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Explicit solvent repulsive scaling replica exchange molecular dynamics ( RS‐REMD ) in molecular modeling of protein‐glycosaminoglycan complexes
PublikacjaGlycosaminoglcyans (GAGs), linear anionic periodic polysaccharides, are crucial for many biologically relevant functions in the extracellular matrix. By interacting with proteins GAGs mediate processes such as cancer development, cell proliferation and the onset of neurodegenerative diseases. Despite this eminent importance of GAGs, they still represent a limited focus for the computational community in comparison to other classes...
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Pursuing the Deep-Learning-Based Classification of Exposed and Imagined Colors from EEG
PublikacjaEEG-based brain-computer interfaces are systems aiming to integrate disabled people into their environments. Nevertheless, their control could not be intuitive or depend on an active external stimulator to generate the responses for interacting with it. Targeting the second issue, a novel paradigm is explored in this paper, which depends on a passive stimulus by measuring the EEG responses of a subject to the primary colors (red,...
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An isogeometric finite element formulation for frictionless contact of Cosserat rods with unconstrained directors
PublikacjaThis paper presents an isogeometric finite element formulation for nonlinear beams with impenetrability constraints, based on the kinematics of Cosserat rods with unconstrained directors. The beam cross-sectional deformation is represented by director vectors of an arbitrary order. For the frictionless lateral beam-to-beam contact, a surface-to-surface contact algorithm combined with an active set strategy and a penalty method...
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Low-Cost Behavioral Modeling of Antennas by Dimensionality Reduction and Domain Confinement
PublikacjaBehavioral modeling has been rising in importance in modern antenna design. It is primarily employed to diminish the computational cost of procedures involving massive full-wave electromagnetic (EM) simulations. Cheaper alternative offer surrogate models, yet, setting up data-driven surrogates is impeded by, among others, the curse of dimensionality. This article introduces a novel approach to reduced-cost surrogate modeling of...
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LOS and NLOS identification in real indoor environment using deep learning approach
PublikacjaVisibility conditions between antennas, i.e. Line-of-Sight (LOS) and Non-Line-of-Sight (NLOS) can be crucial in the context of indoor localization, for which detecting the NLOS condition and further correcting constant position estimation errors or allocating resources can reduce the negative influence of multipath propagation on wireless communication and positioning. In this paper a deep learning (DL) model to classify LOS/NLOS...
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FEM and experimental investigations of concrete temperature field in the massive stemwall of the bridge abutment
PublikacjaThe paper deals with the prediction of early-age concrete temperature of cast-in-place stemwall of the bridge abutment. The considered object is an arch bridge located in Gda´nsk. In the case of massive structures, it is particularly important to not exceed the temperature difference between the core and the concrete surface. Too high temperature gradient generates an increase in thermal stresses, what could be the reason of exceeding...
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The Development of a Combined Method to Quickly Assess Ship Speed and Fuel Consumption at Different Powertrain Load and Sea Conditions
PublikacjaDecision support systems (DSS) recently have been increasingly in use during ships operation. They require realistic input data regarding different aspects of navigation. To address the optimal weather routing of a ship, which is one of the most promising field of DSS application, it is necessary to accurately predict an actually attainable speed of a ship and corresponding fuel consumption at given loading conditions and predicted...
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Analysis of exhaled breath for dengue disease detection by low-cost electronic nose system
PublikacjaThis paper presents a procedure and a set-up of an electronic nose system analyzing exhaled breath to detect the patients suffering from dengue – a mosquito-borne tropical disease. Low-power resistive gas sensors (MiCS-6814, TGS8100) were used to detect volatile organic compounds (VOCs) in the exhaled breath. The end-tidal phase of patients exhaled breath was collected with a BioVOCTM breath sampler. Two strategies were assessed...
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Non-Least Square GNSS Positioning Algorithm for Densely Urbanized Areas
PublikacjaThe paper introduces an essentially new algorithm for calculating the GNSS position as an alternative to the least-square method. The proposed approach can be widely applied to any positioning method that uses multiple position lines for position calculation and is an example ofhow using a numerical solution can improve position accuracy without access to historical data. In essence, the method is based on the adaptation of the...
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Acoustic Detector of Road Vehicles Based on Sound Intensity
PublikacjaA method of detecting and counting road vehicles using an acoustic sensor placed by the road is presented. The sensor measures sound intensity in two directions: parallel and perpendicular to the road. The sound intensity analysis performs acoustic event detection. A normalized position of the sound source is tracked and used to determine if the detected event is related to a moving vehicle and to establish the direction of movement....
