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Search results for: SINGING EXPRESSION CLASSIFICATION
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Automatic classification of singing voice quality
PublicationW artykule przedstawiono zagadnienia związane z automatyczną klasyfikacją jakości i rodzajów głosów śpiewaczych. Na potrzebę takiej klasyfikacji stworzono bazę głosów śpiewaczych, w której dokonano parametryzacji nagrań samogłosech śpiewanych przez różnych wokalistów (zarówno profesjonalistów jak i amatorów) na różnych wysokościach i z różną głośnością. W celu ograniczenia wymiaru wektora opisu zastosowano statystykę Behrensa Fishera...
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Ranking Speech Features for Their Usage in Singing Emotion Classification
PublicationThis paper aims to retrieve speech descriptors that may be useful for the classification of emotions in singing. For this purpose, Mel Frequency Cepstral Coefficients (MFCC) and selected Low-Level MPEG 7 descriptors were calculated based on the RAVDESS dataset. The database contains recordings of emotional speech and singing of professional actors presenting six different emotions. Employing the algorithm of Feature Selection based...
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Expert system for automatic classification and quality assessment of singing voices
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Expert system for automatic classification and quality assessment of singing voices
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Automatic Singing Voice Recognition EmployingNeural Networks and Rough Sets
PublicationCelem badań jest automatyczne rozpoznawanie głosów śpiewaczych w kategorii rodzaju i jakości technicznej śpiewu. W artykule opisano stworzoną bazę danych głosów, która zawiera próbki głosu śpiewaków profesjonalnych i amatorskich. W dalszej części opisano parametry zdefiniowane w oparciu o zjawiska biomechaniczne w narządzie głosu podczas śpiewania. W oparciu o stworzone macierze parametrów wytrenowano i porównano automatyczne klasyfikatory...
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Introduction to the special issue on machine learning in acoustics
PublicationWhen we started our Call for Papers for a Special Issue on “Machine Learning in Acoustics” in the Journal of the Acoustical Society of America, our ambition was to invite papers in which machine learning was applied to all acoustics areas. They were listed, but not limited to, as follows: • Music and synthesis analysis • Music sentiment analysis • Music perception • Intelligent music recognition • Musical source separation • Singing...
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A system for singing training
PublicationThe system proposed is aimed at the vocal students and persons who want to improve emission of their voices. The goal is not to substituite a singing teacher but to provide a tool for automatic teaching of voice emission basics. In this way singers can develop their vocal skills and improve them. By a visual feedback a student can control and modify vocal tract maximas (resonances) of a chosen vowel to match the resonances of the...
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System for automatic singing voice recognition
PublicationW artykule przedstawiono system automatycznego rozpoznawania jakości i typu głosu śpiewaczego. Przedstawiono bazę danych oraz zaimplementowane parametry. Algorytmem decyzyjnym jest algorytm sztucznych sieci neuronowych. Wytrenowany system decyzyjny osiąga skuteczność ok. 90% w obydwu kategoriach rozpoznawania. Dodatkowo wykazano przy pomocy metod statystycznych, że wyniki działania systemu automatycznej oceny jakości technicznej...
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PROTEIN EXPRESSION AND PURIFICATION
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Automatic singing quality recognition employing artificial neural networks
PublicationCelem artykułu jest udowodnienie możliwości automatycznej oceny jakości technicznej głosów śpiewaczych. Pokrótce zaprezentowano w nim stworzoną bazę danych głosów śpiewaczych oraz zaimplementowane parametry. Przy pomocy sztucznych sieci neuronowych zaprojektowano system decyzyjny, który oceniono w pięciostopniowej skali jakość techniczną głosu. Przy pomocy metod statystycznych udowodniono, że wyniki generowane przez ten system...
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Automatic detection and correction of detuned singing system for use with query-by-humming applications
PublicationThe aim of the paper is to present an idea of using the automatic detection and correction of detuned singing as a subsystem in query-by-humming (QBH) applications. The common approach to searching for a requested song basing on the melody retrieved from hummed pattern usually employs the so-called Parsons code or melody contour. In such a case information about sound pitch is discarded. It was thought out that an additional module...
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Automatic detection and correction of detuned singing system for use with query-by-humming applications
PublicationThe aim of the paper is to present an idea of using the automatic detection and correction of detuned singing as a subsystem in query-by-humming (QBH) applications. The common approach to searching for a requested song basing on the melody retrieved from hummed pattern usually employs the so-called Parsons code or melody contour. In such a case information about sound pitch is discarded. It was thought out that an additional module...
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Transcriptomic landscape of blood platelets in healthy donors
PublicationBlood platelet RNA-sequencing is increasingly used among the scientific community. Aberrant platelet transcriptome is common in cancer or cardiovascular disease, but reference data on platelet RNA content in healthy individuals are scarce and merit complex investigation. We sought to explore the dynamics of platelet transcriptome. Datasets from 204 healthy donors were used for the analysis of splice variants, particularly with...
