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A Data Driven Model for Predicting RNA-Protein Interactions based on Gradient Boosting Machine
PublikacjaRNA protein interactions (RPI) play a pivotal role in the regulation of various biological processes. Experimental validation of RPI has been time-consuming, paving the way for computational prediction methods. The major limiting factor of these methods has been the accuracy and confidence of the predictions, and our in-house experiments show that they fail to accurately predict RPI involving short RNA sequences such as TERRA RNA....
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Physical crosslinking of hyaluronic acid in the presence of phospholipids in an aqueous nano-environment
PublikacjaHyaluronic acid and phospholipids are two components in the synovial joint cavity that contribute to joint lubrication synergistically. Molecular dynamics simulations were performed and hydrogen bonds in hyaluronic acid were analyzed to identify specific sites that are responsible for its physical cross-linking. Two molecular masses of hyaluronic acid, 10 kDa and 160 kDa, were considered. We use molecular dynamics simulations and...
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Multifrequency Nanoscale Impedance Microscopy (m-NIM): A novel approach towards detection of selective and subtle modifications on the surface of polycrystalline boron-doped diamond electrodes
PublikacjaIn this paper, we describe the modification of Nanoscale Impedance Microscopy (NIM), namely, a combination of contact-mode atomic force microscopy with local impedance measurements. The postulated approach is based on the application of multifrequency voltage perturbation instead of standard frequency-by-frequency analysis, which among others offers more time-efficient and accurate determination of the resultant impedance spectra...
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Mechanical Performance and Environmental Assessment of Sustainable Concrete Reinforced with Recycled End-of-Life Tyre Fibres
PublikacjaThe presented research’s main objective was to develop the solution to the global problem of using steel waste obtained during rubber recovery during the tire recycling. A detailed comparative analysis of mechanical and physical features of the concrete composite with the addition of recycled steel fibres (RSF) in relation to the steel fibre concrete commonly used for industrial floors was conducted. A study was carried out using...
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Student Perspectives on the 2017 ESA Concurrent Engineering Challenge
PublikacjaIn September 2017, the first ESA Academy’s Concurrent Engineering Challenge (CEC) was held, giving 88 Master’s and PhD-level students from twelve ESA Member and Associate States a powerful platform to experience system engineering in an intense, fast paced, and real-world environment. Within four days, teams of physics and engineering students in Concurrent Design Facilities (CDF) located in Politecnico di Torino, Universidad Polit´ecnica...
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Assessing Highway Travel Time Reliability using Probe Vehicle Data
PublikacjaProbe vehicle data (also known as “floating car data”) can be used to analyze travel time reliability of an existing road corridor in order to determine where, when, and how often traffic congestion occurs at particular road segments. The aim of the study is to find the best reliability performance measures for assessing congestion frequency and severity based on probe data. Pilot surveys conducted on A2 motorway in Poland confirm...
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Using Isolation Forest and Alternative Data Products to Overcome Ground Truth Data Scarcity for Improved Deep Learning-based Agricultural Land Use Classification Models
PublikacjaHigh-quality labelled datasets represent a cornerstone in the development of deep learning models for land use classification. The high cost of data collection, the inherent errors introduced during data mapping efforts, the lack of local knowledge, and the spatial variability of the data hinder the development of accurate and spatially-transferable deep learning models in the context of agriculture. In this paper, we investigate...
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Personalized prediction of the secondary oocytes number after ovarian stimulation: A machine learning model based on clinical and genetic data
PublikacjaControlled ovarian stimulation is tailored to the patient based on clinical parameters but estimating the number of retrieved metaphase II (MII) oocytes is a challenge. Here, we have developed a model that takes advantage of the patient’s genetic and clinical characteristics simultaneously for predicting the stimulation outcome. Sequence variants in reproduction-related genes identified by next-generation sequencing were matched...
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Surveillance camera tracking of GEO positioned objects
PublikacjaRozdział opisuje system sterowania kamerami ruchomymi PTZ realizujący śledzenie poruszającego się obiektu o znanej pozycji GPS. Przedstawione są idea systemu oraz możliwości jego wykorzystania. Opisane są: procedura kalibracji pola widzenia kamery i sposób powiązania z danymi o lokalizacji, procedura predykcji ruchu w celu kompensacji opóźnień czasowych. Omówiony jest zaimplementowany system modułowy, w którego skład wchodzą: terminale...