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Comparison of Traffic Flow Models with Real Traffic Data Based on a Quantitative Assessment
PublikacjaThe fundamental relationship of traffic flow and bivariate relations between speed and flow, speed and density, and flow and density are of great importance in transportation engineering. Fundamental relationship models may be applied to assess and forecast traffic conditions at uninterrupted traffic flow facilities. The objective of the article was to analyze and compare existing models of the fundamental relationship. To that...
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An isogeometric finite element formulation for geometrically exact Timoshenko beams with extensible directors
PublikacjaAn isogeometric finite element formulation for geometrically and materially nonlinear Timoshenko beams is presented, which incorporates in-plane deformation of the cross-section described by two extensible director vectors. Since those directors belong to the space R3, a configuration can be additively updated. The developed formulation allows direct application of nonlinear three-dimensional constitutive equations without zero...
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Flow Process Models for Pipeline Diagnosis
PublikacjaThis chapter examines the problem of modeling and parameterization of the transmission pipeline flow process. First, the base model for discrete time is presented, which is a reference for other developed models. Then, the diagonal approximation (AMDA) method is proposed, in which the tridiagonal sub-matrices of the recombination matrix are approximated by their diagonal counterparts, which allows for a simple determination of...
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Practical Eco-Driving Strategy for Suburban Electric Multiple Unit
PublikacjaIn this paper, a practical approach to velocity profile optimization for electric multiple unit was presented. The study focuses on a case of fast urban railway, which is a popular mean of transport across Tricity, Poland. Based on observations and measurements, a potential for improvement of energy efficiency by modifying the speed profile was recognized. In order to conduct necessary calculations, simulation model of railway...
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Highlighting interlanguage phoneme differences based on similarity matrices and convolutional neural network
PublikacjaThe goal of this research is to find a way of highlighting the acoustic differences between consonant phonemes of the Polish and Lithuanian languages. For this purpose, similarity matrices are employed based on speech acoustic parameters combined with a convolutional neural network (CNN). In the first experiment, we compare the effectiveness of the similarity matrices applied to discerning acoustic differences between consonant...
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Effective Gap Size Index for Determination of Optimum Separation Distance Preventing Pounding between Buildings during Earthquakes
PublikacjaSeismic excitations may lead to collisions between adjacent civil engineering structures causing major damage. In this paper, an effective equation for calculating the gap size index is proposed so as to provide the optimum separation distance preventing structural pounding during different earthquakes. Evaluation of the best prediction of the required separation distance between two adjacent buildings was carried out by using...
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Ionic liquids in extraction techniques: Determination of pesticides in food and environmental samples
PublikacjaThe intensive use of pesticides in agricultural practices has promoted the appearance of environmentaland public health problems. Due to that, scientists face challenges with developing simple, fast, sensitive,selective, and low-cost methods dedicated to determining pesticide residues in food and environmentalsamples. Following thefifth principle of Green Analytical Chemistry, chemists are searching for greeneralternatives for...
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RSS-based DoA Estimation Using ESPAR Antennas and Interpolated Radiation Patterns
PublikacjaIn this letter, it is shown how an algorithm, which employs received signal strength (RSS) values in order to estimate direction-of-arrival (DoA) of impinging signals in wireless sensor network (WSN) nodes equipped with electronically steerable parasitic array radiator (ESPAR) antennas, can easily be improved by applying an interpolation algorithm to radiation patterns recorded in the calibration phase of the DoA estimation process....
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Acoustic imaging of selected areas of Gdansk Bay with the aid of parametric echosounder and side-scan sonar
PublikacjaThe article presents and analyses the data recorded during sounding of the Gdansk Bay seabed with the aid of a parametric echosounder and a side-scan sonar. The accuracy of seabed structure examination, as a condition for obtaining valuable results, requires correct configuration of echolocation devices and proper calibration of peripheral devices, such as the survey unit geographical position sensor – GPS, the navigation unit,...
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Simple 2-D Direction-of-Arrival Estimation Using an ESPAR Antenna
PublikacjaIn this letter, it has been shown how an electronically steerable parasitic array radiator (ESPAR) antenna can be used for 2-D direction-of-arrival (DoA) estimation employing received signal strength (RSS) values only. The proposed approach relies on changes in RSS values recorded at the antenna output port observed for different vertical and horizontal directions, while antenna’s main beam sweeps 360° area around the ESPAR antenna. Based...