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Journal of Classification
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GENE EXPRESSION
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Novel Tools for Comprehensive Functional Analysis of LDLR (Low-Density Lipoprotein Receptor) Variants
PublicationFamilial hypercholesterolemia (FH) is an autosomal-dominant disorder caused mainly by substitutions in the low-density lipoprotein receptor (LDLR) gene, leading to an increased risk of premature cardiovascular diseases. Tremendous advances in sequencing techniques have resulted in the discovery of more than 3000 variants of the LDLR gene, but not all of them are clinically relevant. Therefore, functional studies of selected variants...
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Physics augmented classification of fNIRS signals
PublicationBackground. Predictive classification favours performance over semantics. In traditional predictive classification pipelines, feature engineering is often oblivious to the underlying phenomena. Hypothesis. In applied domains such as functional Near Infrared Spectroscopy (fNIRS), the exploitation of physical knowledge may improve the discriminative quality of our observation set. Aims. Give exemplary evidence that intervening the...
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Cataloging & Classification Quarterly
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Vegetation Classification and Survey
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GENE EXPRESSION PATTERNS
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LEGO bricks for training classification network
Open Research DataThe data set contains images of 447 different classes of LEGO bricks used for training LEGO bricks classification network. The dataset contains two types of images: photos (10%) and renders (90%) aggregated into respective directories. Each directory (photos and renders) contains 447 directories labeled as the official brick type number. The images...
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Seabed classification using multibeam echosounder
PublicationThe method of seabed identification and classification from multibeam sonar echoes is presented. The proposed approach is based on calculation of a set of parameters of an echo envelope, similarly as in seafloor classification using single beam echosounder. These parameters are extracted for each consecutive beam allowing the estimation of their dependence on the seafloor incident angle. The relation between seabed type and calculated...
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Comparison of selected electroencephalographic signal classification methods
PublicationA variety of methods exists for electroencephalographic (EEG) signals classification. In this paper, we briefly review selected methods developed for such a purpose. First, a short description of the EEG signal characteristics is shown. Then, a comparison between the selected EEG signal classification methods, based on the overview of research studies on this topic, is presented. Examples of methods included in the study are: Artificial...
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Impact of optimization of ALS point cloud on classification
PublicationAirborne laser scanning (ALS) is one of the LIDAR technologies (Light Detection and Ranging). It provides information about the terrain in form of a point cloud. During measurement is acquired: spatial data (object’s coordinates X, Y, Z) and collateral data such as intensity of reflected signal. The obtained point cloud is typically applied for generating a digital terrain model (DTM) and a digital surface model (DSM). For DTM...
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A System for Heart Sounds Classification
PublicationThe future of quick and efficient disease diagnosis lays in the development of reliable non-invasive methods. As for the cardiac diseases – one of the major causes of death around the globe – a concept of an electronic stethoscope equipped with an automatic heart tone identification system appears to be the best solution. Thanks to the advancement in technology, the quality of phonocardiography signals is no longer an issue. However,...
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The Hough transform in the classification process of inland ships
PublicationThis article presents an analysis of the possibilities of using image processing methods for feature extraction that allows kNN classification based on a ship’s image delivered from an on-water video surveillance system. The subject of the analysis is the Hough transform which enables the detection of straight lines in an image. The recognized straight lines and the information about them serve as features in the classification...
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Using similar classification tasks in feature extractor learning
PublicationThe article presents and experimentally verify the idea of automatic construction of feature extractors in classification problems. The extractors are created by genetic programming techniques using classification examples taken from other problems then the problem under consideration.
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Selection of Relevant Features for Text Classification with K-NN
PublicationIn this paper, we describe five features selection techniques used for a text classification. An information gain, independent significance feature test, chi-squared test, odds ratio test, and frequency filtering have been compared according to the text benchmarks based on Wikipedia. For each method we present the results of classification quality obtained on the test datasets using K-NN based approach. A main advantage of evaluated...
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Using multibeam echoes in seafloor characterisation and classification
PublicationThe method of seabed identification and classification from multibeam sonar echoes is presented. The proposed approach is based on calculation of a set of parameters of an echo envelope, similarly as in seafloor classification using single beam echosounder. These parameters are extracted for each consecutive beam allowing the estimation of their dependence on the seafloor incident angle. The relation between seabed type and calculated...
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Automatic singing voice recognition employing neural networks and rough sets
PublicationCelem prac opisanych w referacie jest automatyczne rozpoznawanie głosów śpiewaczych. Do tego celu utworzona została baza nagrań próbek śpiewu profesjonalnego i amatorskiego. Próbki poddane zostały parametryzacji parametrami zaproponowanymi przez autorów ściśle do tego celu. Sposób wyznaczenia parametrów i ich interpretacja fizyczna przedstawione są w referacie. Parametry wprowadzane są do systemów decyzyjnych, klasyfikatorów opartych...
