the most important parameters describing the properties of a resonant cavity. In this research, a mathematical investigation of the application of diamond structures in a fiber-optic Fabry–Perot measurement head to assess their impact on the finesse coefficient is proposed. We present modeled transmission functions of cavities utilizing a nitrogen-doped diamond, a boron-doped diamond, nanocrystalline...