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Frequency and time domain characteristics of digital control of electric vehicle in-wheel drives
PublikacjaIn-wheel electric drives are promising as actuators in active safety systems of electric and hybrid vehicles. This new function requires dedicated control algorithms, making it essential to deliver models that reflect better the wheel-torque control dynamics of electric drives. The timing of digital control events, whose importance is stressed in current research, still lacks an analytical description allowing for modeling its...
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Efficient model order reduction for FEM analysis of waveguide structures and resonators
PublikacjaAn efficient model order reduction method for three-dimensional Finite Element Method (FEM) analysis of waveguide structures is proposed. The method is based on the Efficient Modal Order Reduction (ENOR) algorithm for creating macro-elements in cascaded subdomains. The resulting macro-elements are represented by very compact submatrices, leading to significant reduction of the overall number of unknowns. The efficiency of the model...
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Automated Detection of Sleep Apnea and Hypopnea Events Based on Robust Airflow Envelope Tracking in the Presence of Breathing Artifacts. - [IEEE JOURNAL OF BIOMEDICAL AND HEALTH INFORMATICS]
PublikacjaThe paper presents a new approach to detection of apnea/hypopnea events, in the presence of artifacts and breathing irregularities, from a single channel airflow record. The proposed algorithm, based on a robust envelope detector , identifies segments of signal affected by a high amplitude mo d- ulation corresponding to apnea/hypopnea events. It is show n that a robust airflow envelope - free of breathing artifacts - improves effectiveness...
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Theoretical study of the photoelectron spectrum of ethyl formate: Ab initio and density functional theory investigation
PublikacjaThe first ionization energy and associated photoelectron spectrum of ethyl formate are investigated with quantum chemistry calculations. The geometries, harmonic vibrational frequencies and first ionization energy are computed at the Hartree-Fock (HF) and at the second order Moller-Plesset perturbation theory (MP2). Moreover, accurate ionization energies are obtained with the Coupled-Cluster theory including singles and doubles...
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Rheological characteristics of oligomeric semiproducts gained via chemical degradation of polyurethane foam using crude glycerin in the presence of different catalysts
PublikacjaPolyurethane (PU) recycling is a topic of growing interest due to the increasing amount of polyurethane waste. The main purpose of polyurethane chemical recycling is to recover the starting polyol. In this study, a method of polyurethane thermochemical recycling, glycerolysis by means of crude glycerin, is proposed. This work presents a comparative study of commercial catalysts used in order to accelerate the decomposition process,...
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Frequency Guided Generalized Adaptive Notch Filtering - Tracking Analysis and Optimization
PublikacjaGeneralized adaptive notch filters (GANFs) are estimators of coefficients of quasi-periodically time-varying systems, encountered e.g., in RF applications when Doppler effect takes place. Current state of the art GANFs can deliver highly accurate estimates of system variations’ frequency, but underperform in terms of accuracy of system coefficient estimates. The paper proposes a novel multistage GANF with improved coefficient...
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Methodology and technology for the polymodal allophonic speech transcription
PublikacjaA method for automatic audiovisual transcription of speech employing: acoustic and visual speech representations is developed. It adopts a combining of audio and visual modalities, which provide a synergy effect in terms of speech recognition accuracy. To establish a robust solution, basic research concerning the relation between the allophonic variation of speech, i.e. the changes in the articulatory setting of speech organs for...
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Methodology and technology for the polymodal allophonic speech transcription
PublikacjaA method for automatic audiovisual transcription of speech employing: acoustic, electromagnetical articulography and visual speech representations is developed. It adopts a combining of audio and visual modalities, which provide a synergy effect in terms of speech recognition accuracy. To establish a robust solution, basic research concerning the relation between the allophonic variation of speech, i.e., the changes in the articulatory...
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Automatic Detection of Nerves in Confocal Corneal Images with Orientation-Based Edge Merging
PublikacjaThe paper presents an algorithm for improving results of automatic nerve detections in confocal microscopy images of human corneal. The method is designed as a postprocessing step of regular detection. After the nerves are initially detected, the algorithms attempts to improve the results by filling unde-sired gaps between single nerves detections in order to correctly mark the entire nerve instead of only parts of it. This approach...
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Examples of numerical simulations of two-dimensional unsaturated flow with VS2DI code using different interblock conductivity averaging schemes
PublikacjaFlow in unsaturated porous media is commonly described by the Richards equation. This equation is strongly nonlinear due to interrelationships between water pressure head (negative in unsaturated conditions), water content and hydraulic conductivity. The accuracy of numerical solution of the Richards equation often depends on the method used to estimate average hydraulic conductivity between neighboring nodes or cells of the numerical...