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A two-plasmid Escherichia coli system for expression of Dr adhesins
PublicationPraca opisuje konstrukcję wydajnego systemu produkcji fimbrii Dr. System składa się z dwóch plazmidów. Plazmid pACYCpBAD-DraC-C-His zawiera pod kontrolą promotora arabinozowego gen draC kodujący białko kanałotwórcze DraC. Plazmid pET-30b-sygDraBE zawiera pod kontrolą promotora T7lac geny draB i draE kodujące odpowiednio białko opiekuńcze DraB oraz adhezynę DraE. Oba plzamidy posiadają różne ori replikacji co pozwala na ich jednoczesne...
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Image Classification Based on Video Segments
PublicationIn the dissertation a new method for improving the quality of classifications of images in video streams has been proposed and analyzed. In multiple fields concerning such a classification, the proposed algorithms focus on the analysis of single frames. This class of algorithms has been named OFA (One Frame Analyzed).In the dissertation, small segments of the video are considered and each image is analyzed in the context of its...
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Architectural expression in designing museums as places of remembrance
PublicationMuseums commemorating tragic historic events require the application of particular means of architectural expression. Both the form of the building, the interior design, lighting and materials and its surroundings became a part of the exhibition. In this article the narrative role of architectural components is discussed based on three museums located in different cultural and geographical areas. These are: the Nanjing Massacre...
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Clothes Detection and Classification Using Convolutional Neural Networks
PublicationIn this paper we describe development of a computer vision system for accurate detection and classification of clothes for e-commerce images. We present a set of experiments on well established architectures of convolutional neural networks, including Residual networks, SqueezeNet and Single Shot MultiBox Detector (SSD). The clothes detection network was trained and tested on DeepFashion dataset, which contains box annotations...
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Basic Hand Gestures Classification Based on Surface Electromyography
PublicationThis paper presents an innovative classification system for hand gestures using 2-channel surface electromyography analysis. The system developed uses the Support Vector Machine classifier, for which the kernel function and parameter optimisation are conducted additionally by the Cuckoo Search swarm algorithm. The system developed is compared with standard Support Vector Machine classifiers with various kernel functions. The average...
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An Analysis of Neural Word Representations for Wikipedia Articles Classification
PublicationOne of the current popular methods of generating word representations is an approach based on the analysis of large document collections with neural networks. It creates so-called word-embeddings that attempt to learn relationships between words and encode this information in the form of a low-dimensional vector. The goal of this paper is to examine the differences between the most popular embedding models and the typical bag-of-words...
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The analysis of the expression of hTERT in anthraquinone-treated NSCLC cells
Open Research DataThe datasets showcase an analysis of hTERT relative gene expression in NSCLC cells treated with anthraquinone, quantified as fold change compared to DMSO-treated control cells, using the comparative CT method.
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Automatic Classification of Polish Sign Language Words
PublicationIn the article we present the approach to automatic recognition of hand gestures using eGlove device. We present the research results of the system for detection and classification of static and dynamic words of Polish language. The results indicate the usage of eGlove allows to gain good recognition quality that additionally can be improved using additional data sources such as RGB cameras.
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Using angular dependence of multibeam echo features in seabed classification
PublicationThe new approach to seabed classification based on processing multibeam sonar echoes is presented. The multibeam sonars, besides their well verified and widely used applications like high resolution bathymetry measurements or underwater object imaging, are also the promising tool in seafloor identification and classification, having several advantages over conventional single beam echosounders. The proposed seabed classification...
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Advances in Data Analysis and Classification
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How to Sort Them? A Network for LEGO Bricks Classification
PublicationLEGO bricks are highly popular due to the ability to build almost any type of creation. This is possible thanks to availability of multiple shapes and colors of the bricks. For the smooth build process the bricks need to properly sorted and arranged. In our work we aim at creating an automated LEGO bricks sorter. With over 3700 different LEGO parts bricks classification has to be done with deep neural networks. The question arises...
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Emotion Recognition - the need for a complete analysis of the phenomenon of expression formation
PublicationThis article shows how complex emotions are. This has been proven by the analysis of the changes that occur on the face. The authors present the problem of image analysis for the purpose of identifying emotions. In addition, they point out the importance of recording the phenomenon of the development of emotions on the human face with the use of high-speed cameras, which allows the detection of micro expression. The work that was...
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Classification of Music Genres by Means of Listening Tests and Decision Algorithms
PublicationThe paper compares the results of audio excerpt assignment to a music genre obtained in listening tests and classification by means of decision algorithms. A short review on music description employing music styles and genres is given. Then, assumptions of listening tests to be carried out along with an online survey for assigning audio samples to selected music genres are presented. A framework for music parametrization is created...