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Supercomputing Grid-Based Services for Hearing Protection and Acoustical Urban Planning, Research and Education
PublikacjaSpecific computational environments, so-called domain grids, are developed within the PLGrid Plus project in order to prepare specialized IT solutions, i.e., dedicated software implementations and hardware (infrastructure adaptation), suited for particular research group demands. One of the PLGrid Plus domain grids, presented in this paper, is Acoustics. The article describes in detail two kinds of the acoustic domain services....
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Analiza wezbrania rzeki Kaczej w Gdyni po opadzie z 14 lipca 2016 roku
PublikacjaW połowie lipca 2016 r. w Trójmieście, zanotowano opad atmosferyczny o sumie przekraczającej 150 mm. Opadom deszczu od godzin popołudniowych dnia 14 lipca do godzin rannych 15 lipca towarzyszył okresami bardzo silny i gwałtowny wiatr początkowo z kierunku północno-wschodniego następnie z kierunku północno-zachodniego. Opisana sytuacja hydro-meteorologiczna spowodowała znaczne wezbrania w rzekach i potokach rejonu Zatoki Gdańskiej,...
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Towards azeotropic MeOH-MTBE separation using pervaporation chitosan-based deep eutectic solvent membranes
PublikacjaDeep eutectic solvents (DESs) are a new class of solvents that can offset some of the major drawbacks of common solvents and ionic liquids. When dealing with the preparation of dense membranes, the use of DESs is still challenging due to their low compatibility with the polymer phase. In this research, a novel L-proline:sulfolane (molar ratio 1:2) DES was synthesized and used for the preparation of more sustainable bio-based membranes...
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Post processing and selecting data obtain with parametric sub-bottom profiler SES-2000 Standard during sounding the Gulf of Gdansk
PublikacjaThe main goal of the paper is to describe the results of sounding the Gulf of Gdansk seabed using a parametric sub-bottom profiler SES-2000 Standard. Quality of obtained during trials data depends inter alia on proper location of antenna to reduce influence of pitch, roll, heave and ship noise (bubbles from propeller and a hull flow, vibration from main engine and peripheral devices). Furthermore calibration of complementary units...
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Collision-Free Network Exploration
PublikacjaA set of mobile agents is placed at different nodes of a n-node network. The agents synchronously move along the network edges in a collision-free way, i.e., in no round may two agents occupy the same node. In each round, an agent may choose to stay at its currently occupied node or to move to one of its neighbors. An agent has no knowledge of the number and initial positions of other agents. We are looking for the shortest possible...
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Customization of UWB 3D-RTLS Based on the New Uncertainty Model of the AoA Ranging Technique
PublikacjaThe increased potential and effectiveness of Real-time Locating Systems (RTLSs) substantially influence their application spectrum. They are widely used, inter alia, in the industrial sector, healthcare, home care, and in logistic and security applications. The research aims to develop an analytical method to customize UWB-based RTLS, in order to improve their localization performance in terms of accuracy and precision. The analytical...
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Pojazdy autonomiczne na przykładzie samojeżdżącego samochodu Google`a
PublikacjaPod pojęciem pojazdu autonomicznego rozumiemy pojazdy zdolne do poruszania się bez udziału człowieka. Nie jest to nowa koncepcja, powstanie samej idei datuje się na lata 20 XX wieku, a początki wprowadzania jej w życie na lata 80. Obecnie istnieją głównie w formie prototypów będących w trakcie testów. Do jednych z najbardziej obiecujących zaliczyć możemy pojazd firmy Google. Pojazdy te zdolne są do wykrywania przeszkód znajdujących...
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Developing the Urban Blue-Green Infrastructure as a Tool for Urban Air Quality Management
PublikacjaUrban structure is an important factor that shapes the process of urban ventilation and pollution dispersion. With proper planning of the urban spatial layout, city breathability can be effectively regulated, contributing to urban air quality improvement. This paper investigates the development and current management of urban systems of green and open spaces in four Polish cities: Gda ´nsk, Warsaw, Pozna ´n and Wrocław, with a...