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Pressure drop of HFE7000 and HFE7100 during flow condensation in minichannels
PublikacjaAttention is focused on the issues of flow resistance and pressure drop of perspective refrigeration fluids during condensation in the two-phase flow in minichannels. The case of the flow through a cylindrical single channel of 2.3 mm inner diameter was carefully analyzed. Pressure drop tests have been performed in diabatic flow conditions. The effect of heat flux, mass flux, vapour quality and saturation temperature on the two-phase...
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Optimal and suboptimal algorithms for identification of time-varying systems with randomly drifting parameters
PublikacjaNoncausal estimation algorithms, which involve smoothing, can be used for off-line identification of nonstationary systems. Since smoothingis based on both past and future data, it offers increased accuracy compared to causal (tracking) estimation schemes, incorporating past data only. It is shown that efficient smoothing variants of the popular exponentially weighted least squares and Kalman filter-based parameter trackers can...
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Respiratory system modelling and simulation basing on the forced oscilation technique
PublikacjaConventional methods of testing lung functioning demand a specific respiratory action of the patient. In contrast, the forced oscillation technique (fot) provides measurements obtained with a minimal cooperation of the subject. The aim of this study is to verify the usefulness of the forced oscillation technique modelling in respiratory system diagnosing. in order to do it two models of fot measurements have been considered: the...
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Position and Orientation Estimation in Radio Network With Groups of Locally Synchronized Nodes
PublikacjaThis article presents a positioning system with groups of locally synchronized nodes. A mobile object is equipped with a group of several synchronized receivers that are able to measure the difference in the time of arrival of signals from reference transmitters. The reference transmitters are synchronized only in local groups, with no global synchronization between groups. It is assumed that the synchronous operation of transmitters...
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User Orientation Detection in Relation to Antenna Geometry in Ultra-Wideband Wireless Body Area Networks Using Deep Learning
PublikacjaIn this paper, the issue of detecting a user’s position in relation to the antenna geometry in ultra-wideband (UWB) off-body wireless body area network (WBAN) communication using deep learning methods is presented. To measure the impulse response of the channel, a measurement stand consisting of EVB1000 devices and DW1000 radio modules was developed and indoor static measurement scenarios were performed. It was proven that for...
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Multiscalar Control Based Airgap Flux Optimization of Induction Motor for Loss Minimization
PublikacjaBased on the induction motor model, considering the core loss resistance that accounts for magnetic characteristic saturation, a speed control approach is devised with an adaptive full-order (AFO) speed observer. The induction motor model analysis is done sincerely in a stationary reference frame. The control approach incorporates a flux reference generator designed to meet optimal operational circumstances and a nonlinear speed...
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Textile reinforced concrete members subjected to tension, bending, and in-plane loads: Experimental study and numerical analyses
PublikacjaTextile reinforced concrete has raised increasing research interest during the last years, mainly due to its potential to be used for freeform shell structures involving complex load situations. Yet, most experimental work has focused on test setups with primarily uniaxial loading. In the current work, such setups are complemented with a novel test setup of deep beams, including in-plane bending and shear. Further, nonlinear finite...
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Optimized Computational Intelligence Model for Estimating the Flexural Behavior of Composite Shear Walls
PublikacjaThis article presents a novel approach to estimate the flexural capacity of reinforced concrete-filled composite plate shear walls using an optimized computational intelligence model. The proposed model was developed and validated based on 47 laboratory data points and the Transit Search (TS) optimization algorithm. Using 80% of the experimental dataset, the optimized model was selected by determining the unknown coefficients of...
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FDTD Method for Electromagnetic Simulations in Media Described by Time-Fractional Constitutive Relations
PublikacjaIn this paper, the finite-difference time-domain (FDTD) method is derived for electromagnetic simulations in media described by the time-fractional (TF) constitutive relations. TF Maxwell’s equations are derived based on these constitutive relations and the Grünwald–Letnikov definition of a fractional derivative. Then the FDTD algorithm, which includes memory effects and energy dissipation of the considered media, is introduced....
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Rapid Multi-band Patch Antenna Yield Estimation Using Polynomial Chaos-Kriging
PublikacjaYield estimation of antenna systems is important to check their robustness with respect to the uncertain sources. Since the Monte Carlo sampling-based real physics simulation model evaluations are computationally intensive, this work proposes the polynomial chaos-Kriging (PC-Kriging) metamodeling technique for fast yield estimation. PC-Kriging integrates the polynomial chaos expansion (PCE) as the trend function of Kriging metamodel...