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Expression of goose parvovirus whole VP3 protein and its epitopes in Escherichia coli cells
PublicationThe aim of this study was the expression of goose parvovirus capsid protein (VP3) and its epitopes in Escherichia coli cells. Expression of the whole VP3 protein provided an insufficient amount of protein. In contrast, the expression of two VP3 epitopes (VP3ep4, VP3ep6) in E. coli, resulted in very high expression levels. This may suggest that smaller parts of the GPV antigenic determinants are more efficiently expressed than the...
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Endoscopic Video Classification with the Consideration of Temporal Patterns
PublicationThe article describes a novel approach to automatic recognition and classification of diseases in endoscopic videos. Current directions of research in this field are discussed. Most presented methods focus on processing single frames and do not take into consideration the temporal relationship between continuous classifications. Existing approaches that consider the temporal structure of an incoming frame sequence are focused on...
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Behavioral state classification in epileptic brain using intracranial electrophysiology
PublicationOBJECTIVE: Automated behavioral state classification can benefit next generation implantable epilepsy devices. In this study we explored the feasibility of automated awake (AW) and slow wave sleep (SWS) classification using wide bandwidth intracranial EEG (iEEG) in patients undergoing evaluation for epilepsy surgery. APPROACH: Data from seven patients (age [Formula: see text], 4 women) who underwent intracranial depth electrode...
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Viewpoint independent shape-based object classification for video surveillance
PublicationA method for shape based object classification is presented.Unlike object dimension based methods it does not require any system calibration techniques. A number of 3D object models are utilized as a source of training dataset for a specified camera orientation. Usage of the 3D models allows to perform the dataset creation process semiautomatically. The background subtraction method is used for the purpose of detecting moving objects...
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On Algorithm Details in Multibeam Seafloor Classification
PublicationRemote sensing of the seafloor constitutes an important topic in exploration, management, protection and other investigations of the marine environment. In the paper, a combined approach to seafloor characterisation is presented. It relies on calculation of several descriptors related to seabed type using three different types of multibeam sonar data obtained during seafloor sensing, viz.: 1) the grey-level sonar images (echograms)...
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ISSUES OF CLASSIFICATION FUNCTION CONTINUITY IN ENDOSCOPIC VIDEO CLASSIFICATION
PublicationIn the article a new way of analyzing the properties of feature vector functions (FVF) and classiers of images in a video stream is proposed. The general idea is based on focusing of the perceived continuity of the FVF and classier functions. Issues related to creating an exact mathematical model are discussed and a simplied solution is proposed. An exemplary algorithm is evaluated on three exemplary video sequences. The acquired...
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Comparison of Classification Methods for EEG Signals of Real and Imaginary Motion
PublicationThe classification of EEG signals provides an important element of brain-computer interface (BCI) applications, underlying an efficient interaction between a human and a computer application. The BCI applications can be especially useful for people with disabilities. Numerous experiments aim at recognition of motion intent of left or right hand being useful for locked-in-state or paralyzed subjects in controlling computer applications....
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A note on the affective computing systems and machines: a classification and appraisal
PublicationAffective computing (AfC) is a continuously growing multidisciplinary field, spanning areas from artificial intelligence, throughout engineering, psychology, education, cognitive science, to sociology. Therefore, many studies have been devoted to the aim of addressing numerous issues, regarding different facets of AfC solutions. However, there is a lack of classification of the AfC systems. This study aims to fill this gap by reviewing...
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Cloning, Expression and Purification of Wild-Type Trehalose Synthase from Deinococcus geothermalis
PublicationThe aim of this study was isolation and cloning of trehalose synthase gene derived from extremophilic microorganism to the expression vectors in the Tabor-Studier system and its expression in Rosetta(DE3)pLysS Escherichia coli cells. The second phase of the study consisted of proteins purification using an initial denaturation of host proteins and salting-out proteins by ammonium sulfate.
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Objects classification based on their physical sizes for detection of events in camera images
PublicationIn the paper, a method of estimation of the physical sizes of the objects tracked in the video surveillance system, and a simple module for object classification based on the estimated physical sizes, are presented. The results of object classification are then used for automatic detection of various types of events in the camera image.
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Sequential classification.
PublicationOpisano uogólniony algorytm konstrukcji klasyfikatora sekwencyjnego. Uogólnienie polega na tym, że zbiór klas dzielimy na dwie grupy zamiast oddzielania po jednej klasie w każdym kroku uczenia klasyfikatora. Eksperymenty potwierdzały lepsze własności klasyfikatora.
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Vehicle classification based on soft computing algorithms
PublicationExperiments and results regarding vehicle type classification are presented. Three classes of vehicles are recognized: sedans, vans and trucks. The system uses a non-calibrated traffic camera, therefore no direct vehicle dimensions are used. Various vehicle descriptors are tested, including those based on vehicle mask only and those based on vehicle images. The latter ones employ Speeded Up Robust Features (SURF) and gradient images...