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Anisotropy and compaction gradient assessment on rammed earth specimens through sonic tomography approach
PublikacjaRammed earth is a traditional construction technique that has recently gained attention because of its benefits from an ecological perspective. The conservation of the existing valuable cultural heritage sites and the quality control of new constructions built with this material require the development and application of practical inspection techniques. This paper explores the application of sonic tests and sonic tomography as...
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The impact of global value chains on wages, employment, and productivity: a survey of theoretical approaches
PublikacjaThis study presents a systematic literature review to provide a collection of theories explaining the impact of global value chains (GVCs) on labour market outcomes. Due to the complex nature of GVCs and the interconnectedness of wages, employment, and productivity, many direct and indirect effects are at play. To ensure a transparent and systematic flow of the review process, I follow the PRISMA guide. Eventually, 36 records out...
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Publicly available lecture webcasts - e-learning or promotion tool? case study
PublikacjaThis paper aims to show how universities interact with Internet users by webcasting selected courses. Paper has exploratory case-study character, presenting example of Berkeley Webcast initiative of University of California, Berkeley, webcasting undergraduate courses and on-campus events. On the base of short introduction to webcasting usage as an e-learning and promotional tool, the analysis of 3 purposely chosen different courses...
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Obrazy akustyczne dna morskiego w wybranych akwenach Bałtyku
PublikacjaMetody akustyczne obserwacji obszarów podwodnych mórz i oceanów stosowane są od początku XX wieku. Początkowo były to echosondy nawigacyjne najczęściej składające się z pojedynczych przetworników. Następnie zaczęto stosować sonary do wykrywania obiektów stanowiących przeszkody nawigacyjne pod woda, które miały głównie zastosowanie w marynarce wojennej. W drugiej połowie XX wieku rozpoczęto konstruowanie urządzeń akustycznych, których...
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Segmentation Quality Refinement in Large-Scale Medical Image Dataset with Crowd-Sourced Annotations
PublikacjaDeployment of different techniques of deep learning including Convolutional Neural Networks (CNN) in image classification systems has accomplished outstanding results. However, the advantages and potential impact of such a system can be completely negated if it does not reach a target accuracy. To achieve high classification accuracy with low variance in medical image classification system, there is needed the large size of the...
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A Highly Selective Biosensor Based on Peptide Directly Derived from the HarmOBP7 Aldehyde Binding Site
PublikacjaThis paper presents the results of research on determining the optimal length of a peptide chain to eectively bind octanal molecules. Peptides that map the aldehyde binding site in HarmOBP7 were immobilized on piezoelectric transducers. Based on computational studies, four Odorant Binding Protein-derived Peptides (OBPPs) with dierent sequences were selected. Molecular modelling results of ligand docking with selected peptides were...
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METHODS OF TEACHING SPATIAL AND URBAN PLANNING AT GEODESY AND CARTOGRAPHY
PublikacjaSpatial and town planning is a complex process caused by the interaction between natural and social systems at different temporal and spatial scales. That is the reason, why it is difficult to introduce this subject to students studying disciplines other than spatial or urban planning. The main problem is to define goals, the scope and expected educational effects. The second step is to choose the appropriate teaching and assessment...
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GIS-based hydrodynamic modeling for urban flood mitigation in fast-growing regions: a case study of Erbil, Kurdistan Region of Iraq
PublikacjaFloods threaten urban infrastructure, especially in residential neighborhoods and fast-growing regions. Flood hydrodynamic modeling helps identify flood-prone locations and improve mitigation plans' resilience. Urban floods pose special issues due to changing land cover and a lack of raw data. Using a GIS-based modeling interface, input files for the hydrodynamic model were developed. The physical basin's properties were identified...
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Open-source software (OSS) and hardware (OSH) in UAVs
PublikacjaThe popularity of the Open Source Tool (OST) has expanded significantly. This is the case for Unmanned Aerial Vehicles (UAVs) based on open-source hardware (OSH) as well. Open-source software (OSS) and OSH can be applied in a wide range of applications and can improve several technologies. The chapter begins with an introduction to OSS depicting its rationale, description of fundamental differences between OSS and proprietary software...