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Meconium analysis as a promising diagnostic tool for monitoring fetal exposure to toxic substances: Recent trends and perspectives
PublikacjaPrenatal exposure to toxic substances is an important public health problem. Many biological specimens obtained from the fetus or mother are used for biomonitoring. Each material reflects exposure in a specific time period and has different advantages and disadvantages in terms of accuracy, time window of detection and cost/benefit ratio. Recently, meconium has become the matrix of choice in toxicology screening for detecting exposure...
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ReFlexeNN - the Wearable EMG Interface with Neural Network Based Gesture Classification
PublikacjaThe electromyographic activity of muscles was measured using a wireless biofeedback device. The aim of the study was to examine the possibility of creating an automatic muscle tension classifier. Several measurement series were conducted and the participant performed simple physical exercises - forcing the muscle to increase its activity accordingly to the selected scale. A small wireless device was attached to the electrodes placed...
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Evaluation of Three Peptide Immobilization Techniques on a QCM Surface Related to Acetaldehyde Responses in the Gas Phase
PublikacjaThe quartz-crystal microbalance is a sensitive and universal tool for measuring concentrations of various gases in the air. Biochemical functionalization of the QCM electrode allows a label-free detection of specific molecular interactions with high sensitivity and specificity. In addition, it enables a real-time determination of its kinetic rates and affinity constants. This makes QCM a versatile bioanalytical screening tool for...
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RSS-Based DoA Estimation Using ESPAR Antenna Radiation Patterns Spline Interpolation
PublikacjaIn this paper, it is shown how power pattern crosscorrelation (PPCC) algorithm, which relies on received signal strength (RSS) values recorded at electronically steerable parasitic array radiator (ESPAR) antenna output port, used for direction-of-arrival (DoA) estimation, can easily be improved by applying spline interpolation to radiation patterns recorded in the calibration phase of the DoA estimation process. The proposed method...
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A novel calibration method for RSS-based DoA estimation using ESPAR antennas
PublikacjaIn this paper, we introduce a new calibration method that can successfully be used in direction of arrival (DoA) estimation using electronically steerable parasitic array radiator (ESPAR) antennas and employing power-pattern cross-correlation (PPCC) algorithm, which relies on received signal strength (RSS) values recorded at the antenna output port. Instead of the commonly used two-step approach, during which ESPAR antenna calibration...
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Improved Uniform Sampling in Constrained Domains for Data-Driven Modelling of Antennas
PublikacjaData-driven surrogate modelling of antenna structures is an attractive way of accelerating the design process, in particular, parametric optimization. In practice, construction of surrogates is hindered by curse of dimensionality as well as wide ranges of geometry parameters that need to be covered in order to make the model useful. These difficulties can be alleviated by constrained performance-driven modelling with the surrogate...
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Prediction of the Biogenic Amines Index of Poultry Meat Using an Electronic Nose
PublikacjaThe biogenic amines index of fresh chicken meat samples during refrigerated storage was predicted based on the headspace analysis using an electronic nose equipped with an array of electrochemical sensors. The reference biogenic amines index values were obtained using dispersive liquid–liquid microextraction–gas chromatography–mass spectrometry. A prototype electronic nose with modular construction and a dedicated sample chamber...
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Experimental and numerical analysis of the modified TB32 crash tests of the cable barrier system
PublikacjaRoad restraint systems, including safety barriers, are one of the means used to improve road safety. Currently, they can be allowed to general use after passing the specific crash tests. However, it is always important and desirable to evaluate their performance under various realistic conditions, which can happen on the roads. In this study, the behaviour of the cable barrier system in impact conditions different than assumed...
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Verification of safety in low-voltage power systems without nuisance tripping of residual current devices
PublikacjaLow-voltage power systems require initial and periodical verification to check the effectiveness of protection against electric shock. As a protection in case of fault, automatic disconnection of supply is most often used. To verify such a protection measure, the earth fault loop impedance or resistance is measured. This measurement is easy to perform in circuits without residual current devices. When residual current devices are...
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Deep Features Class Activation Map for Thermal Face Detection and Tracking
PublikacjaRecently, capabilities of many computer vision tasks have significantly improved due to advances in Convolutional Neural Networks. In our research, we demonstrate that it can be also used for face detection from low resolution thermal images, acquired with a portable camera. The physical size of the camera used in our research allows for embedding it in a wearable device or indoor remote monitoring solution for elderly and disabled...