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Accelerating Video Frames Classification With Metric Based Scene Segmentation
PublicationThis paper addresses the problem of the efficient classification of images in a video stream in cases, where all of the video has to be labeled. Realizing the similarity of consecutive frames, we introduce a set of simple metrics to measure that similarity. To use these observations for decreasing the number of necessary classifications, we propose a scene segmentation algorithm. Performed experiments have evaluated the acquired...
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Classification of Polish wines by application of ultra-fast gas chromatography
PublicationThe potential of ultra-fast gas chromatography (GC) combined with chemometric analysis for classification of wine originating from Poland according to the variety of grape used for production was investigated. A total of 44 Polish wine samples differing in the type of grape (and grape growth region) used for the production as well as parameters of the fermentation process, alcohol content, sweetness, and others which characterize...
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Multibeam Sonar Data Processing for Seafloor Classification
PublicationDespite many years of the development of methodology for sensing the seafloor by means of underwater acoustics, the currently used techniques are still not mature enough and not ready to be utilised in numerous different (i.e. with respect to a water region character, used equipment type etc.) tasks. Therefore the hydroacoustic methods, both utilising vertical observations (e.g. by singlebeam echosounders), as well as those relying...
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From Scores to Predictions in Multi-Label Classification: Neural Thresholding Strategies
PublicationIn this paper, we propose a novel approach for obtaining predictions from per-class scores to improve the accuracy of multi-label classification systems. In a multi-label classification task, the expected output is a set of predicted labels per each testing sample. Typically, these predictions are calculated by implicit or explicit thresholding of per-class real-valued scores: classes with scores exceeding a given threshold value...
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Application of an Electronic Nose Instrument to Fast Classification of Polish Honey Types
PublicationThe paper presents practical utilization of an electronic nose prototype, based on the FIGARO semiconductor sensors, in fast classification of Polish honey types—acacia flower, linden flower, rape, buckwheat and honeydew ones. A set of thermostating modules of the prototype provided gradient temperature characteristics of barbotage-prepared gas mixtures and stable measurement conditions. Three chemometric data analysis methods...
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Production of Toxoplasma gondii MAG1 recombinant antigen in Leishmania tarentolae expression system
PublicationThe results of the work associated with the production of the Toxoplasma gondii matrix antigen 1 (MAG1) in the eukaryotic expression system of Leishmania tarentolae are shown.
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Real and Virtual Instruments in Machine Learning – Training and Comparison of Classification Results
PublicationThe continuous growth of the computing power of processors, as well as the fact that computational clusters can be created from combined machines, allows for increasing the complexity of algorithms that can be trained. The process, however, requires expanding the basis of the training sets. One of the main obstacles in music classification is the lack of high-quality, real-life recording database for every instrument with a variety...
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CLASSIFICATION OF RESTRAINTS IN THE OPTIMIZATION PROBLEM OF A COLD-FORMED PROFILE
PublicationThis work describes the restraints in the optimization problem. This is an important and complicated issue because it requires taking into account a vast range of information related to the design and production. In order to describe the relations of a specific optimization problem, it is essential to adopt appropriate criteria and to collect information on all kinds of restraints, i.e. boundary conditions. The following paper...
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Potential and Use of the Googlenet Ann for the Purposes of Inland Water Ships Classification
PublicationThis article presents an analysis of the possibilities of using the pre-degraded GoogLeNet artificial neural network to classify inland vessels. Inland water authorities monitor the intensity of the vessels via CCTV. Such classification seems to be an improvement in their statutory tasks. The automatic classification of the inland vessels from video recording is a one of the main objectives of the Automatic Ship Recognition and...
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Comparative Analysis of Text Representation Methods Using Classification
PublicationIn our work, we review and empirically evaluate five different raw methods of text representation that allow automatic processing of Wikipedia articles. The main contribution of the article—evaluation of approaches to text representation for machine learning tasks—indicates that the text representation is fundamental for achieving good categorization results. The analysis of the representation methods creates a baseline that cannot...
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Classification of high-voltage varistors into groups of differentiated quality
PublicationThe research was aimed on defining a factor of quality for high-voltage varistors using Non-Destructive Testing (NDT) techniques, which could be applied during the production testing. The newly proposed parameter Q determined on the basis of the lowest resonant frequency fr measured within the preselected frequency range was taken into account. The parameter Q was defined for ZnO structures after firing, without metallized contacts....
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Mask Detection and Classification in Thermal Face Images
PublicationFace masks are recommended to reduce the transmission of many viruses, especially SARS-CoV-2. Therefore, the automatic detection of whether there is a mask on the face, what type of mask is worn, and how it is worn is an important research topic. In this work, the use of thermal imaging was considered to analyze the possibility of detecting (localizing) a mask on the face, as well as to check whether it is possible to classify...