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Retained features of embryonic metabolism in the adult MRL mouse
PublikacjaThe MRL mouse is an inbred laboratory strain that was derived by selective breeding in 1960 from the rapidly growing LG/J (Large) strain. MRL mice grow to nearly twice the size of other commonly used mouse strains, display uncommonly robust healing and regeneration properties, and express later onset autoimmune traits similar to Systemic Lupus Erythematosis. The regeneration trait (heal) in the MRL mouse maps to 14-20 quantitative...
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Ocena rzeczywistej wytrzymałości betonu na bazie monitoringu procesu dojrzewania i symulacji numerycznych
PublikacjaGłównym celem rozprawy jest opracowanie procedur badawczych i algorytmów numerycznych do wyznaczania rzeczywistej wytrzymałości betonu w konstrukcji wraz z ich implementacją w procesie budowalnym mostu typu extradosed. Zakres pracy obejmuje rozpoznanie metody dojrzałości, badania laboratoryjne betonów i zapraw, badania betonu zastosowanego do budowy przęsła mostu oraz obliczenia numeryczne rozkładu temperatury i wytrzymałości betonu...
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DUAL CONSTELLATION GPS/GALILEO MOBILE SYSTEM FOR IMPROVING NAVIGATION OF THE VISUALLY IMPAIRED IN AN URBAN AREA
PublikacjaIt is well known by users of Portable Navigation Device (PND) and other GPS-based devices that positioning suffers from (local) significant decreases of accuracy in partially obscured environments like urbanized areas, where buildings (especially high buildings), trees or terrain block large portions of the sky. In such areas, GPS receiver performance is usually deteriorated by the reduced number of currently available satellite...
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DESIGN OF THE DUAL CONSTELLATION GPS/GALILEO MOBILE DEVICE FOR IMPROVING NAVIGATION OF THE VISUALLY IMPAIRED IN AN URBAN AREA
PublikacjaIt is well known by users of Personal Navigation Device (PND) and other GPS-based devices that positioning suffers from (local) significant decreases of accuracy in partially obscured environments like urbanized areas, where buildings (especially high buildings), trees or terrain block large portions of the sky. In such areas, GPS receiver performance is usually deteriorated by the reduced number of currently available satellite...
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Modeling of TEC Variations Based on Signals from Near Zenith GNSS Satellite Observed by Dense Regional Network
PublikacjaCurrently the substantial successes in high-resolution ionospheric mapping is declared in many publications. Nevertheless, up to now there are no examples of dynamic visualization of TEC disturbances on regional scale with as high resolution as tropospheric models. Over the years, ionosphere has been modeling basing on the simple assumption, that it is a thin layer, which surrounds the Earth at some arbitrary height. However, the...
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Structural properties of hydration shell around various conformations of simple polypeptides
PublikacjaIn this paper we investigate structural properties of water within the solvation shell around the peptide core created by a well-defined conformation of polypeptide chain. The following secondary structures are investigated: linear (straight chain), and three helices PII (polyproline-like), 310, and α. We propose using the two-particle contribution to entropy as a rational measure of the water structural ordering within the solvation...
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The influence of the geographic positioning system error on the quality of ship magnetic signature reproduction based on measurements in sea conditions
PublikacjaIn previous studies, the authors performed the magnetic signature reconstruction of the marine ship Zodiak as part of the measurement campaign focused on recording magnetic data and the relative position of a ship during its passage over a magnetometer immersed on the testing ground. A high degree of representation of the magnetic signature was obtained. However, the recorded measurement data revealed new patterns of the multidipole model...
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Methodology of Selecting the Hadoop Ecosystem Configuration in Order to Improve the Performance of a Plagiarism Detection System
PublikacjaThe plagiarism detection problem involves finding patterns in unstructured text documents. Similarity of documents in this approach means that the documents contain some identical phrases with defined minimal length. The typical methods used to find similar documents in dig- ital libraries are not suitable for this task (plagiarism detection) because found documents may contain similar content and we have not any war- ranty that...