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Improving css-KNN Classification Performance by Shifts in Training Data
PublicationThis paper presents a new approach to improve the performance of a css-k-NN classifier for categorization of text documents. The css-k-NN classifier (i.e., a threshold-based variation of a standard k-NN classifier we proposed in [1]) is a lazy-learning instance-based classifier. It does not have parameters associated with features and/or classes of objects, that would be optimized during off-line learning. In this paper we propose...
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Data augmentation for improving deep learning in image classification problem
PublicationThese days deep learning is the fastest-growing field in the field of Machine Learning (ML) and Deep Neural Networks (DNN). Among many of DNN structures, the Convolutional Neural Networks (CNN) are currently the main tool used for the image analysis and classification purposes. Although great achievements and perspectives, deep neural networks and accompanying learning algorithms have some relevant challenges to tackle. In this...
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Identification, Assessment and Automated Classification of Requirements Engineering Techniques
PublicationSelection of suitable techniques to be used in requirements engineering or business analysis activities is not easy, especially considering the large number of new proposals that emerged in recent years. This paper provides a summary of techniques recommended by major sources recognized by the industry. A universal attribute structure for the description of techniques is proposed and used to describe 33 techniques most frequently...
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Rough Set-Based Classification of EEG Signals Related to Real and Imagery Motion
PublicationA rough set-based approach to classification of EEG signals registered while subjects were performing real and imagery motions is presented in the paper. The appropriate subset of EEG channels is selected, the recordings are segmented, and features are extracted, based on time-frequency decomposition of the signal. Rough set classifier is trained in several scenarios, comparing accuracy of classification for real and imagery motion....
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Self-Supervised Learning to Increase the Performance of Skin Lesion Classification
PublicationTo successfully train a deep neural network, a large amount of human-labeled data is required. Unfortunately, in many areas, collecting and labeling data is a difficult and tedious task. Several ways have been developed to mitigate the problem associated with the shortage of data, the most common of which is transfer learning. However, in many cases, the use of transfer learning as the only remedy is insufficient. In this study,...
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A new multi-process collaborative architecture for time series classification
PublicationTime series classification (TSC) is the problem of categorizing time series data by using machine learning techniques. Its applications vary from cybersecurity and health care to remote sensing and human activity recognition. In this paper, we propose a novel multi-process collaborative architecture for TSC. The propositioned method amalgamates multi-head convolutional neural networks and capsule mechanism. In addition to the discovery...
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Expression of cyclin D1 after treatment with doxorubicin in the HL-60 cell line
PublicationIncreased levels of cyclin D1 and amplification of CCND1 gene occur in many types of cancers. We have followed the expression of cyclin D1 after treatment with doxorubicin with reference to cell death and other possible therapeutic implications. The effect of the treatment on the cell cycle, survival, intracellular level (flow cytometry), and intracellular localization of cyclin D1 (fluorescence microscopy) and expression of...
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Classification of Sea Going Vessels Properties Using SAR Satellite Images
PublicationThe aim of the project was to analyze the possibility of using machine learning and computer vision to identify (indicate the location) of all sea-going vessels located in the selected area of the open sea and to classify the main attributes of the vessel. The key elements of the project were to download data from the Sentinel-1 satellite [1], download data on the sea vessels [2], then automatically tag data and develop a detection...
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Towards Cancer Patients Classification Using Liquid Biopsy
PublicationLiquid biopsy is a useful, minimally invasive diagnostic and monitoring tool for cancer disease. Yet, developing accurate methods, given the potentially large number of input features, and usually small datasets size remains very challenging. Recently, a novel feature parameterization based on the RNA-sequenced platelet data which uses the biological knowledge from the Kyoto Encyclopedia of Genes and Genomes, combined with a classifier...
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A New Expression for the 3-D Dyadic FDTD-Compatible Green's Function Based on Multidimensional Z-Transform
PublicationIn this letter, a new analytic expression for the time-domain discrete Green's function (DGF) is derived for the 3-D finite-difference time-domain (FDTD) grid. The derivation employs the multidimensional Z-transform and the impulse response of the discretized scalar wave equation (i.e., scalar DGF). The derived DGF expression involves elementary functions only and requires the implementation of a single function in the multiple-precision...
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Classification methods and criteria
PublicationKlasyfikacja akustyczna dna morskiego jest najnowszą metodologią zaprojektowaną w celu zdalnego wykrywania rozmaitych charakterystyk dna morskiego z informacji zawartych w echch od dna akustycznych impulsów transmitowanych z różnego typu sonarów. Poza szególnymi chrakterystykami sprzętowymi każdego systemu ASC, istotą każdej metody jest klasyfikacja modułu, który wyciąga serie cech z echa sygnału i przetwarza je aby posortować...
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Systematic approach to binary classification of images in video streams using shifting time windows
Publicationin the paper, after pointing out of realistic recordings and classifications of their frames, we propose a new shifting time window approach for improving binary classifications. We consider image classification in tewo steps. in the first one the well known binary classification algorithms are used for each image separately. In the second step the results of the previous step mare analysed in relatively short sequences of consecutive...
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Transcriptomic responses to wounding: meta-analysis of gene expression microarray data
PublicationBackground A vast amount of microarray data on transcriptomic response to injury has been collected so far. We designed the analysis in order to identify the genes displaying significant changes in expression after wounding in different organisms and tissues. This meta-analysis is the first study to compare gene expression profiles in response to wounding in as different tissues as heart, liver, skin, bones, and spinal cord, and...
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Real and imaginary motion classification based on rough set analysis of EEG signals for multimedia applications
PublicationRough set-based approach to the classification of EEG signals of real and imaginary motion is presented. The pre-processing and signal parametrization procedures are described, the rough set theory is briefly introduced, and several classification scenarios and parameters selection methods are proposed. Classification results are provided and discussed with their potential utilization for multimedia applications controlled by the...
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The external walls of a passive building: A classification anddescription of their thermal and optical properties
PublicationThis paper attempts a new classification of insulating materials from the perspective of their utility in thepro-ecological passive construction industry. The main criterion is the conductivity of thermal and solarenergy. Based on their ability to conduct or block fluxes of thermal and solar energy, six types of insulatingwalls are proposed. On the basis of this criterion there are traditional dividing walls (typical walls, wallinsulating...
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Novel method of expression and purification of hirudin based on pBAD TOPO, pTYB12 vectors and gene synthesis
PublicationW pracy przedstawiono nową, szybką i tanią metodę otrzymywania, ekspresji i oczyszczania białka hirudyny naturalnie izolowanego z ślinianek pijawki lekarskiej. Hirudyna pełni funkcje bezpośredniego inhibitora trombiny, głównego białka biorącego udział w tworzeniu skrzepów krwi. Właściwości te wykorzystywane są od wielu lat w klinice. Opracowana metoda pozwoliła uzyskać 17 mg/l hodowli E. coli białka o wysokiej czystości i aktywności...
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Novel thermostable ssDNA-binding proteins from Thermus thermophilus and T. aquaticus-expression and purification
PublicationSklonowano w system ekspresyjny pET-30LIC Escherichia coli gen kodujący białka SSB-podobne Thermus thermophilus i T. aquaticus. Oczyszczono do homogenności białka SSB-podobne, a uzyskane preparaty umożliwiają wykonanie badań strukturalnych w/w białek.
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Analyzing the Impact of Simulated Multispectral Images on Water Classification Accuracy by Means of Spectral Characteristics
PublicationRemote sensing is widely applied in examining the parameters of the state and quality of water. Spectral characteristics of water are strictly connected with the dispersion of electromagnetic radiation by suspended matter and the absorp-tion of radiation by water and chlorophyll a and b.Multispectral sensor ALI has bands within the ranges of electromagnetic radia-tion: blue and infrared, absent in sensors such as Landsat, SPOT,...
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Audio Feature Analysis for Precise Vocalic Segments Classification in English
PublicationAn approach to identifying the most meaningful Mel-Frequency Cepstral Coefficients representing selected allophones and vocalic segments for their classification is presented in the paper. For this purpose, experiments were carried out using algorithms such as Principal Component Analysis, Feature Importance, and Recursive Parameter Elimination. The data used were recordings made within the ALOFON corpus containing audio signal...
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Flood Classification in a Natural Wetland for Early Spring Conditions Using Various Polarimetric SAR Methods
PublicationAbstract--- One of the major limitations of remote sensing flood detection is the presence of vegetation. Our study focuses on a flood classification using Radarsat-2 Quad-Pol data in a natural floodplain during leafless, dry vegetation (early spring) state. We conducted a supervised classification of a data set composed of nine polarimetric decompositions and Shannon entropy followed by the predictors' importance estimation to...
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Genome-Wide DNA Methylation and Gene Expression in Patients with Indolent Systemic Mastocytosis
PublicationMastocytosis is a clinically heterogenous, usually acquired disease of the mast cells with a survival time that depends on the time of onset. It ranges from skin-limited to systemic disease, including indolent and more aggressive variants. The presence of the oncogenic KIT p. D816V gene somatic mutation is a crucial element in the pathogenesis. However, further epigenetic regulation may also affect the expression of genes that...