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Shore Construction Detection by Automotive Radar for the Needs of Autonomous Surface Vehicle Navigation
PublikacjaAutonomous surface vehicles (ASVs) are becoming more and more popular for performing hydrographic and navigational tasks. One of the key aspects of autonomous navigation is the need to avoid collisions with other objects, including shore structures. During a mission, an ASV should be able to automatically detect obstacles and perform suitable maneuvers. This situation also arises in near-coastal areas, where shore structures like...
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OKREŚLENIE STOPNIA DOSTĘPNOŚCI PRZESTRZENI PUBLICZNYCH NA KAMPUSIE POLITECHNIKI GDAŃSKIEJ W MYŚL TEORII PROJEKTOWANIA UNIWERSALNEGO Z UŻYCIEM METODOLOGII SPACE SYNTAX
PublikacjaW pracy podjęto próbę oceny efektywności dostępności przestrzeni publicznych na Kampusie Politechniki Gdańskiej oraz zbadania zagadnienia zgodność tych przestrzeni z założeniami projektowania uniwersalnego. Celem pracy jest zbadanie relacji między poszczególnymi obiektami dydaktycznymi, zidentyfikowanie głównych korytarzy dostępu oraz wykazanie czy przestrzeń publiczna Kampusu PG jest przestrzenią dostępną (spatial accesibillity)...
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Spectroscopic Optical Coherence Tomography for Thin Layer and Foil Measurements
PublikacjaThe main goal of this research was to assess if it is possible to evaluate the thickness of thin layers (both thin films on the surface and thin layers below the surface of the tested object) and foils using optical coherence tomography (OCT) for thickness assessment under the resolution of the standard commercially available OCT measurement system. In the proposed solution, light backscattered from the evaluated thin layer has...
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An application of blended and collaborative learning in spatial planning course
PublikacjaSpatial Planning is a master course for graduate students of Environmental Engineering. The course is based on assumptions that students’ future work will be connected with spatial planning, and spatial issues will have an influence on their everyday lives. To familiarize students with environmental issues in planning, the teams of students get an assignment to design an urban space, waterfront along a stream. The whole project...
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Visual Attention Distribution Based Assessment of User's Skill in Electronic Medical Record Navigation
PublikacjaCurrently, the most precise way of reflecting the skills level is an expert’s subjective assessment. In this paper we investigate the possibility of the use of eye tracking data for scalar quantitative and objective assessment of medical staff competency in EMR system navigation. According to the experiment conducted by Yarbus the observation process of particular features is associated with thinking. Moreover, eye tracking is...
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THE METHOD OF ANALYSIS OF DAMAGE REINFORCED CONCRETE BEAMS USING TERRESTRIAL LASER SCANNING
PublikacjaThe authors present an analysis of the possibility to assess deformations and mode of failure of R-C beams using terrestrial laser scanning. As part of experiments carried out at the Regional Laboratory of Construction (at Gdansk University of Technology), reinforced concrete beams were subjected to destruction by bending and by shear. The process of press impact on the reinforced concrete beam was recorded using terrestrial laser...
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Optimized Deep Learning Model for Flood Detection Using Satellite Images
PublikacjaThe increasing amount of rain produces a number of issues in Kerala, particularly in urban regions where the drainage system is frequently unable to handle a significant amount of water in such a short duration. Meanwhile, standard flood detection results are inaccurate for complex phenomena and cannot handle enormous quantities of data. In order to overcome those drawbacks and enhance the outcomes of conventional flood detection...
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Tworzenie miasta przyjaznego wszystkim
PublikacjaTworzenie miasta przyjaznego wszystkim, to zadnie, które jest prawdopodobnie celem wszystkich włodarzy miejskich. Czy nie jest tak, że każdy chciałby w takim mieście zamiesz-kać? Jednak zadanie to jest dość trudne, bo wymaga pogodzenia wielu aspektów życia mieszkańców. Obecnie do zagadnień środowiskowych związanych z szeroko rozumianą ekologią dochodzi zagadnienie dostosowania przestrzeni zgodnie z zasadami projektowania uniwersalnego....