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Mathematical analysis of a generalised p53-Mdm2 protein gene expression model
PublicationWe propose the generalisation of the p53-Mdm2 protein gene expression model introduced by Monk (2003). We investigate the stability of a unique positive steady state and formulate conditions which guarantee the occurrence of the Hopf bifurcation. We show that oscillatory behaviour can be caused not only by time lag in protein transcription process, but also can be present in the model without time delay. Moreover, we investigate...
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Methodology for Text Classification using Manually Created Corpora-based Sentiment Dictionary
PublicationThis paper presents the methodology of Textual Content Classification, which is based on a combination of algorithms: preliminary formation of a contextual framework for the texts in particular problem area; manual creation of the Hierarchical Sentiment Dictionary (HSD) on the basis of a topically-oriented Corpus; tonality texts recognition via using HSD for analysing the documents as a collection of topically completed fragments...
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Support Vector Machine Applied to Road Traffic Event Classification
PublicationThe aim of this paper is to present results of road traffic event signal recognition. First, several types of systems for road traffic monitoring, including Intelligent Transport System (ITS) are shortly described. Then, assumptions of creating a database of vehicle signals recorded in different weather and road conditions are outlined. Registered signals were edited as single vehicle pass by. Using the Matlab-based application...
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Development of an AI-based audiogram classification method for patient referral
PublicationHearing loss is one of the most significant sensory disabilities. It can have various negative effects on a person's quality of life, ranging from impeded school and academic performance to total social isolation in severe cases. It is therefore vital that early symptoms of hearing loss are diagnosed quickly and accurately. Audiology tests are commonly performed with the use of tonal audiometry, which measures a patient's hearing...
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Classification of objects in the LIDAR point clouds using Deep Neural Networks based on the PointNet model
PublicationThis work attempts to meet the challenges associated with the classification of LIDAR point clouds by means of deep learning. In addition to achieving high accuracy, the designed system should allow the classification of point clouds covering an area of several dozen square kilometers within a reasonable time interval. Therefore, it must be characterized by fast processing and efficient use of memory. Thus, the most popular approaches...
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Improving the Accuracy in Sentiment Classification in the Light of Modelling the Latent Semantic Relations
PublicationThe research presents the methodology of improving the accuracy in sentiment classification in the light of modelling the latent semantic relations (LSR). The objective of this methodology is to find ways of eliminating the limitations of the discriminant and probabilistic methods for LSR revealing and customizing the sentiment classification process (SCP) to the more accurate recognition of text tonality. This objective was achieved...
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Comparison of Methods for Real and Imaginary Motion Classification from EEG Signals
PublicationA method for feature extraction and results of classification of EEG signals obtained from performed and imagined motion are presented. A set of 615 features was obtained to serve for the recognition of type and laterality of motion using 8 different classifications approaches. A comparison of achieved classifiers accuracy is presented in the paper, and then conclusions and discussion are provided. Among applied algorithms the...
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Traffic Noise Analysis Applied to Automatic Vehicle Counting and Classification
PublicationProblems related to determining traffic noise characteristics are discussed in the context of automatic dynamic noise analysis based on noise level measurements and traffic prediction models. The obtained analytical results provide the second goal of the study, namely automatic vehicle counting and classification. Several traffic prediction models are presented and compared to the results of in-situ noise level measurements. Synchronized...
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An Overview of the Development of a Real-Time System for Endoscopic Video Classification
PublicationThe article presents the results of improving endoscopic image classification algorithms in an effort towards applying them in a real-time diagnosis supporting system. Methods for the detection and removal of personal data are presented and discussed. The currently developed recognition algorithms have been improved in terms of accuracy and performance to make them suitable for a real-life implementation. Their test results are...
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Computed aided system for separation and classification of the abnormal erythrocytes in human blood
PublicationThe human peripheral blood consists of cells (red cells, white cells, and platelets) suspended in plasma. In the following research the team assessed an influence of nanodiamond particles on blood elements over various periods of time. The material used in the study consisted of samples taken from ten healthy humans of various age, different blood types and both sexes. The markings were leaded by adding to the blood unmodified...
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Post-Effort Changes in Autophagy- and Inflammation-Related Gene Expression in White Blood Cells of Healthy Young Men
PublicationAcute, strenuous physical exertion requiring high levels of energy production induces the production of reactive oxygen species and metabolic disturbances that can damage the mitochondria. Thus, selective autophagic elimination of defective mitochondria may improve resistance to oxidative stress and potentially to inflammation. The main goal of this study was to evaluate the impacts of intense effort on changes in the expression...
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Influence of Escherichia coli on Expression of Selected Human Drug Addiction Genes
PublicationThe impact of enteric microflora on the expression of genes associated with cocaine and amphetamine addiction was described. Human genome-wide experiments on RNA transcripts expressed in response to three selected Escherichia coli strains allowed for significant alteration (p > 0.05) of the linear regression model between HT-29 RNA transcripts associated with the KEGG pathway:hsa05030:Cocaine addiction after 3 h stimulation with...