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Deep convolutional neural network for predicting kidney tumour malignancy
PublikacjaPurpose: According to the statistics, up to 15-20% of removed solid kidney tumors turn out to be benign in postoperative histopathological examination, despite having been identified as malignant by a radiologist. The aim of the research was to limit the number of unnecessary nephrectomies of benign tumors. Methods or Background: We propose a machine-aided diagnostic system for kidney...
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Green porous benzamide-like nanomembranes for hazardous cations detection, separation, and concentration adjustment
PublikacjaGreen biomaterials play a crucial role in the diagnosis and treatment of diseases as well as health-related problem-solving. Typically, biocompatibility, biodegradability, and mechanical strength are requirements centered on biomaterial engineering. However, in-hospital therapeutics require an elaborated synthesis of hybrid and complex nanomaterials capable of mimicking cellular behavior. Accumulation of hazardous cations like...
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The added value of using the HEPA PAT for physical activity policy monitoring: a four-country comparison
PublikacjaBackground Public policy is increasingly recognized as an important component of physical activity promotion. This paper reports on the current status of physical activity policy development and implementation in four European countries based on the Health-Enhancing Physical Activity Policy Audit Tool (HEPA PAT) developed by WHO. It compares the findings to previous studies and discusses the general utility of this tool and its...
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Multi-agent graph searching and exploration algorithms
PublikacjaA team of mobile entities, which we refer to as agents or searchers interchangeably, starting from homebases needs to complete a given task in a graph.The goal is to build a strategy, which allows agents to accomplish their task. We analyze strategies for their effectiveness (e.g., the number of used agents, the total number of performed moves by the agents or the completion time).Currently, the fields of on-line (i.e., agents...
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Microstructure and mechanical properties of a dissimilar metal welded joint of Inconel 617 and P92 steel with Inconel 82 buttering layer for AUSC boiler application
PublikacjaThe application of the novel dissimilar metal welded (DMW) joint, utilizing Inconel 617 and P92 steel, was showcased in the advanced ultra-supercritical (AUSC) boiler. The work has been performed to investigate the effect of Inconel 82 (ERNiCr-3) buttering layer on microstructure and mechanical properties (high-temperature tensile strength, impact strength and microhardness) of gas tungsten arc welded (GTAW) dissimilar joint between...
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Non-Newtonian Mathematics Instead of Non-Newtonian Physics: Dark Matter and Dark Energy from a Mismatch of Arithmetics
PublikacjaNewtonian physics is based on Newtonian calculus applied to Newtonian dynamics. New paradigms such as ‘modified Newtonian dynamics’ (MOND) change the dynamics, but do not alter the calculus. However, calculus is dependent on arithmetic, that is the ways we add and multiply numbers. For example, in special relativity we add and subtract velocities by means of addition β1⊕β2=tanh(tanh−1(β1)+tanh−1(β2)), although multiplication β1⊙β2=tanh(tanh−1(β1)⋅tanh−1(β2)),...
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Algorytmy analizy i przetwarzania danych z sonarów wielowiązkowych w rozproszonych systemach GIS
PublikacjaTelemonitoring morski oraz szeroko rozumiane badania morza są ważnym elementem aktywności człowieka w sferze badań, nauki oraz gospodarki. Prowadzenie działań związanych z tworzeniem map dna, inspekcją nadbrzeży, umocnień, badaniem fauny morskiej pozwala zrozumieć procesy zachodzące w środowisku morskim oraz przyczynia się do rozwoju wielu gałęzi gospodarki takich jak transport morski, bezpieczeństwo, ochrona portów i inne. W ramach...
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Ocena oddziaływania na krajobraz elektrowni węglowej pod Pelpinem
PublikacjaPrzedmiotem oceny oddziaływania na krajobraz była planowana elektrownia węglowa w obrębie Rajkowy w gminie Pelplin. Ocenie podlegał jeden wariant elektrowni na tle innych wariantów. Dla celów oceny adaptowano metodę badań, opracowaną i zastosowaną przez A. Sas-Bojarską dla oceny oddziaływania na krajobraz obwodnicy Augustowa. W jej ramach przeprowadzono szereg kroków:1. zebranie materiałów wyjściowych (materiały archiwalne dotyczące...